RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 F8W735 103 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-208ENST00000625916 C16orf46Q6P387 395 aa6.6□□□□□ -1.35
SCN1A-208ENST00000625916 DZIP1LQ8IYY4 767 aaKnown RBP6.6□□□□□ -1.35
SCN1A-208ENST00000625916 TMEM130Q8N3G9 435 aa6.6□□□□□ -1.35
SCN1A-208ENST00000625916 SAP130Q9H0E3 1048 aa6.6□□□□□ -1.35
SCN1A-208ENST00000625916 TRIM33Q9UPN9 1127 aa6.6□□□□□ -1.35
SCN1A-208ENST00000625916 UBAP1LF5GYI3 381 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 HOXD8P13378 290 aaPredicted RBP6.59□□□□□ -1.35
SCN1A-208ENST00000625916 GLB1P16278 677 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 FSTP19883 344 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 SETDB1Q15047 1291 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 CACTIN-AS1Q8N1I8 211 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 PIK3R5Q8WYR1 880 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 SPACA7Q96KW9 195 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 MKNK1Q9BUB5 465 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 MUC3BQ9H195 1237 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 FAM13BQ9NYF5 915 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 PPME1Q9Y570 386 aa6.59□□□□□ -1.35
SCN1A-208ENST00000625916 TRIP4Q15650 581 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-208ENST00000625916 AGGF1Q8N302 714 aaeCLIP6.58□□□□□ -1.36
SCN1A-208ENST00000625916 PCMTD2Q9NV79 361 aa6.58□□□□□ -1.36
SCN1A-208ENST00000625916 PTCD1O75127 700 aaKnown RBP6.57□□□□□ -1.36
SCN1A-208ENST00000625916 HYAL2Q12891 473 aa6.57□□□□□ -1.36
SCN1A-208ENST00000625916 OCLNQ16625 522 aa6.57□□□□□ -1.36
SCN1A-208ENST00000625916 SLC51AQ86UW1 340 aa6.57□□□□□ -1.36
SCN1A-208ENST00000625916 ZMIZ1Q9ULJ6 1067 aa6.57□□□□□ -1.36
SCN1A-208ENST00000625916 LINC01387J3KSC0 135 aa6.56□□□□□ -1.36
SCN1A-208ENST00000625916 SMNDC1O75940 238 aaKnown RBP eCLIP6.56□□□□□ -1.36
SCN1A-208ENST00000625916 SSTR4P31391 388 aa6.56□□□□□ -1.36
SCN1A-208ENST00000625916 SCNN1AP37088 669 aa6.56□□□□□ -1.36
SCN1A-208ENST00000625916 NAA30Q147X3 362 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-208ENST00000625916 TTC39BQ5VTQ0 682 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-208ENST00000625916 CEP135Q66GS9 1140 aa6.56□□□□□ -1.36
SCN1A-208ENST00000625916 OR13H1Q8NG92 308 aa6.56□□□□□ -1.36
SCN1A-208ENST00000625916 STK32AQ8WU08 396 aa6.56□□□□□ -1.36
SCN1A-208ENST00000625916 COL26A1Q96A83 441 aa6.56□□□□□ -1.36
SCN1A-208ENST00000625916 LACRTQ9GZZ8 138 aa6.56□□□□□ -1.36
SCN1A-208ENST00000625916 FNDC3AQ9Y2H6 1198 aaKnown RBP6.56□□□□□ -1.36
SCN1A-208ENST00000625916 CDC25BP30305 580 aa6.55□□□□□ -1.36
SCN1A-208ENST00000625916 ATP11AP98196 1134 aa6.55□□□□□ -1.36
SCN1A-208ENST00000625916 ELOAQ14241 798 aaKnown RBP6.55□□□□□ -1.36
SCN1A-208ENST00000625916 FAM26DQ5JW98 314 aa6.55□□□□□ -1.36
SCN1A-208ENST00000625916 TXNDC11Q6PKC3 985 aa6.55□□□□□ -1.36
SCN1A-208ENST00000625916 RAXQ9Y2V3 346 aa6.55□□□□□ -1.36
SCN1A-208ENST00000625916 TNFRSF10BO14763 440 aa6.54□□□□□ -1.36
SCN1A-208ENST00000625916 CDC27P30260 824 aa6.54□□□□□ -1.36
SCN1A-208ENST00000625916 ZAP70P43403 619 aa6.54□□□□□ -1.36
SCN1A-208ENST00000625916 COL13A1Q5TAT6 717 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-208ENST00000625916 Q6ZS46 218 aa6.54□□□□□ -1.36
SCN1A-208ENST00000625916 CAPN12Q6ZSI9 719 aa6.54□□□□□ -1.36
SCN1A-208ENST00000625916 ACAD11Q709F0 780 aa6.54□□□□□ -1.36
SCN1A-208ENST00000625916 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.54□□□□□ -1.36
SCN1A-208ENST00000625916 GALNT11Q8NCW6 608 aa6.54□□□□□ -1.36
SCN1A-208ENST00000625916 GPR152Q8TDT2 470 aa6.54□□□□□ -1.36
SCN1A-208ENST00000625916 CXXC1Q9P0U4 656 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-208ENST00000625916 STOML1Q9UBI4 398 aa6.54□□□□□ -1.36
SCN1A-208ENST00000625916 FAM177BA6PVY3 158 aa6.53□□□□□ -1.36
SCN1A-208ENST00000625916 GSC2O15499 205 aa6.53□□□□□ -1.36
SCN1A-208ENST00000625916 CD68P34810 354 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-208ENST00000625916 FAM69CQ0P6D2 419 aa6.53□□□□□ -1.36
SCN1A-208ENST00000625916 FAM117BQ6P1L5 589 aa6.53□□□□□ -1.36
SCN1A-208ENST00000625916 CARD10Q9BWT7 1032 aa6.53□□□□□ -1.36
SCN1A-208ENST00000625916 CEP41Q9BYV8 373 aa6.53□□□□□ -1.36
SCN1A-208ENST00000625916 RASSF4Q9H2L5 321 aa6.53□□□□□ -1.36
SCN1A-208ENST00000625916 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-208ENST00000625916 DHX15O43143 795 aaKnown RBP6.52□□□□□ -1.37
SCN1A-208ENST00000625916 WISP1O95388 367 aa6.52□□□□□ -1.37
SCN1A-208ENST00000625916 IGLV1-40P01703 118 aa6.52□□□□□ -1.37
SCN1A-208ENST00000625916 NCAPG2Q86XI2 1143 aa6.52□□□□□ -1.37
SCN1A-208ENST00000625916 ABTB2Q8N961 1025 aa6.52□□□□□ -1.37
SCN1A-208ENST00000625916 UBL7Q96S82 380 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-208ENST00000625916 ABI2Q9NYB9 513 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-208ENST00000625916 STIM2Q9P246 746 aa6.52□□□□□ -1.37
SCN1A-208ENST00000625916 DUOXA2Q1HG44 320 aa6.51□□□□□ -1.37
SCN1A-208ENST00000625916 UTP4Q969X6 686 aaKnown RBP6.51□□□□□ -1.37
SCN1A-208ENST00000625916 FSCN2O14926 492 aa6.5□□□□□ -1.37
SCN1A-208ENST00000625916 CYP2E1P05181 493 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-208ENST00000625916 PTPRAP18433 802 aa6.5□□□□□ -1.37
SCN1A-208ENST00000625916 CD97P48960 835 aa6.5□□□□□ -1.37
SCN1A-208ENST00000625916 TMEM164Q5U3C3 297 aa6.5□□□□□ -1.37
SCN1A-208ENST00000625916 MCTP1Q6DN14 999 aa6.5□□□□□ -1.37
SCN1A-208ENST00000625916 KRTAP1-3Q8IUG1 177 aa6.5□□□□□ -1.37
SCN1A-208ENST00000625916 KLHL23Q8NBE8 558 aa6.5□□□□□ -1.37
SCN1A-208ENST00000625916 PBX4Q9BYU1 374 aa6.5□□□□□ -1.37
SCN1A-208ENST00000625916 SH2B1Q9NRF2 756 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-208ENST00000625916 KCNK4Q9NYG8 393 aa6.5□□□□□ -1.37
SCN1A-208ENST00000625916 ZBTB39O15060 712 aa6.49□□□□□ -1.37
SCN1A-208ENST00000625916 COBLO75128 1261 aa6.49□□□□□ -1.37
SCN1A-208ENST00000625916 KIF4AO95239 1232 aa6.49□□□□□ -1.37
SCN1A-208ENST00000625916 ATG7O95352 703 aa6.49□□□□□ -1.37
SCN1A-208ENST00000625916 TGFB1P01137 390 aa6.49□□□□□ -1.37
SCN1A-208ENST00000625916 UVSSAQ2YD98 709 aa6.49□□□□□ -1.37
SCN1A-208ENST00000625916 ARMC10Q8N2F6 343 aa6.49□□□□□ -1.37
SCN1A-208ENST00000625916 EPHA1P21709 976 aa6.48□□□□□ -1.37
SCN1A-208ENST00000625916 CABP4P57796 275 aa6.48□□□□□ -1.37
SCN1A-208ENST00000625916 PDE12Q6L8Q7 609 aaKnown RBP6.48□□□□□ -1.37
SCN1A-208ENST00000625916 ZNF438Q7Z4V0 828 aa6.48□□□□□ -1.37
SCN1A-208ENST00000625916 CLP1Q92989 425 aaKnown RBP6.48□□□□□ -1.37
SCN1A-208ENST00000625916 KRTAP4-12Q9BQ66 201 aa6.48□□□□□ -1.37
SCN1A-208ENST00000625916 ELP3Q9H9T3 547 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms