RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 CNGB1Q14028 1251 aaPredicted RBP18.49■□□□□ 0.55
SNX1-214ENST00000625244 PRAMEF18Q5VWM3 479 aa18.49■□□□□ 0.55
SNX1-214ENST00000625244 TMC4Q7Z404 712 aa18.49■□□□□ 0.55
SNX1-214ENST00000625244 TRIM17Q9Y577 477 aa18.49■□□□□ 0.55
SNX1-214ENST00000625244 HTATSF1O43719 755 aaKnown RBP18.48■□□□□ 0.55
SNX1-214ENST00000625244 ZNF280AP59817 542 aaPredicted RBP18.48■□□□□ 0.55
SNX1-214ENST00000625244 THUMPD2Q9BTF0 503 aaKnown RBP18.48■□□□□ 0.55
SNX1-214ENST00000625244 ANKRD36CQ5JPF3 1778 aa18.47■□□□□ 0.55
SNX1-214ENST00000625244 LRRC37AA6NMS7 1700 aa18.47■□□□□ 0.55
SNX1-214ENST00000625244 GPSM2P81274 684 aa18.47■□□□□ 0.55
SNX1-214ENST00000625244 OTOP1Q7RTM1 612 aa18.47■□□□□ 0.55
SNX1-214ENST00000625244 LRP10Q7Z4F1 713 aa18.47■□□□□ 0.55
SNX1-214ENST00000625244 SREBF2Q12772 1141 aa18.46■□□□□ 0.55
SNX1-214ENST00000625244 NLRP10Q86W26 655 aa18.46■□□□□ 0.55
SNX1-214ENST00000625244 CELF1Q92879 486 aaKnown RBP18.46■□□□□ 0.55
SNX1-214ENST00000625244 SCN9AQ15858 1988 aa18.45■□□□□ 0.54
SNX1-214ENST00000625244 TTLL12Q14166 644 aaPredicted RBP18.45■□□□□ 0.54
SNX1-214ENST00000625244 LAMA3Q16787 3333 aa18.45■□□□□ 0.54
SNX1-214ENST00000625244 PITPNM2Q9BZ72 1349 aa18.45■□□□□ 0.54
SNX1-214ENST00000625244 PDIA6Q15084 440 aa18.44■□□□□ 0.54
SNX1-214ENST00000625244 SLC17A8Q8NDX2 589 aa18.44■□□□□ 0.54
SNX1-214ENST00000625244 TBC1D16Q8TBP0 767 aa18.44■□□□□ 0.54
SNX1-214ENST00000625244 ZNF428Q96B54 188 aa18.44■□□□□ 0.54
SNX1-214ENST00000625244 OTUD5Q96G74 571 aa18.44■□□□□ 0.54
SNX1-214ENST00000625244 EYA3Q99504 573 aa18.44■□□□□ 0.54
SNX1-214ENST00000625244 TRMT112Q9UI30 125 aaKnown RBP18.44■□□□□ 0.54
SNX1-214ENST00000625244 SH3TC1Q8TE82 1336 aa18.44■□□□□ 0.54
SNX1-214ENST00000625244 U2AF1L5P0DN76 240 aaPredicted RBP18.43■□□□□ 0.54
SNX1-214ENST00000625244 U2AF1Q01081 240 aaKnown RBP eCLIP18.43■□□□□ 0.54
SNX1-214ENST00000625244 PNISRQ8TF01 805 aaKnown RBP18.43■□□□□ 0.54
SNX1-214ENST00000625244 MYOZ2Q9NPC6 264 aa18.43■□□□□ 0.54
SNX1-214ENST00000625244 PTPN22Q9Y2R2 807 aa18.43■□□□□ 0.54
SNX1-214ENST00000625244 ERBB4Q15303 1308 aa18.43■□□□□ 0.54
SNX1-214ENST00000625244 RBBP6Q7Z6E9 1792 aaKnown RBP18.42■□□□□ 0.54
SNX1-214ENST00000625244 H0YGN5 161 aa18.42■□□□□ 0.54
SNX1-214ENST00000625244 ANXA1P04083 346 aa18.42■□□□□ 0.54
SNX1-214ENST00000625244 PTPN12Q05209 780 aaKnown RBP18.42■□□□□ 0.54
SNX1-214ENST00000625244 PROSER3Q2NL68 480 aa18.42■□□□□ 0.54
SNX1-214ENST00000625244 RSBN1LQ6PCB5 846 aaPredicted RBP18.42■□□□□ 0.54
SNX1-214ENST00000625244 AGBL3Q8NEM8 1001 aa18.42■□□□□ 0.54
SNX1-214ENST00000625244 ARMC5Q96C12 935 aa18.42■□□□□ 0.54
SNX1-214ENST00000625244 KDM3BQ7LBC6 1761 aa18.42■□□□□ 0.54
SNX1-214ENST00000625244 COL4A1P02462 1669 aa18.41■□□□□ 0.54
SNX1-214ENST00000625244 GMLQ99445 158 aa18.41■□□□□ 0.54
SNX1-214ENST00000625244 ALDH1A1P00352 501 aa18.4■□□□□ 0.54
SNX1-214ENST00000625244 ZC3H12CQ9C0D7 883 aaKnown RBP18.4■□□□□ 0.54
SNX1-214ENST00000625244 NUDCQ9Y266 331 aa18.4■□□□□ 0.54
SNX1-214ENST00000625244 ZNF609O15014 1411 aa18.4■□□□□ 0.54
SNX1-214ENST00000625244 USP17L8P0C7I0 530 aa18.39■□□□□ 0.53
SNX1-214ENST00000625244 TCIRG1Q13488 830 aa18.39■□□□□ 0.53
SNX1-214ENST00000625244 NBPF9Q3BBW0 867 aa18.39■□□□□ 0.53
SNX1-214ENST00000625244 HSP90AB3PQ58FF7 597 aa18.39■□□□□ 0.53
SNX1-214ENST00000625244 SPRYD7Q5W111 196 aa18.39■□□□□ 0.53
SNX1-214ENST00000625244 CFAP53Q96M91 514 aa18.39■□□□□ 0.53
SNX1-214ENST00000625244 DDX60Q8IY21 1712 aaKnown RBP18.39■□□□□ 0.53
SNX1-214ENST00000625244 EIF2S2P20042 333 aaKnown RBP18.38■□□□□ 0.53
SNX1-214ENST00000625244 PRKG1Q13976 671 aa18.38■□□□□ 0.53
SNX1-214ENST00000625244 IFNL1Q8IU54 200 aa18.38■□□□□ 0.53
SNX1-214ENST00000625244 CD99L2Q8TCZ2 262 aa18.38■□□□□ 0.53
SNX1-214ENST00000625244 G3V3G9 751 aa18.37■□□□□ 0.53
SNX1-214ENST00000625244 CAP1Q01518 475 aa18.37■□□□□ 0.53
SNX1-214ENST00000625244 AIMP1Q12904 312 aaKnown RBP18.37■□□□□ 0.53
SNX1-214ENST00000625244 SF3B3Q15393 1217 aaKnown RBP18.37■□□□□ 0.53
SNX1-214ENST00000625244 DCAF8Q5TAQ9 597 aa18.37■□□□□ 0.53
SNX1-214ENST00000625244 CHRDL2Q6WN34 429 aa18.37■□□□□ 0.53
SNX1-214ENST00000625244 COPS6Q7L5N1 327 aa18.37■□□□□ 0.53
SNX1-214ENST00000625244 NECTIN2Q92692 538 aa18.37■□□□□ 0.53
SNX1-214ENST00000625244 TMEM106CQ9BVX2 250 aa18.37■□□□□ 0.53
SNX1-214ENST00000625244 UFL1O94874 794 aa18.36■□□□□ 0.53
SNX1-214ENST00000625244 NF2P35240 595 aa18.36■□□□□ 0.53
SNX1-214ENST00000625244 UNC80Q8N2C7 3258 aa18.36■□□□□ 0.53
SNX1-214ENST00000625244 ERO1AQ96HE7 468 aa18.36■□□□□ 0.53
SNX1-214ENST00000625244 IGF2BP3O00425 579 aaKnown RBP eCLIP18.35■□□□□ 0.53
SNX1-214ENST00000625244 LDLRAD1Q5T700 205 aa18.35■□□□□ 0.53
SNX1-214ENST00000625244 ARMC9Q7Z3E5 817 aa18.35■□□□□ 0.53
SNX1-214ENST00000625244 XAGE3Q8WTP9 111 aa18.35■□□□□ 0.53
SNX1-214ENST00000625244 ZNF333Q96JL9 665 aa18.35■□□□□ 0.53
SNX1-214ENST00000625244 EFCC1Q9HA90 598 aa18.35■□□□□ 0.53
SNX1-214ENST00000625244 PODXL2Q9NZ53 605 aa18.35■□□□□ 0.53
SNX1-214ENST00000625244 RBM27Q9P2N5 1060 aaKnown RBP18.35■□□□□ 0.53
SNX1-214ENST00000625244 MANSC4A6NHS7 340 aaPredicted RBP18.34■□□□□ 0.53
SNX1-214ENST00000625244 RPS8P62241 208 aaKnown RBP18.34■□□□□ 0.53
SNX1-214ENST00000625244 FAM89AQ96GI7 184 aa18.34■□□□□ 0.53
SNX1-214ENST00000625244 FZD1Q9UP38 647 aa18.34■□□□□ 0.53
SNX1-214ENST00000625244 INHBEP58166 350 aa18.33■□□□□ 0.52
SNX1-214ENST00000625244 GGA1Q9UJY5 639 aa18.33■□□□□ 0.52
SNX1-214ENST00000625244 WNT10BO00744 389 aa18.32■□□□□ 0.52
SNX1-214ENST00000625244 CRHR2Q13324 411 aa18.32■□□□□ 0.52
SNX1-214ENST00000625244 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.32■□□□□ 0.52
SNX1-214ENST00000625244 ANKIB1Q9P2G1 1089 aa18.32■□□□□ 0.52
SNX1-214ENST00000625244 ANGEL1Q9UNK9 670 aaKnown RBP18.32■□□□□ 0.52
SNX1-214ENST00000625244 USP17L3A6NCW0 530 aa18.31■□□□□ 0.52
SNX1-214ENST00000625244 USP17L4A6NCW7 530 aa18.31■□□□□ 0.52
SNX1-214ENST00000625244 USP17L1Q7RTZ2 530 aa18.31■□□□□ 0.52
SNX1-214ENST00000625244 MXD3Q9BW11 206 aa18.31■□□□□ 0.52
SNX1-214ENST00000625244 PCGF6Q9BYE7 350 aa18.31■□□□□ 0.52
SNX1-214ENST00000625244 RTL5Q5HYW3 569 aaPredicted RBP18.3■□□□□ 0.52
SNX1-214ENST00000625244 SLC10A4Q96EP9 437 aa18.3■□□□□ 0.52
SNX1-214ENST00000625244 SEC31BQ9NQW1 1179 aa18.3■□□□□ 0.52
SNX1-214ENST00000625244 SASH1O94885 1247 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms