RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	RRP46	P53256	223 aa	Predicted RBP	4.59	□□□□□ -1.67
UBX5	YDR330W	NSI1	Q12457	570 aa		4.59	□□□□□ -1.67
UBX5	YDR330W	RVB2	Q12464	471 aa	Known RBP	4.59	□□□□□ -1.67
UBX5	YDR330W	RMP1	Q12530	201 aa		4.59	□□□□□ -1.67
UBX5	YDR330W	NOT3	P06102	836 aa	Known RBP	4.58	□□□□□ -1.68
UBX5	YDR330W	AIM26	P32858	118 aa		4.58	□□□□□ -1.68
UBX5	YDR330W	DID4	P36108	232 aa		4.58	□□□□□ -1.68
UBX5	YDR330W	TRZ1	P36159	838 aa	Predicted RBP	4.58	□□□□□ -1.68
UBX5	YDR330W	TDA3	P38758	523 aa		4.58	□□□□□ -1.68
UBX5	YDR330W	CEP3	P40969	608 aa		4.58	□□□□□ -1.68
UBX5	YDR330W	RET2	P43621	546 aa		4.58	□□□□□ -1.68
UBX5	YDR330W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
UBX5	YDR330W	TRE1	Q08919	783 aa		4.58	□□□□□ -1.68
UBX5	YDR330W	AUS1	Q08409	1394 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	SPS1	P08458	490 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	SST2	P11972	698 aa	Known RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	KIN2	P13186	1147 aa	Known RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	ENA1	P13587	1091 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	NAM7	P30771	971 aa	Known RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	CYS3	P31373	394 aa	Known RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	SET5	P38890	526 aa	Known RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected
UBX5	YDR330W	NIT2	P47016	307 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	MPP10	P47083	593 aa	Known RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	HXT16	P47185	567 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	RAI1	P53063	387 aa	Known RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	YRB30	P53107	440 aa	Predicted RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	PRP43	P53131	767 aa	Known RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	YNL034W	P53963	612 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	YNL018C	P53976	612 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	ENA2	Q01896	1091 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	YPL062W	Q02781	134 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	LRS4	Q04087	347 aa	Known RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	TDA6	Q06466	467 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	HIM1	Q06674	414 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	ENA5	Q12691	1091 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	YBR182C-A	Q8TGU6	64 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	MPD2	Q99316	277 aa		4.57	□□□□□ -1.68
UBX5	YDR330W	ADE6	P38972	1358 aa	Known RBP	4.57	□□□□□ -1.68
UBX5	YDR330W	PRC1	P00729	532 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	SUI2	P20459	304 aa	Known RBP	4.56	□□□□□ -1.68
UBX5	YDR330W	YCL002C	P25565	263 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	CCR4	P31384	837 aa	Known RBP	4.56	□□□□□ -1.68
UBX5	YDR330W	TYE7	P33122	291 aa	Predicted RBP	4.56	□□□□□ -1.68
UBX5	YDR330W	RTR1	P40084	226 aa	Predicted RBP	4.56	□□□□□ -1.68
UBX5	YDR330W	CCT5	P40413	562 aa	Known RBP	4.56	□□□□□ -1.68
UBX5	YDR330W	YFL052W	P43551	465 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	PRY1	P47032	299 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	NPY1	P53164	384 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	PUS2	P53167	370 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	TGL2	P54857	326 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	YDR338C	Q05497	695 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
UBX5	YDR330W	THI72	Q08579	599 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	TY4B-H	P0C2J7	1802 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	TY4B-J	P47024	1803 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	APL1	P27351	700 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	STE13	P33894	931 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	FUI1	P38196	639 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	SAF1	P38352	637 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	FUN12	P39730	1002 aa	Known RBP	4.56	□□□□□ -1.68
UBX5	YDR330W	EMP65	P40085	556 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	GPP2	P40106	250 aa	Known RBP	4.56	□□□□□ -1.68
UBX5	YDR330W	OYE3	P41816	400 aa	Predicted RBP	4.56	□□□□□ -1.68
UBX5	YDR330W	UBC9	P50623	157 aa	Predicted RBP	4.56	□□□□□ -1.68
UBX5	YDR330W	PBP1	P53297	722 aa	Known RBP	4.56	□□□□□ -1.68
UBX5	YDR330W	YKR011C	Q02209	353 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	ATG16	Q03818	150 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	CRR1	Q05790	422 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	XYL2	Q07993	356 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	YPL277C	Q08989	487 aa		4.56	□□□□□ -1.68
UBX5	YDR330W	RPS24A	P0CX31	135 aa	Known RBP	4.55	□□□□□ -1.68
UBX5	YDR330W	RPS24B	P0CX32	135 aa	Known RBP	4.55	□□□□□ -1.68
UBX5	YDR330W	MSB1	P21339	1137 aa	Known RBP	4.55	□□□□□ -1.68
UBX5	YDR330W	PRD1	P25375	712 aa		4.55	□□□□□ -1.68
UBX5	YDR330W	COQ2	P32378	372 aa		4.55	□□□□□ -1.68
UBX5	YDR330W	PTC7	P38797	343 aa		4.55	□□□□□ -1.68
UBX5	YDR330W	PEX7	P39108	375 aa		4.55	□□□□□ -1.68
UBX5	YDR330W	GTS1	P40956	396 aa		4.55	□□□□□ -1.68
UBX5	YDR330W	HDA1	P53973	706 aa		4.55	□□□□□ -1.68
UBX5	YDR330W	MET14	Q02196	202 aa		4.55	□□□□□ -1.68
UBX5	YDR330W	ECM9	Q02202	377 aa		4.55	□□□□□ -1.68
UBX5	YDR330W	APC1	P53886	1748 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	HSF1	P10961	833 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	CHS2	P14180	963 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	MIH1	P23748	554 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	HSP78	P33416	811 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	NIC96	P34077	839 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	TAT1	P38085	619 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	BIT2	P38346	545 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	BFA1	P47113	574 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	PIP2	P52960	996 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	TAN1	P53072	289 aa	Predicted RBP	4.54	□□□□□ -1.68
UBX5	YDR330W	ENV11	P53246	860 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	PAP2	P53632	584 aa	Known RBP	4.54	□□□□□ -1.68
UBX5	YDR330W	NSG2	P53898	299 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	UBX4	P54730	416 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	PTA1	Q01329	785 aa	Predicted RBP	4.54	□□□□□ -1.68
UBX5	YDR330W	RSM24	Q03976	319 aa		4.54	□□□□□ -1.68
UBX5	YDR330W	ECM16	Q04217	1267 aa	Known RBP	4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 23.2 ms