RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 WASHC2CQ9Y4E1 1318 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 TUFMP49411 452 aaKnown RBP4.09□□□□□ -1.75
SCN1A-221ENST00000641996 BARGINQ6ZT62 677 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 DNAJB7Q7Z6W7 309 aaPredicted RBP4.09□□□□□ -1.75
SCN1A-221ENST00000641996 IFT122Q9HBG6 1241 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 ANGPTL3Q9Y5C1 460 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 AP2B1P63010 937 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 TAF12Q16514 161 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 UBXN4Q92575 508 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 MYO15BQ96JP2 1530 aa4.09□□□□□ -1.75
SCN1A-221ENST00000641996 PFDN1O60925 122 aa4.09□□□□□ -1.76
SCN1A-221ENST00000641996 PDCD7Q8N8D1 485 aaKnown RBP4.09□□□□□ -1.76
SCN1A-221ENST00000641996 MARSP56192 900 aaKnown RBP4.09□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC174Q6PII3 467 aa4.09□□□□□ -1.76
SCN1A-221ENST00000641996 BBOF1Q8ND07 529 aa4.09□□□□□ -1.76
SCN1A-221ENST00000641996 TNIP2Q8NFZ5 429 aa4.09□□□□□ -1.76
SCN1A-221ENST00000641996 AP1M1Q9BXS5 423 aa4.09□□□□□ -1.76
SCN1A-221ENST00000641996 HPS4Q9NQG7 708 aa4.09□□□□□ -1.76
SCN1A-221ENST00000641996 PRKAG2Q9UGJ0 569 aa4.09□□□□□ -1.76
SCN1A-221ENST00000641996 ZNF652Q9Y2D9 606 aa4.09□□□□□ -1.76
SCN1A-221ENST00000641996 DMGDHQ9UI17 866 aaKnown RBP4.09□□□□□ -1.76
SCN1A-221ENST00000641996 RP1L1Q8IWN7 2480 aaPredicted RBP4.09□□□□□ -1.76
SCN1A-221ENST00000641996 A0A1B0GUA9 196 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 RCN1Q15293 331 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 PNISRQ8TF01 805 aaKnown RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 TSG101Q99816 390 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 LNPKQ9C0E8 428 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 CACNA1FO60840 1977 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 NFE2L2Q16236 605 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 KIAA1522Q9P206 1035 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 BPNT1O95861 308 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 MYCP01106 439 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 TMF1P82094 1093 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 SMAD1Q15797 465 aaKnown RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 TAB3Q8N5C8 712 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 LRGUKQ96M69 825 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 TTC12Q9H892 705 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 FAM184BQ9ULE4 1060 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 PAXBP1Q9Y5B6 917 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 SNX5Q9Y5X3 404 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 MCM3P25205 808 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 MRE11P49959 708 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 ANKRD1Q15327 319 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 KRT222Q8N1A0 295 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 HDLBPQ00341 1268 aaKnown RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 ISM2Q6H9L7 571 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC25Q86WR0 208 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 WDR63Q8IWG1 891 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.08□□□□□ -1.763e-7■■■□□ 19
SCN1A-221ENST00000641996 WASHC2AQ641Q2 1341 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 DDHD2O94830 711 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 MRPS35P82673 323 aaKnown RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 DIXDC1Q155Q3 683 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 LRRFIP1Q32MZ4 808 aaKnown RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 HABP4Q5JVS0 413 aaKnown RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 ARHGEF25Q86VW2 580 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 DCAF11Q8TEB1 546 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 BEGAINQ9BUH8 593 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 ZBBXA8MT70 800 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 GGT6Q6P531 493 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 CEP126Q9P2H0 1117 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 FAN1Q9Y2M0 1017 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 DHX8Q14562 1220 aaKnown RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 CEP57Q86XR8 500 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 IPCEF1Q8WWN9 437 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 OSBPL10Q9BXB5 764 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 RFC1P35251 1148 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 SLF2Q8IX21 1173 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 MSANTD4Q8NCY6 345 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 CUL9Q8IWT3 2517 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 GOLGA6L7A0A1B0GV03 622 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 DIAPH2O60879 1101 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 LMOD1P29536 600 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 MLLT1Q03111 559 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 MAF1Q9H063 256 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 TP53BP1Q12888 1972 aaPredicted RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 SMC5Q8IY18 1101 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 HPS3Q969F9 1004 aa4.08□□□□□ -1.76
SCN1A-221ENST00000641996 LRRFIP2Q9Y608 721 aaKnown RBP4.08□□□□□ -1.76
SCN1A-221ENST00000641996 hCG_1642624A0A1W2PR95 340 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 RBM47A0AV96 593 aaKnown RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 UBE4AQ14139 1066 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 HSP90B2PQ58FF3 399 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 FAM161BQ96MY7 647 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 ALDH8A1Q9H2A2 487 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 ROCK1Q13464 1354 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 C10orf76Q5T2E6 689 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 CPLX2Q6PUV4 134 aaKnown RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 OLFM4Q6UX06 510 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 RUFY3Q7L099 469 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 NT5DC4Q86YG4 428 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 RUBCNQ92622 972 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 NSRP1Q9H0G5 558 aaKnown RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 NLRP2Q9NX02 1062 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 F8W031 263 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 THAP12O43422 761 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 IL33O95760 270 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 MAN1A1P33908 653 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 KLHL10Q6JEL2 608 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms