RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 LRRC4BQ9NT99 713 aa9.44□□□□□ -0.9
NEK3-207ENST00000617054 AK9Q5TCS8 1911 aa9.44□□□□□ -0.9
NEK3-207ENST00000617054 METTL24Q5JXM2 366 aa9.44□□□□□ -0.9
NEK3-207ENST00000617054 TBC1D9BQ66K14 1250 aa9.44□□□□□ -0.9
NEK3-207ENST00000617054 ZNF589Q86UQ0 364 aaPredicted RBP9.44□□□□□ -0.9
NEK3-207ENST00000617054 UTP14AQ9BVJ6 771 aaKnown RBP9.44□□□□□ -0.9
NEK3-207ENST00000617054 PDE8AO60658 829 aa9.44□□□□□ -0.9
NEK3-207ENST00000617054 SCARF1Q14162 830 aa9.44□□□□□ -0.9
NEK3-207ENST00000617054 LSG1Q9H089 658 aaKnown RBP9.44□□□□□ -0.9
NEK3-207ENST00000617054 ANKRD18BA2A2Z9 1011 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 ERFEQ4G0M1 354 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 GORABQ5T7V8 394 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 KIAA1211Q6ZU35 1233 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 XAGE2Q96GT9 111 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 SH3TC1Q8TE82 1336 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 K7ELQ4 463 aaPredicted RBP9.43□□□□□ -0.9
NEK3-207ENST00000617054 ATP5JP18859 108 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 BCL2L12Q9HB09 334 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 RIPOR2Q9Y4F9 1068 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 TAF6LQ9Y6J9 622 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 RABEP1Q15276 862 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 PRPF40BQ6NWY9 871 aaKnown RBP9.43□□□□□ -0.9
NEK3-207ENST00000617054 ARHGEF1Q92888 912 aaKnown RBP9.43□□□□□ -0.9
NEK3-207ENST00000617054 SNX21Q969T3 373 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 PLA2G12BQ9BX93 195 aa9.43□□□□□ -0.9
NEK3-207ENST00000617054 NTSR2O95665 410 aa9.42□□□□□ -0.9
NEK3-207ENST00000617054 GTF2E1P29083 439 aaPredicted RBP9.42□□□□□ -0.9
NEK3-207ENST00000617054 SLC51AQ86UW1 340 aa9.42□□□□□ -0.9
NEK3-207ENST00000617054 IFIT1P09914 478 aaKnown RBP9.42□□□□□ -0.9
NEK3-207ENST00000617054 ADCK5Q3MIX3 580 aa9.42□□□□□ -0.9
NEK3-207ENST00000617054 FAM196AQ6ZSG2 479 aa9.42□□□□□ -0.9
NEK3-207ENST00000617054 ZGPATQ8N5A5 531 aaKnown RBP9.42□□□□□ -0.9
NEK3-207ENST00000617054 CDHR2Q9BYE9 1310 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 KCNJ4P48050 445 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 ONECUT3O60422 494 aaPredicted RBP9.41□□□□□ -0.9
NEK3-207ENST00000617054 SAMD1Q6SPF0 538 aaPredicted RBP9.41□□□□□ -0.9
NEK3-207ENST00000617054 HAUS7Q99871 368 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 SNX14Q9Y5W7 946 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 ZPR1O75312 459 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 CIAO1O76071 339 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 MCCP23508 829 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 HSPA4P34932 840 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 TTC39AQ5SRH9 613 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 TCEANC2Q96MN5 208 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 PAG1Q9NWQ8 432 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 RTCBQ9Y3I0 505 aaKnown RBP9.41□□□□□ -0.9
NEK3-207ENST00000617054 BTAF1O14981 1849 aa9.41□□□□□ -0.9
NEK3-207ENST00000617054 RAD50Q92878 1312 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 ZAP70P43403 619 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 PKP1Q13835 747 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 ATP2B3Q16720 1220 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 MPHOSPH8Q99549 860 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 IQSEC3Q9UPP2 1182 aaPredicted RBP9.4□□□□□ -0.9
NEK3-207ENST00000617054 A0A0G2JLW4 131 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 ST18O60284 1047 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 RPS6KA4O75676 772 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 TAF1P21675 1872 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 VPS53Q5VIR6 699 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 FOXD4L5Q5VV16 416 aaPredicted RBP9.4□□□□□ -0.9
NEK3-207ENST00000617054 KRT27Q7Z3Y8 459 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 RUFY2Q8WXA3 655 aa9.4□□□□□ -0.9
NEK3-207ENST00000617054 FOXD4L4Q8WXT5 416 aaPredicted RBP9.4□□□□□ -0.9
NEK3-207ENST00000617054 ATRNO75882 1429 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 NPHP1O15259 732 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 CCDC158Q5M9N0 1113 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 ZNF652Q9Y2D9 606 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 RBM8AQ9Y5S9 174 aaKnown RBP9.39□□□□□ -0.91
NEK3-207ENST00000617054 COL4A1P02462 1669 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 ZNF609O15014 1411 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 PDE8BO95263 885 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 CASTP20810 708 aaKnown RBP9.39□□□□□ -0.91
NEK3-207ENST00000617054 RFC4P35249 363 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.39□□□□□ -0.91
NEK3-207ENST00000617054 SETDB2Q96T68 719 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 CCDC171Q6TFL3 1326 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 MCAMP43121 646 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 PHKA1P46020 1223 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 PARP10Q53GL7 1025 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 VGLL2Q8N8G2 317 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 CHAMP1Q96JM3 812 aa9.39□□□□□ -0.91
NEK3-207ENST00000617054 RIC1Q4ADV7 1423 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 NBPF5PQ86XG9 351 aaPredicted RBP9.38□□□□□ -0.91
NEK3-207ENST00000617054 KBTBD3Q8NAB2 608 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 TMX3Q96JJ7 454 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 AK7Q96M32 723 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 BCL11BQ9C0K0 894 aaPredicted RBP9.38□□□□□ -0.91
NEK3-207ENST00000617054 AKAP2Q9Y2D5 859 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 THSD7AQ9UPZ6 1657 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 CCDC152Q4G0S7 254 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 TRAPPC3LQ5T215 181 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 CELF1Q92879 486 aaKnown RBP9.38□□□□□ -0.91
NEK3-207ENST00000617054 JAKMIP1Q96N16 626 aaKnown RBP9.38□□□□□ -0.91
NEK3-207ENST00000617054 GPR108Q9NPR9 543 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 NARFQ9UHQ1 456 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 CNTNAP4Q9C0A0 1308 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 ANKRD36CQ5JPF3 1778 aa9.38□□□□□ -0.91
NEK3-207ENST00000617054 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.37□□□□□ -0.91
NEK3-207ENST00000617054 BCAMP50895 628 aa9.37□□□□□ -0.91
NEK3-207ENST00000617054 NECTIN1Q15223 517 aa9.37□□□□□ -0.91
NEK3-207ENST00000617054 CREB3L3Q68CJ9 461 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms