RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TNFSF8P32971 234 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 MEOX1P50221 254 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 PPP5CP53041 499 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 SOX8P57073 446 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 ZNF45Q02386 682 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 CAMK2BQ13554 666 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 SLC17A1Q14916 467 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 HSPB2Q16082 182 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 OR7E24Q6IFN5 339 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 PAMR1Q6UXH9 720 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 DCXRQ7Z4W1 244 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 CCDC190Q86UF4 302 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 PARP16Q8N5Y8 322 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 OR2G2Q8NGZ5 317 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 OR10D3Q8NH80 312 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 RGP1Q92546 391 aaPredicted RBP11.91□□□□□ -0.5
HMGB1-202ENST00000339872 MCHR2Q969V1 340 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 MAP6Q96JE9 813 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 SEC61A2Q9H9S3 476 aa11.91□□□□□ -0.5
HMGB1-202ENST00000339872 CACNA1CQ13936 2221 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 AQP8O94778 261 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 QDPRP09417 244 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 CCL11P51671 97 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 ROM1Q03395 351 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 RTP5Q14D33 572 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 YIF1BQ5BJH7 314 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 SLC25A47Q6Q0C1 308 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 CORO6Q6QEF8 472 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 NR2C2APQ86WQ0 139 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 TMEM251Q8N6I4 163 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 ADGRG7Q96K78 797 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 ZNF552Q9H707 407 aaPredicted RBP11.9□□□□□ -0.5
HMGB1-202ENST00000339872 B3GNT3Q9Y2A9 372 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 LRP12Q9Y561 859 aa11.9□□□□□ -0.5
HMGB1-202ENST00000339872 TRABD2BA6NFA1 517 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 KLRC4-KLRK1H3BQV0 150 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 TMCC2O75069 709 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 GATBO75879 557 aaKnown RBP11.89□□□□□ -0.51
HMGB1-202ENST00000339872 ARL6IP5O75915 188 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 CD40LGP29965 261 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 CDAP32320 146 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 CSNK1A1P48729 337 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 RIDAP52758 137 aaKnown RBP11.89□□□□□ -0.51
HMGB1-202ENST00000339872 CLN3Q13286 438 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 HIST3H3Q16695 136 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 PCK2Q16822 640 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 ODF4Q2M2E3 257 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 TEX30Q5JUR7 227 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 PRSS35Q8N3Z0 413 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 OR6N1Q8NGY5 312 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 ST7LQ8TDW4 575 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 OR2M2Q96R28 347 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 ATF6BQ99941 703 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 SLC30A2Q9BRI3 323 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 COMMD4Q9H0A8 199 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 SLC6A15Q9H2J7 730 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 ABCB9Q9NP78 766 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 GTF2A1LQ9UNN4 478 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 GVINP1Q7Z2Y8 2422 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 ACOD1A6NK06 481 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 LINC01387J3KSC0 135 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 UCHL1P09936 223 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 NR2C1P13056 603 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 ETV6P41212 452 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 CLDN15P56746 228 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 OR10A3P58181 314 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 DDI2Q5TDH0 399 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 LRFN4Q6PJG9 635 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 ASB18Q6ZVZ8 466 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 TPRA1Q86W33 373 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF676Q8N7Q3 588 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 TEX19Q8NA77 164 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 RNF128Q8TEB7 428 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 ROBO4Q8WZ75 1007 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 HTRA1Q92743 480 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 C4orf45Q96LM5 186 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 SF3B5Q9BWJ5 86 aaKnown RBP11.89□□□□□ -0.51
HMGB1-202ENST00000339872 EMC7Q9NPA0 242 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 GLTPQ9NZD2 209 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 COMMD3Q9UBI1 195 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 CDV3Q9UKY7 258 aaKnown RBP11.89□□□□□ -0.51
HMGB1-202ENST00000339872 POLR1DQ9Y2S0 133 aa11.89□□□□□ -0.51
HMGB1-202ENST00000339872 OR4C45A6NMZ5 311 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF879B4DU55 563 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 CDK2AP1O14519 115 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 CFL1P23528 166 aaKnown RBP11.88□□□□□ -0.51
HMGB1-202ENST00000339872 MAGEB1P43366 347 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 SELENOPP49908 381 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 RASGEF1BQ0VAM2 473 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 CDC20Q12834 499 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 HSD17B12Q53GQ0 312 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF766Q5HY98 468 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 WDR38Q5JTN6 314 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 IDNKQ5T6J7 187 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 TRILQ7L0X0 811 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.88□□□□□ -0.51
HMGB1-202ENST00000339872 FDCSPQ8NFU4 85 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 HAS2Q92819 552 aa11.88□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF775Q96BV0 537 aaPredicted RBP11.88□□□□□ -0.51
HMGB1-202ENST00000339872 ZNF845Q96IR2 970 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms