RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 RPL22L1Q6P5R6 122 aaKnown RBP16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 TRILQ7L0X0 811 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 FAM220AQ7Z4H9 259 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 ZFP62Q8NB50 900 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 SNIP1Q8TAD8 396 aaKnown RBP16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 PNPLA2Q96AD5 504 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 SLC25A44Q96H78 314 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 KCNK17Q96T54 332 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 TSPAN10Q9H1Z9 355 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 MARCH7Q9H992 704 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 PAQR5Q9NXK6 330 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 PTPRZ1P23471 2315 aaPredicted RBP16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 TRAV17A0A0B4J275 112 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 A0A0J9YW62 118 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 TNFSF11O14788 317 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 LRRTM2O43300 516 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 HPGDSO60760 199 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 TALDO1P37837 337 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 GFRA1P56159 465 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 SRSF6Q13247 344 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 CEACAM19Q7Z692 300 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 Q8N402 240 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 FAM109AQ8N4B1 249 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 MEIOBQ8N635 442 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 CELF2-AS1Q8N7Q2 184 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 FDCSPQ8NFU4 85 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 CPNE4Q96A23 557 aaPredicted RBP16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 PGLYRP3Q96LB9 341 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 TSSK2Q96PF2 358 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 WDR76Q9H967 626 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 ST6GALNAC2Q9UJ37 374 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 MED13Q9UHV7 2174 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 SHISA3A0PJX4 238 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 HSPB2A8KAH6 182 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 TRAF3IP2O43734 574 aaPredicted RBP16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 SELENOFO60613 162 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 CEACAM4O75871 244 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 TFP02787 698 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 WT1P19544 449 aaPredicted RBP16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 OR12D2P58182 307 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 PPIAP62937 165 aaKnown RBP16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 C19orf57Q0VDD7 668 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 CDK5R1Q15078 307 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 HSPB2Q16082 182 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 BCL2A1Q16548 175 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 TIGD4Q8IY51 512 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 TMEM251Q8N6I4 163 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 ZNF454Q8N9F8 522 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 NOXO1Q8NFA2 376 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 ASB17Q8WXJ9 295 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 SMIM19Q96E16 107 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 HES7Q9BYE0 225 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 ACKR4Q9NPB9 350 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 CYSLTR2Q9NS75 346 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 MED29Q9NX70 200 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 LAMP5Q9UJQ1 280 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 KCNMB2Q9Y691 235 aa16.23■□□□□ 0.19
CCDC88C-203ENST00000389856 IGLV1-36A0A0B4J1U3 117 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 FAM166BA8MTA8 275 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 FAM171A2A8MVW0 826 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 EFSO43281 561 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 CCNKO75909 580 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 ACTL6AO96019 429 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 ZNF823P16415 610 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 CAV3P56539 151 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 SIRPAP78324 504 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 CD300CQ08708 224 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 IL18Q14116 193 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 SLC10A1Q14973 349 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 GGNQ86UU5 652 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 ZNF511Q8NB15 262 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 OR6N2Q8NGY6 317 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 INTS12Q96CB8 462 aaKnown RBP16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 CMTM3Q96MX0 182 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 ZCCHC4Q9H5U6 513 aa16.22■□□□□ 0.19
CCDC88C-203ENST00000389856 ARPC4-TTLL3A0A0A6YYG9 625 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 HMX3A6NHT5 357 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 E9PI62 339 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 KRT8P05787 483 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 CTLA4P16410 223 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 HOXD11P31277 338 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 MAP2K3P46734 347 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 EGR3Q06889 387 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 SLC3A1Q07837 685 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 ACSM3Q53FZ2 586 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 IDNKQ5T6J7 187 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 SFXN4Q6P4A7 337 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 BAIAP2L2Q6UXY1 529 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 CDC20BQ86Y33 519 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 DUSP18Q8NEJ0 188 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 OR9K2Q8NGE7 335 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 ENKURQ8TC29 256 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 ZNRF4Q8WWF5 429 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 GHSRQ92847 366 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 SCNM1Q9BWG6 230 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 C11orf54Q9H0W9 315 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 RBFOX1Q9NWB1 397 aaKnown RBP16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 ABRACLQ9P1F3 81 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 KLHL9Q9P2J3 617 aa16.21■□□□□ 0.19
CCDC88C-203ENST00000389856 KLHL13Q9P2N7 655 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 445.1 ms