RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ITGB2P05107 769 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ALDOCP09972 364 aaKnown RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ATXN1LP0C7T5 689 aaKnown RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ICAM2P13598 275 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 DIO1P49895 249 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 KIAA1024LP59773 190 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 DPTQ07507 201 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 EML3Q32P44 896 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM220Q6QAJ8 160 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF705AQ6ZN79 300 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 SLC16A12Q6ZSM3 486 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ADIPOR2Q86V24 386 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 NAGSQ8N159 534 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ANKLE1Q8NAG6 615 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 PTPN18Q99952 460 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 OR52D1Q9H346 318 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 BANF2Q9H503 90 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 PARP11Q9NR21 331 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 GPR55Q9Y2T6 319 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 CCL16O15467 120 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 ADAM20O43506 726 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 LAP3P28838 519 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 DCTDP32321 178 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 SNU13P55769 128 aaKnown RBP4.84□□□□□ -1.64
SCN1A-201ENST00000303395 NFATC4Q14934 902 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.84□□□□□ -1.64
SCN1A-201ENST00000303395 STEAP1BQ6NZ63 245 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 TOMM20LQ6UXN7 152 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 PPP1R3BQ86XI6 285 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 C1orf174Q8IYL3 243 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 HUS1BQ8NHY5 278 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 SEH1LQ96EE3 360 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 TCTN2Q96GX1 697 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 KATNB1Q9BVA0 655 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 NMES1Q9C002 83 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 TMEM184BQ9Y519 407 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-201ENST00000303395 NKX6-3A6NJ46 265 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 HOXC11O43248 304 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-201ENST00000303395 ERI3O43414 337 aaKnown RBP4.84□□□□□ -1.64
SCN1A-201ENST00000303395 SORBS2O94875 1100 aaKnown RBP4.84□□□□□ -1.64
SCN1A-201ENST00000303395 PCMT1P22061 227 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 CD68P34810 354 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-201ENST00000303395 MOGAT2Q3SYC2 334 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 RPL7L1Q6DKI1 246 aaKnown RBP4.84□□□□□ -1.64
SCN1A-201ENST00000303395 TRAT1Q6PIZ9 186 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 OSTM1Q86WC4 334 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 TP53I13Q8NBR0 393 aaPredicted RBP4.84□□□□□ -1.64
SCN1A-201ENST00000303395 HLA-CQ95604 372 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 ZDHHC16Q969W1 377 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 BOD1Q96IK1 185 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 OR5B2Q96R09 309 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 ZPBPQ9BS86 351 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 DEFB126Q9BYW3 111 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 TCFL5Q9UL49 500 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 CLEC4EQ9ULY5 219 aa4.84□□□□□ -1.64
SCN1A-201ENST00000303395 YARS2Q9Y2Z4 477 aaKnown RBP4.84□□□□□ -1.64
SCN1A-201ENST00000303395 MED13Q9UHV7 2174 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TRBV23OR9-2A0A075B6M9 112 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 EIF1BO60739 113 aaKnown RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 OR2J3O76001 311 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 CD79AP11912 226 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 SLC25A6P12236 298 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 VEGFAP15692 232 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 LIPAP38571 399 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 DAPP51397 102 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 LINC01559Q495D7 138 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 C2orf27AQ580R0 203 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 FAM71E1Q6IPT2 247 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 OR4A16Q8NH70 328 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 FBXO27Q8NI29 283 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 ACY3Q96HD9 319 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TOLLIPQ9H0E2 274 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 ZDHHC11Q9H8X9 412 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 PLEKHJ1Q9NW61 149 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 MARCH5Q9NX47 278 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 IL36AQ9UHA7 158 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 CASP8AP2Q9UKL3 1982 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TRAV6A0A075B6T7 132 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TRBV5-3A0A0A0MS03 114 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 CDRT15L2A8MXV6 281 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 MFNGO00587 321 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 DUX1O43812 170 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 IGHA1P01876 353 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 CD14P08571 375 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 CTSAP10619 480 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 GABRR1P24046 479 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 GIFP27352 417 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 GABRA2P47869 451 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TXNRD3NBQ6F5E7 133 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 NUP43Q8NFH3 380 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 OR51A4Q8NGJ6 313 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 FBXL17Q9UF56 701 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 NOSIPQ9Y314 301 aaKnown RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TIMM13Q9Y5L4 95 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-201ENST00000303395 A0A1W2PPK0 400 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 FAM24AA6NFZ4 105 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 NPIPB13A6NJU9 1138 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 IFITM5A6NNB3 132 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 NPIPB4C9JG80 1138 aa4.83□□□□□ -1.64
SCN1A-201ENST00000303395 TXNDC12O95881 172 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms