RNA–Protein interactions for RNA: ENST00000619655.4

MMP28-207, Transcript of matrix metallopeptidase 28, humanhuman

TSL 2

Gene MMP28, Length 2,336 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-207ENST00000619655 ZNF652Q9Y2D9 606 aa24.24■■□□□ 1.47
MMP28-207ENST00000619655 ZKSCAN1P17029 563 aaPredicted RBP24.23■■□□□ 1.47
MMP28-207ENST00000619655 ATP2B3Q16720 1220 aa24.23■■□□□ 1.47
MMP28-207ENST00000619655 CREB3L3Q68CJ9 461 aa24.23■■□□□ 1.47
MMP28-207ENST00000619655 BICDL1Q6ZP65 573 aa24.22■■□□□ 1.47
MMP28-207ENST00000619655 NTSR2O95665 410 aa24.21■■□□□ 1.47
MMP28-207ENST00000619655 PKP1Q13835 747 aa24.21■■□□□ 1.47
MMP28-207ENST00000619655 HELBQ8NG08 1087 aaPredicted RBP24.21■■□□□ 1.47
MMP28-207ENST00000619655 SEC31BQ9NQW1 1179 aa24.21■■□□□ 1.47
MMP28-207ENST00000619655 TAF5LO75529 589 aa24.21■■□□□ 1.47
MMP28-207ENST00000619655 CCNL1Q9UK58 526 aaPredicted RBP24.21■■□□□ 1.47
MMP28-207ENST00000619655 SLC27A2O14975 620 aa24.2■■□□□ 1.46
MMP28-207ENST00000619655 AK2P54819 239 aa24.2■■□□□ 1.46
MMP28-207ENST00000619655 MCMDC2Q4G0Z9 681 aa24.2■■□□□ 1.46
MMP28-207ENST00000619655 CWC22Q9HCG8 908 aaKnown RBP24.2■■□□□ 1.46
MMP28-207ENST00000619655 RFX7Q2KHR2 1363 aa24.2■■□□□ 1.46
MMP28-207ENST00000619655 SCARF1Q14162 830 aa24.19■■□□□ 1.46
MMP28-207ENST00000619655 PI16Q6UXB8 463 aa24.19■■□□□ 1.46
MMP28-207ENST00000619655 AK7Q96M32 723 aa24.19■■□□□ 1.46
MMP28-207ENST00000619655 NHSQ6T4R5 1651 aa24.19■■□□□ 1.46
MMP28-207ENST00000619655 CNTNAP4Q9C0A0 1308 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 GNPATO15228 680 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 SEPT12Q8IYM1 358 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 TTC14Q96N46 770 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 GBP4Q96PP9 640 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 MPHOSPH8Q99549 860 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 BCORQ6W2J9 1755 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 ZNF831Q5JPB2 1677 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 PDE8BO95263 885 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 GSE1Q14687 1217 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 RNF20Q5VTR2 975 aa24.18■■□□□ 1.46
MMP28-207ENST00000619655 TRPC5Q9UL62 973 aaPredicted RBP24.18■■□□□ 1.46
MMP28-207ENST00000619655 DDX60Q8IY21 1712 aaKnown RBP24.18■■□□□ 1.46
MMP28-207ENST00000619655 CCDC152Q4G0S7 254 aa24.17■■□□□ 1.46
MMP28-207ENST00000619655 VGLL2Q8N8G2 317 aa24.17■■□□□ 1.46
MMP28-207ENST00000619655 CYP46A1Q9Y6A2 500 aa24.17■■□□□ 1.46
MMP28-207ENST00000619655 TAF6LQ9Y6J9 622 aa24.17■■□□□ 1.46
MMP28-207ENST00000619655 PDRG1Q9NUG6 133 aa24.17■■□□□ 1.46
MMP28-207ENST00000619655 ZAP70P43403 619 aa24.16■■□□□ 1.46
MMP28-207ENST00000619655 NUCB2P80303 420 aa24.16■■□□□ 1.46
MMP28-207ENST00000619655 CLEC4GQ6UXB4 293 aa24.16■■□□□ 1.46
MMP28-207ENST00000619655 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.16■■□□□ 1.46
MMP28-207ENST00000619655 KCNB2Q92953 911 aa24.16■■□□□ 1.46
MMP28-207ENST00000619655 CUL4AQ13619 759 aa24.16■■□□□ 1.46
MMP28-207ENST00000619655 USPL1Q5W0Q7 1092 aa24.16■■□□□ 1.46
MMP28-207ENST00000619655 SRP68Q9UHB9 627 aaKnown RBP24.16■■□□□ 1.46
MMP28-207ENST00000619655 RUFY3Q7L099 469 aa24.15■■□□□ 1.46
MMP28-207ENST00000619655 ZSWIM6Q9HCJ5 1215 aa24.15■■□□□ 1.46
MMP28-207ENST00000619655 SPEF2Q9C093 1822 aa24.15■■□□□ 1.46
MMP28-207ENST00000619655 DDX11L8A8MPP1 907 aa24.15■■□□□ 1.46
MMP28-207ENST00000619655 COL9A3Q14050 684 aaPredicted RBP24.15■■□□□ 1.46
MMP28-207ENST00000619655 ERFEQ4G0M1 354 aa24.15■■□□□ 1.46
MMP28-207ENST00000619655 SNAP23O00161 211 aa24.14■■□□□ 1.45
MMP28-207ENST00000619655 RNF113AO15541 343 aaKnown RBP24.14■■□□□ 1.45
MMP28-207ENST00000619655 GTF2E1P29083 439 aaPredicted RBP24.14■■□□□ 1.45
MMP28-207ENST00000619655 FOXD4L5Q5VV16 416 aaPredicted RBP24.14■■□□□ 1.45
MMP28-207ENST00000619655 TBC1D9BQ66K14 1250 aa24.14■■□□□ 1.45
MMP28-207ENST00000619655 FOXD4L4Q8WXT5 416 aaPredicted RBP24.14■■□□□ 1.45
MMP28-207ENST00000619655 MROH5Q6ZUA9 1318 aa24.14■■□□□ 1.45
MMP28-207ENST00000619655 TM6SF1Q9BZW5 370 aa24.13■■□□□ 1.45
MMP28-207ENST00000619655 LIMCH1Q9UPQ0 1083 aa24.13■■□□□ 1.45
MMP28-207ENST00000619655 HSP90B1P14625 803 aaKnown RBP24.13■■□□□ 1.45
MMP28-207ENST00000619655 MCAMP43121 646 aa24.13■■□□□ 1.45
MMP28-207ENST00000619655 PUM3Q15397 648 aaKnown RBP24.13■■□□□ 1.45
MMP28-207ENST00000619655 VPS53Q5VIR6 699 aa24.13■■□□□ 1.45
MMP28-207ENST00000619655 TCEANC2Q96MN5 208 aa24.13■■□□□ 1.45
MMP28-207ENST00000619655 QTRT2Q9H974 415 aaKnown RBP24.13■■□□□ 1.45
MMP28-207ENST00000619655 HELLSQ9NRZ9 838 aa24.13■■□□□ 1.45
MMP28-207ENST00000619655 ATRNO75882 1429 aa24.13■■□□□ 1.45
MMP28-207ENST00000619655 RPS6KA4O75676 772 aa24.12■■□□□ 1.45
MMP28-207ENST00000619655 IGHMBP2P38935 993 aaKnown RBP24.12■■□□□ 1.45
MMP28-207ENST00000619655 ZMYM1Q5SVZ6 1142 aa24.12■■□□□ 1.45
MMP28-207ENST00000619655 AMIGO3Q86WK7 504 aa24.12■■□□□ 1.45
MMP28-207ENST00000619655 ZPR1O75312 459 aa24.12■■□□□ 1.45
MMP28-207ENST00000619655 PHF14O94880 888 aa24.12■■□□□ 1.45
MMP28-207ENST00000619655 PSMA5P28066 241 aa24.12■■□□□ 1.45
MMP28-207ENST00000619655 BCL2L12Q9HB09 334 aa24.12■■□□□ 1.45
MMP28-207ENST00000619655 RTCBQ9Y3I0 505 aaKnown RBP24.12■■□□□ 1.45
MMP28-207ENST00000619655 WASHC4Q2M389 1173 aa24.11■■□□□ 1.45
MMP28-207ENST00000619655 INTS4Q96HW7 963 aaKnown RBP24.11■■□□□ 1.45
MMP28-207ENST00000619655 LRP5O75197 1615 aa24.11■■□□□ 1.45
MMP28-207ENST00000619655 MAST3O60307 1309 aa24.11■■□□□ 1.45
MMP28-207ENST00000619655 SBF2Q86WG5 1849 aa24.11■■□□□ 1.45
MMP28-207ENST00000619655 RPAP1Q9BWH6 1393 aaPredicted RBP24.11■■□□□ 1.45
MMP28-207ENST00000619655 PHKA1P46020 1223 aa24.11■■□□□ 1.45
MMP28-207ENST00000619655 RC3H1Q5TC82 1133 aaKnown RBP24.11■■□□□ 1.45
MMP28-207ENST00000619655 HMG20BQ9P0W2 317 aa24.11■■□□□ 1.45
MMP28-207ENST00000619655 M0R2C6 588 aa24.1■■□□□ 1.45
MMP28-207ENST00000619655 TRAK2O60296 914 aa24.1■■□□□ 1.45
MMP28-207ENST00000619655 LARGE1O95461 756 aa24.1■■□□□ 1.45
MMP28-207ENST00000619655 CYP2E1P05181 493 aaPredicted RBP24.1■■□□□ 1.45
MMP28-207ENST00000619655 CCDC102BQ68D86 513 aa24.1■■□□□ 1.45
MMP28-207ENST00000619655 BLOC1S2Q6QNY1 142 aa24.1■■□□□ 1.45
MMP28-207ENST00000619655 C3orf67Q6ZVT6 689 aa24.1■■□□□ 1.45
MMP28-207ENST00000619655 LPIN2Q92539 896 aa24.1■■□□□ 1.45
MMP28-207ENST00000619655 NARFQ9UHQ1 456 aa24.1■■□□□ 1.45
MMP28-207ENST00000619655 U3KPZ7 1027 aaPredicted RBP24.1■■□□□ 1.45
MMP28-207ENST00000619655 LAMB2P55268 1798 aa24.1■■□□□ 1.45
MMP28-207ENST00000619655 IL27Q8NEV9 243 aa24.1■■□□□ 1.45
MMP28-207ENST00000619655 GZF1Q9H116 711 aaPredicted RBP24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms