RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 CLEC17AQ6ZS10 378 aa23.59■■□□□ 1.37
CHRNA4-209ENST00000627000 INTS4Q96HW7 963 aaKnown RBP23.59■■□□□ 1.37
CHRNA4-209ENST00000627000 HCLS1P14317 486 aaPredicted RBP23.58■■□□□ 1.37
CHRNA4-209ENST00000627000 TM6SF1Q9BZW5 370 aa23.58■■□□□ 1.37
CHRNA4-209ENST00000627000 MCMDC2Q4G0Z9 681 aa23.58■■□□□ 1.36
CHRNA4-209ENST00000627000 GORABQ5T7V8 394 aa23.58■■□□□ 1.36
CHRNA4-209ENST00000627000 LINC00116Q8NCU8 138 aa23.58■■□□□ 1.36
CHRNA4-209ENST00000627000 GZF1Q9H116 711 aaPredicted RBP23.58■■□□□ 1.36
CHRNA4-209ENST00000627000 CNNM1Q9NRU3 951 aa23.58■■□□□ 1.36
CHRNA4-209ENST00000627000 IL27Q8NEV9 243 aa23.57■■□□□ 1.36
CHRNA4-209ENST00000627000 PDRG1Q9NUG6 133 aa23.57■■□□□ 1.36
CHRNA4-209ENST00000627000 TTC39AQ5SRH9 613 aa23.57■■□□□ 1.36
CHRNA4-209ENST00000627000 CYP46A1Q9Y6A2 500 aa23.57■■□□□ 1.36
CHRNA4-209ENST00000627000 SH3TC1Q8TE82 1336 aa23.56■■□□□ 1.36
CHRNA4-209ENST00000627000 SCARF1Q14162 830 aa23.56■■□□□ 1.36
CHRNA4-209ENST00000627000 ATP2B3Q16720 1220 aa23.56■■□□□ 1.36
CHRNA4-209ENST00000627000 CCDC158Q5M9N0 1113 aa23.56■■□□□ 1.36
CHRNA4-209ENST00000627000 FAM182BQ5T319 152 aa23.56■■□□□ 1.36
CHRNA4-209ENST00000627000 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.56■■□□□ 1.36
CHRNA4-209ENST00000627000 LIMCH1Q9UPQ0 1083 aa23.56■■□□□ 1.36
CHRNA4-209ENST00000627000 RPAP1Q9BWH6 1393 aaPredicted RBP23.56■■□□□ 1.36
CHRNA4-209ENST00000627000 LARGE1O95461 756 aa23.55■■□□□ 1.36
CHRNA4-209ENST00000627000 FKBP4Q02790 459 aaKnown RBP eCLIP23.55■■□□□ 1.36
CHRNA4-209ENST00000627000 VPS53Q5VIR6 699 aa23.55■■□□□ 1.36
CHRNA4-209ENST00000627000 FOXD4L5Q5VV16 416 aaPredicted RBP23.55■■□□□ 1.36
CHRNA4-209ENST00000627000 FOXD4L4Q8WXT5 416 aaPredicted RBP23.55■■□□□ 1.36
CHRNA4-209ENST00000627000 UTP14AQ9BVJ6 771 aaKnown RBP23.55■■□□□ 1.36
CHRNA4-209ENST00000627000 SPATA31A6Q5VVP1 1343 aa23.55■■□□□ 1.36
CHRNA4-209ENST00000627000 USPL1Q5W0Q7 1092 aa23.55■■□□□ 1.36
CHRNA4-209ENST00000627000 NIP7Q9Y221 180 aaKnown RBP eCLIP23.55■■□□□ 1.36
CHRNA4-209ENST00000627000 SPEF2Q9C093 1822 aa23.54■■□□□ 1.36
CHRNA4-209ENST00000627000 RNF20Q5VTR2 975 aa23.54■■□□□ 1.36
CHRNA4-209ENST00000627000 VGLL2Q8N8G2 317 aa23.54■■□□□ 1.36
CHRNA4-209ENST00000627000 DDX60Q8IY21 1712 aaKnown RBP23.54■■□□□ 1.36
CHRNA4-209ENST00000627000 SMIM5Q71RC9 77 aa23.54■■□□□ 1.36
CHRNA4-209ENST00000627000 CHAMP1Q96JM3 812 aa23.54■■□□□ 1.36
CHRNA4-209ENST00000627000 ZNF831Q5JPB2 1677 aa23.53■■□□□ 1.36
CHRNA4-209ENST00000627000 NTSR2O95665 410 aa23.52■■□□□ 1.36
CHRNA4-209ENST00000627000 PARP10Q53GL7 1025 aa23.52■■□□□ 1.36
CHRNA4-209ENST00000627000 ZMYM1Q5SVZ6 1142 aa23.52■■□□□ 1.36
CHRNA4-209ENST00000627000 PI16Q6UXB8 463 aa23.52■■□□□ 1.36
CHRNA4-209ENST00000627000 BCORQ6W2J9 1755 aa23.52■■□□□ 1.36
CHRNA4-209ENST00000627000 THSD7AQ9UPZ6 1657 aa23.52■■□□□ 1.36
CHRNA4-209ENST00000627000 MCTP1Q6DN14 999 aa23.52■■□□□ 1.36
CHRNA4-209ENST00000627000 TCEANC2Q96MN5 208 aa23.52■■□□□ 1.36
CHRNA4-209ENST00000627000 SEC31BQ9NQW1 1179 aa23.52■■□□□ 1.36
CHRNA4-209ENST00000627000 HELLSQ9NRZ9 838 aa23.52■■□□□ 1.36
CHRNA4-209ENST00000627000 ZAP70P43403 619 aa23.51■■□□□ 1.35
CHRNA4-209ENST00000627000 AK7Q96M32 723 aa23.51■■□□□ 1.35
CHRNA4-209ENST00000627000 LRP5O75197 1615 aa23.51■■□□□ 1.35
CHRNA4-209ENST00000627000 BTAF1O14981 1849 aa23.51■■□□□ 1.35
CHRNA4-209ENST00000627000 RNF113AO15541 343 aaKnown RBP23.51■■□□□ 1.35
CHRNA4-209ENST00000627000 PDE8BO95263 885 aa23.51■■□□□ 1.35
CHRNA4-209ENST00000627000 PSMA5P28066 241 aa23.51■■□□□ 1.35
CHRNA4-209ENST00000627000 HELBQ8NG08 1087 aaPredicted RBP23.51■■□□□ 1.35
CHRNA4-209ENST00000627000 HMG20BQ9P0W2 317 aa23.51■■□□□ 1.35
CHRNA4-209ENST00000627000 BRD1O95696 1058 aa23.5■■□□□ 1.35
CHRNA4-209ENST00000627000 MAST3O60307 1309 aa23.5■■□□□ 1.35
CHRNA4-209ENST00000627000 DTNBO60941 627 aa23.5■■□□□ 1.35
CHRNA4-209ENST00000627000 TSGA10IPQ3SY00 556 aa23.5■■□□□ 1.35
CHRNA4-209ENST00000627000 BLOC1S2Q6QNY1 142 aa23.5■■□□□ 1.35
CHRNA4-209ENST00000627000 U3KPZ7 1027 aaPredicted RBP23.5■■□□□ 1.35
CHRNA4-209ENST00000627000 AKAP11Q9UKA4 1901 aa23.49■■□□□ 1.35
CHRNA4-209ENST00000627000 GOLGA6L22H0YM25 854 aa23.49■■□□□ 1.35
CHRNA4-209ENST00000627000 CYP21A2P08686 494 aa23.48■■□□□ 1.35
CHRNA4-209ENST00000627000 RPS6KB1P23443 525 aa23.48■■□□□ 1.35
CHRNA4-209ENST00000627000 CCDC83Q8IWF9 413 aa23.48■■□□□ 1.35
CHRNA4-209ENST00000627000 M0R2C6 588 aa23.48■■□□□ 1.35
CHRNA4-209ENST00000627000 MCAMP43121 646 aa23.48■■□□□ 1.35
CHRNA4-209ENST00000627000 ST3GAL1Q11201 340 aa23.48■■□□□ 1.35
CHRNA4-209ENST00000627000 TPCN1Q9ULQ1 816 aa23.48■■□□□ 1.35
CHRNA4-209ENST00000627000 ME3Q16798 604 aa23.47■■□□□ 1.35
CHRNA4-209ENST00000627000 MEX3CQ5U5Q3 659 aaKnown RBP23.47■■□□□ 1.35
CHRNA4-209ENST00000627000 CERKQ8TCT0 537 aa23.47■■□□□ 1.35
CHRNA4-209ENST00000627000 OSBP2Q969R2 916 aa23.47■■□□□ 1.35
CHRNA4-209ENST00000627000 ZNF652Q9Y2D9 606 aa23.47■■□□□ 1.35
CHRNA4-209ENST00000627000 LAMB2P55268 1798 aa23.47■■□□□ 1.35
CHRNA4-209ENST00000627000 PTMSP20962 102 aa23.47■■□□□ 1.35
CHRNA4-209ENST00000627000 TICAM2Q86XR7 235 aa23.47■■□□□ 1.35
CHRNA4-209ENST00000627000 NHSQ6T4R5 1651 aa23.46■■□□□ 1.35
CHRNA4-209ENST00000627000 ABCC12Q96J65 1359 aa23.46■■□□□ 1.35
CHRNA4-209ENST00000627000 CNTNAP4Q9C0A0 1308 aa23.46■■□□□ 1.35
CHRNA4-209ENST00000627000 SNAP23O00161 211 aa23.46■■□□□ 1.35
CHRNA4-209ENST00000627000 HSPA1LP34931 641 aa23.46■■□□□ 1.35
CHRNA4-209ENST00000627000 NECAB1Q8N987 351 aa23.45■■□□□ 1.35
CHRNA4-209ENST00000627000 ZSCAN31Q96LW9 406 aaPredicted RBP23.45■■□□□ 1.35
CHRNA4-209ENST00000627000 MROH5Q6ZUA9 1318 aa23.45■■□□□ 1.34
CHRNA4-209ENST00000627000 COL4A1P02462 1669 aa23.45■■□□□ 1.34
CHRNA4-209ENST00000627000 A0A0G2JLW4 131 aa23.45■■□□□ 1.34
CHRNA4-209ENST00000627000 HSPD1P10809 573 aaKnown RBP23.45■■□□□ 1.34
CHRNA4-209ENST00000627000 PHKA1P46020 1223 aa23.45■■□□□ 1.34
CHRNA4-209ENST00000627000 SKOR2Q2VWA4 1001 aaPredicted RBP23.45■■□□□ 1.34
CHRNA4-209ENST00000627000 CLEC4GQ6UXB4 293 aa23.45■■□□□ 1.34
CHRNA4-209ENST00000627000 GJD4Q96KN9 370 aaPredicted RBP23.45■■□□□ 1.34
CHRNA4-209ENST00000627000 DSCC1Q9BVC3 393 aa23.45■■□□□ 1.34
CHRNA4-209ENST00000627000 LMBRD1Q9NUN5 540 aa23.45■■□□□ 1.34
CHRNA4-209ENST00000627000 FGFR2P21802 821 aa23.44■■□□□ 1.34
CHRNA4-209ENST00000627000 TOB2Q14106 344 aaPredicted RBP23.44■■□□□ 1.34
CHRNA4-209ENST00000627000 CCDC152Q4G0S7 254 aa23.44■■□□□ 1.34
CHRNA4-209ENST00000627000 NEK1Q96PY6 1258 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms