RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 UTP23Q9BRU9 249 aaKnown RBP12.74□□□□□ -0.37
C9orf3-202ENST00000297979 EMC6Q9BV81 110 aa12.74□□□□□ -0.37
C9orf3-202ENST00000297979 KLHL13Q9P2N7 655 aa12.74□□□□□ -0.37
C9orf3-202ENST00000297979 RBMX2Q9Y388 322 aaKnown RBP12.74□□□□□ -0.37
C9orf3-202ENST00000297979 GJE1A6NN92 205 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 GPRIN2O60269 458 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 SPARCP09486 303 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 ETV6P41212 452 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 ACSM3Q53FZ2 586 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 SPANXN2Q5MJ10 180 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 LIPNQ5VXI9 398 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.73□□□□□ -0.37
C9orf3-202ENST00000297979 CCDC190Q86UF4 302 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 OR14L1PQ8NHC6 308 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 ADAMTS14Q8WXS8 1223 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 GAL3ST1Q99999 423 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 SH3BGRL2Q9UJC5 107 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 ALPK2Q86TB3 2170 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 LOC102725191A0A1B0GVB3 256 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 KHDRBS3O75525 346 aaKnown RBP12.73□□□□□ -0.37
C9orf3-202ENST00000297979 UPK3AO75631 287 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 MYL9P24844 172 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 CAV3P56539 151 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 B3GALT5-AS1P59052 145 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 TGIF1Q15583 401 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 SPINK14Q6IE38 97 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 SLC18B1Q6NT16 456 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 OR13C5Q8NGS8 318 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 ASB17Q8WXJ9 295 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 RNF166Q96A37 237 aaPredicted RBP12.73□□□□□ -0.37
C9orf3-202ENST00000297979 PDCD1LG2Q9BQ51 273 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 ASCL3Q9NQ33 180 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 ING1Q9UK53 422 aaPredicted RBP12.73□□□□□ -0.37
C9orf3-202ENST00000297979 BOKQ9UMX3 212 aaPredicted RBP12.73□□□□□ -0.37
C9orf3-202ENST00000297979 RASD1Q9Y272 281 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 CMAHPQ9Y471 501 aa12.73□□□□□ -0.37
C9orf3-202ENST00000297979 HSPB2A8KAH6 182 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 EIF1BO60739 113 aaKnown RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 RAMP1O60894 148 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 NEURL1O76050 574 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 RPP14O95059 124 aaKnown RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 RFPL3SP0C7P2 107 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 ZNF43P17038 809 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 CSNK2A1P68400 391 aaPredicted RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 HSPB2Q16082 182 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 FAM27D1Q5T7N8 215 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 OTPQ5XKR4 325 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 PAMR1Q6UXH9 720 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 YRDCQ86U90 279 aaKnown RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 PARP16Q8N5Y8 322 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 FNDC8Q8TC99 324 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 RBP7Q96R05 134 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 TTYH2Q9BSA4 534 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 MRPL13Q9BYD1 178 aaKnown RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 PPIL3Q9H2H8 161 aaKnown RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 ZFP64Q9NPA5 681 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 NCR1O76036 304 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 IGHG1P01857 330 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 KLK2P20151 261 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 TNFSF8P32971 234 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 NKX2-5P52952 324 aaPredicted RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 NANOS3P60323 173 aaKnown RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 H3F3AP84243 136 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 MEP1BQ16820 701 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 LRRC69Q6ZNQ3 347 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 FAM83FQ8NEG4 500 aaPredicted RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 NOXO1Q8NFA2 376 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 SLC26A10Q8NG04 563 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 KCNE4Q8WWG9 221 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 SLC25A44Q96H78 314 aaPredicted RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 WDFY2Q96P53 400 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 SIGLEC12Q96PQ1 595 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 AMELYQ99218 206 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 SLC30A2Q9BRI3 323 aa12.72□□□□□ -0.37
C9orf3-202ENST00000297979 MRPS18CQ9Y3D5 142 aaKnown RBP12.72□□□□□ -0.37
C9orf3-202ENST00000297979 EP300Q09472 2414 aaPredicted RBP12.71□□□□□ -0.37
C9orf3-202ENST00000297979 IGKV1D-43A0A0B4J1Z2 117 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 PINLYPA6NC86 204 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 PGA4P0DJD7 388 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 PGA3P0DJD8 388 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 GDF1P27539 372 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 CLRN1P58418 232 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 RPS11P62280 158 aaKnown RBP eCLIP12.71□□□□□ -0.37
C9orf3-202ENST00000297979 ZMAT1Q5H9K5 638 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 LAX1Q8IWV1 398 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 ZNF454Q8N9F8 522 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 OR6X1Q8NH79 312 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 OR8B4Q96RC9 309 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 FAM173AQ9BQD7 235 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 NAA11Q9BSU3 229 aaPredicted RBP12.71□□□□□ -0.37
C9orf3-202ENST00000297979 RNF32Q9H0A6 362 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 KCNN3Q9UGI6 736 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 NCKAP5O14513 1909 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 SLC35F4A4IF30 521 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 GATBO75879 557 aaKnown RBP12.71□□□□□ -0.37
C9orf3-202ENST00000297979 MPZL1O95297 269 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 RPS2P15880 293 aaKnown RBP12.71□□□□□ -0.37
C9orf3-202ENST00000297979 ZNF823P16415 610 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 ZNF12P17014 697 aa12.71□□□□□ -0.37
C9orf3-202ENST00000297979 FOXO1Q12778 655 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms