RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NLRP10Q86W26 655 aa12.69□□□□□ -0.38
CUX1-221ENST00000622516 ZBTB38Q8NAP3 1195 aaPredicted RBP12.69□□□□□ -0.38
CUX1-221ENST00000622516 TEX13AQ9BXU3 409 aaPredicted RBP12.69□□□□□ -0.38
CUX1-221ENST00000622516 TRMT112Q9UI30 125 aaKnown RBP12.69□□□□□ -0.38
CUX1-221ENST00000622516 TJP1Q07157 1748 aa12.69□□□□□ -0.38
CUX1-221ENST00000622516 TOB2Q14106 344 aaPredicted RBP12.69□□□□□ -0.38
CUX1-221ENST00000622516 FERMT3Q86UX7 667 aa12.69□□□□□ -0.38
CUX1-221ENST00000622516 VSIG10Q8N0Z9 540 aa12.69□□□□□ -0.38
CUX1-221ENST00000622516 XAGE2Q96GT9 111 aa12.69□□□□□ -0.38
CUX1-221ENST00000622516 FIBPO43427 364 aa12.68□□□□□ -0.38
CUX1-221ENST00000622516 PCCAP05165 728 aaPredicted RBP12.68□□□□□ -0.38
CUX1-221ENST00000622516 ZSCAN22P10073 491 aaPredicted RBP12.68□□□□□ -0.38
CUX1-221ENST00000622516 RPS6KB1P23443 525 aa12.68□□□□□ -0.38
CUX1-221ENST00000622516 PSMA5P28066 241 aa12.68□□□□□ -0.38
CUX1-221ENST00000622516 FAM173BQ6P4H8 233 aa12.68□□□□□ -0.38
CUX1-221ENST00000622516 BCL9O00512 1426 aa12.68□□□□□ -0.38
CUX1-221ENST00000622516 ITGB4P16144 1822 aa12.68□□□□□ -0.38
CUX1-221ENST00000622516 ITGA6P23229 1130 aa12.68□□□□□ -0.38
CUX1-221ENST00000622516 KCNQ4P56696 695 aa12.68□□□□□ -0.38
CUX1-221ENST00000622516 LDHAL6AQ6ZMR3 332 aa12.68□□□□□ -0.38
CUX1-221ENST00000622516 CHST3Q7LGC8 479 aa12.68□□□□□ -0.38
CUX1-221ENST00000622516 DZIP3Q86Y13 1208 aaKnown RBP12.68□□□□□ -0.38
CUX1-221ENST00000622516 HELBQ8NG08 1087 aaPredicted RBP12.68□□□□□ -0.38
CUX1-221ENST00000622516 PAPPAQ13219 1627 aa12.67□□□□□ -0.38
CUX1-221ENST00000622516 SNAP23O00161 211 aa12.67□□□□□ -0.38
CUX1-221ENST00000622516 DDB1Q16531 1140 aa12.67□□□□□ -0.38
CUX1-221ENST00000622516 ROBO1Q9Y6N7 1651 aa12.67□□□□□ -0.38
CUX1-221ENST00000622516 IRS4O14654 1257 aaPredicted RBP12.67□□□□□ -0.38
CUX1-221ENST00000622516 TTC39AQ5SRH9 613 aa12.67□□□□□ -0.38
CUX1-221ENST00000622516 TTLL5Q6EMB2 1281 aa12.67□□□□□ -0.38
CUX1-221ENST00000622516 STOX1Q6ZVD7 989 aa12.67□□□□□ -0.38
CUX1-221ENST00000622516 TTLL11Q8NHH1 800 aa12.67□□□□□ -0.38
CUX1-221ENST00000622516 RBSNQ9H1K0 784 aa12.67□□□□□ -0.38
CUX1-221ENST00000622516 RRAGDQ9NQL2 400 aaPredicted RBP12.67□□□□□ -0.38
CUX1-221ENST00000622516 HCLS1P14317 486 aaPredicted RBP12.66□□□□□ -0.38
CUX1-221ENST00000622516 NASPP49321 788 aaPredicted RBP12.66□□□□□ -0.38
CUX1-221ENST00000622516 METTL24Q5JXM2 366 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 NEK1Q96PY6 1258 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 ATP6V1AP38606 617 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 DNM1Q05193 864 aaKnown RBP12.66□□□□□ -0.38
CUX1-221ENST00000622516 TRIM28Q13263 835 aaKnown RBP12.66□□□□□ -0.38
CUX1-221ENST00000622516 Q6ZUG5 572 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 RNF214Q8ND24 703 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 CNNM1Q9NRU3 951 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 UBN2Q6ZU65 1347 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 M0R2C6 588 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 KCNQ2O43526 872 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 CIAO1O76071 339 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 F13A1P00488 732 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 ZAP70P43403 619 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 WASHC4Q2M389 1173 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 CCDC158Q5M9N0 1113 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 LARP1BQ659C4 914 aaKnown RBP12.66□□□□□ -0.38
CUX1-221ENST00000622516 SMIM5Q71RC9 77 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 ZSCAN31Q96LW9 406 aaPredicted RBP12.66□□□□□ -0.38
CUX1-221ENST00000622516 SH2B1Q9NRF2 756 aaPredicted RBP12.66□□□□□ -0.38
CUX1-221ENST00000622516 MTMR6Q9Y217 621 aa12.66□□□□□ -0.38
CUX1-221ENST00000622516 DISP2A7MBM2 1401 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 JAK2O60674 1132 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 CSF1RP07333 972 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 HSP90B1P14625 803 aaKnown RBP12.65□□□□□ -0.38
CUX1-221ENST00000622516 USPL1Q5W0Q7 1092 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 MARCH10Q8NA82 808 aaPredicted RBP12.65□□□□□ -0.38
CUX1-221ENST00000622516 OSBP2Q969R2 916 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 ZMYND15Q9H091 742 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 NAP1L2Q9ULW6 460 aaPredicted RBP12.65□□□□□ -0.38
CUX1-221ENST00000622516 MAST3O60307 1309 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 HSPD1P10809 573 aaKnown RBP12.65□□□□□ -0.38
CUX1-221ENST00000622516 HAND2P61296 217 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 BRF1Q92994 677 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 DDX11Q96FC9 970 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 GPR108Q9NPR9 543 aa12.65□□□□□ -0.38
CUX1-221ENST00000622516 FOSBP53539 338 aa12.64□□□□□ -0.39
CUX1-221ENST00000622516 ZNF445P59923 1031 aa12.64□□□□□ -0.39
CUX1-221ENST00000622516 CDC37L1Q7L3B6 337 aa12.64□□□□□ -0.39
CUX1-221ENST00000622516 HMG20BQ9P0W2 317 aa12.64□□□□□ -0.39
CUX1-221ENST00000622516 RNF113AO15541 343 aaKnown RBP12.64□□□□□ -0.39
CUX1-221ENST00000622516 CTSWP56202 376 aa12.64□□□□□ -0.39
CUX1-221ENST00000622516 U3KPZ7 1027 aaPredicted RBP12.64□□□□□ -0.39
CUX1-221ENST00000622516 EP400Q96L91 3159 aa12.64□□□□□ -0.39
CUX1-221ENST00000622516 ATP2B3Q16720 1220 aa12.63□□□□□ -0.39
CUX1-221ENST00000622516 ZMYM1Q5SVZ6 1142 aa12.63□□□□□ -0.39
CUX1-221ENST00000622516 BCL11BQ9C0K0 894 aaPredicted RBP12.63□□□□□ -0.39
CUX1-221ENST00000622516 RIPOR2Q9Y4F9 1068 aa12.63□□□□□ -0.39
CUX1-221ENST00000622516 SPATA31A1Q5TZJ5 1347 aa12.63□□□□□ -0.39
CUX1-221ENST00000622516 ISY1Q9ULR0 285 aaKnown RBP12.63□□□□□ -0.39
CUX1-221ENST00000622516 A0A0U1RQG5 324 aaPredicted RBP12.63□□□□□ -0.39
CUX1-221ENST00000622516 ANKRD18BA2A2Z9 1011 aa12.63□□□□□ -0.39
CUX1-221ENST00000622516 CRKLP46109 303 aaKnown RBP12.63□□□□□ -0.39
CUX1-221ENST00000622516 ITPK1Q13572 414 aa12.63□□□□□ -0.39
CUX1-221ENST00000622516 GLIPR1L2Q4G1C9 344 aa12.63□□□□□ -0.39
CUX1-221ENST00000622516 INTS5Q6P9B9 1019 aaKnown RBP12.63□□□□□ -0.39
CUX1-221ENST00000622516 PUS7LQ9H0K6 701 aaKnown RBP12.63□□□□□ -0.39
CUX1-221ENST00000622516 AKAP2Q9Y2D5 859 aa12.63□□□□□ -0.39
CUX1-221ENST00000622516 JCADQ9P266 1359 aa12.63□□□□□ -0.39
CUX1-221ENST00000622516 SH3TC1Q8TE82 1336 aa12.62□□□□□ -0.39
CUX1-221ENST00000622516 MBD3O95983 291 aa12.62□□□□□ -0.39
CUX1-221ENST00000622516 MCAMP43121 646 aa12.62□□□□□ -0.39
CUX1-221ENST00000622516 CCT2P78371 535 aaKnown RBP12.62□□□□□ -0.39
CUX1-221ENST00000622516 TSGA10IPQ3SY00 556 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms