RNA–Protein interactions for RNA: ENST00000618836.4

UBE2D3-233, Transcript of ubiquitin conjugating enzyme E2 D3, human

APPRIS ALT1 TSL 5 BASIC

Gene UBE2D3, Length 3,472 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-233	ENST00000618836	RPL17	P18621	184 aa	Known RBP	4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	SIM2	Q14190	667 aa	Predicted RBP	4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	SOGA3	Q5TF21	947 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	DUSP27	Q5VZP5	1158 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	UBE2Q1	Q7Z7E8	422 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	ERCC4	Q92889	916 aa	Predicted RBP	4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	BCL2L13	Q9BXK5	485 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	NUCKS1	Q9H1E3	243 aa	Known RBP	4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	KIAA1551	Q9HCM1	1747 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	TNR	Q92752	1358 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	ANKRD18B	A2A2Z9	1011 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	TRIM6-TRIM34	B2RNG4	842 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	GPR37L1	O60883	481 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	KIAA2012	Q0VF49	1180 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	WASHC5	Q12768	1159 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	PDXDC1	Q6P996	788 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	C8orf48	Q96LL4	319 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	TRIM34	Q9BYJ4	488 aa		4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836	CHCHD3	Q9NX63	227 aa	Known RBP	4.91	□□□□□ -1.62
UBE2D3-233	ENST00000618836		A6NJY4	79 aa		4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	TMEM88B	A6NKF7	163 aa		4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	PAK3	O75914	559 aa	Predicted RBP	4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	HSCB	Q8IWL3	235 aa		4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	FMNL2	Q96PY5	1086 aa		4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	RRAGD	Q9NQL2	400 aa	Predicted RBP	4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	DDX56	Q9NY93	547 aa	Known RBP	4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	FAM198A	Q9UFP1	575 aa		4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	ZNF232	Q9UNY5	417 aa		4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	THRAP3	Q9Y2W1	955 aa	Known RBP	4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	BOLA1	Q9Y3E2	137 aa		4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	HFM1	A2PYH4	1435 aa		4.9	□□□□□ -1.62
UBE2D3-233	ENST00000618836	POM121C	A8CG34	1229 aa		4.9	□□□□□ -1.63
UBE2D3-233	ENST00000618836	NAP1L1	P55209	391 aa	Known RBP	4.9	□□□□□ -1.63
UBE2D3-233	ENST00000618836	RC3H1	Q5TC82	1133 aa	Known RBP	4.9	□□□□□ -1.63
UBE2D3-233	ENST00000618836	STAG2	Q8N3U4	1231 aa		4.9	□□□□□ -1.63
UBE2D3-233	ENST00000618836	MNS1	Q8NEH6	495 aa		4.9	□□□□□ -1.63
UBE2D3-233	ENST00000618836	SMCR8	Q8TEV9	937 aa	Predicted RBP	4.9	□□□□□ -1.63
UBE2D3-233	ENST00000618836	SMARCC1	Q92922	1105 aa	Predicted RBP	4.9	□□□□□ -1.63
UBE2D3-233	ENST00000618836	NAP1L4	Q99733	375 aa	Known RBP	4.9	□□□□□ -1.63
UBE2D3-233	ENST00000618836	TRPC5	Q9UL62	973 aa	Predicted RBP	4.9	□□□□□ -1.63
UBE2D3-233	ENST00000618836	PCDHGA10	Q9Y5H3	936 aa		4.9	□□□□□ -1.63
UBE2D3-233	ENST00000618836	MIA2	Q96PC5	1412 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ATMIN	O43313	823 aa	Predicted RBP	4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	KIF5C	O60282	957 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ALDH1B1	P30837	517 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	TSPAN7	P41732	249 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	QPCT	Q16769	361 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ZNF394	Q53GI3	561 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	CCSAP	Q6IQ19	270 aa	Predicted RBP	4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	CC2D1A	Q6P1N0	951 aa	Predicted RBP	4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	MYO1H	Q8N1T3	1032 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	LZTS1	Q9Y250	596 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	PABPN1L	A6NDY0	278 aa	Known RBP	4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	TMEM110-MUSTN1	A8MSY1	372 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	TPM3	P06753	285 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	NBPF7	P0C2Y1	421 aa	Predicted RBP	4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	L1TD1	Q5T7N2	865 aa	Known RBP	4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	TMC2	Q8TDI7	906 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	GIPC2	Q8TF65	315 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	MMTAG2	Q9BU76	263 aa	Known RBP	4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	LIMD1	Q9UGP4	676 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	G3BP2	Q9UN86	482 aa	Known RBP	4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	SYNGAP1	Q96PV0	1343 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ARHGAP31	Q2M1Z3	1444 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	KIF1A	Q12756	1690 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	EVI5	O60447	810 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	CCDC15	Q0P6D6	951 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	VPS72	Q15906	364 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	CCDC93	Q567U6	631 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	KANK3	Q6NY19	840 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ANKLE2	Q86XL3	938 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ELOA2	Q8IYF1	753 aa	Predicted RBP	4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	TMUB1	Q9BVT8	246 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ISY1	Q9ULR0	285 aa	Known RBP	4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	PCDHGA4	Q9Y5G9	962 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	PIK3R4	Q99570	1358 aa		4.89	□□□□□ -1.63
UBE2D3-233	ENST00000618836	POTEI	P0CG38	1075 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	U2AF1L5	P0DN76	240 aa	Predicted RBP	4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	STIP1	P31948	543 aa	Known RBP	4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	MAP3K9	P80192	1104 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	U2AF1	Q01081	240 aa	Known RBP eCLIP	4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	MSL1	Q68DK7	614 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	CDHR1	Q96JP9	859 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	GINM1	Q9NU53	330 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	SLAIN2	Q9P270	581 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ZNF69	Q9UC07	566 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	TMCC3	Q9ULS5	477 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ZNF652	Q9Y2D9	606 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	KNSTRN	Q9Y448	316 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ATP10D	Q9P241	1426 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	SLC27A2	O14975	620 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	RBP3	P10745	1247 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ENPP1	P22413	925 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	TIE1	P35590	1138 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	BMS1	Q14692	1282 aa	Known RBP	4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	NUTM2G	Q5VZR2	741 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ZNF746	Q6NUN9	644 aa	Predicted RBP	4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	NDUFAF2	Q8N183	169 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	GAS2L2	Q8NHY3	880 aa		4.88	□□□□□ -1.63
UBE2D3-233	ENST00000618836	ADAMTS19	Q8TE59	1207 aa		4.88	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms