RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 HMGB1P09429 215 aaKnown RBP14.66□□□□□ -0.06
LIG1-221ENST00000613670 TATP17735 454 aaPredicted RBP14.66□□□□□ -0.06
LIG1-221ENST00000613670 CPS1P31327 1500 aa14.66□□□□□ -0.06
LIG1-221ENST00000613670 CRB1P82279 1406 aa14.66□□□□□ -0.06
LIG1-221ENST00000613670 TIMM10P62072 90 aa14.66□□□□□ -0.06
LIG1-221ENST00000613670 CCDC158Q5M9N0 1113 aa14.66□□□□□ -0.06
LIG1-221ENST00000613670 ZSWIM4Q9H7M6 989 aa14.66□□□□□ -0.06
LIG1-221ENST00000613670 KCNA6P17658 529 aa14.66□□□□□ -0.06
LIG1-221ENST00000613670 KCNH5Q8NCM2 988 aa14.66□□□□□ -0.06
LIG1-221ENST00000613670 ANKRD24Q8TF21 1146 aa14.66□□□□□ -0.06
LIG1-221ENST00000613670 GTF3C6Q969F1 213 aa14.66□□□□□ -0.06
LIG1-221ENST00000613670 USP28Q96RU2 1077 aa14.65□□□□□ -0.06
LIG1-221ENST00000613670 MROH1Q8NDA8 1641 aa14.65□□□□□ -0.06
LIG1-221ENST00000613670 KIF2AO00139 706 aaPredicted RBP14.65□□□□□ -0.06
LIG1-221ENST00000613670 GTF2F1P35269 517 aaKnown RBP eCLIP14.65□□□□□ -0.062e-10■■■■■ 37.3
LIG1-221ENST00000613670 CABP4P57796 275 aa14.65□□□□□ -0.06
LIG1-221ENST00000613670 IMMTQ16891 758 aaKnown RBP14.65□□□□□ -0.06
LIG1-221ENST00000613670 C11orf57Q6ZUT1 292 aaPredicted RBP14.65□□□□□ -0.06
LIG1-221ENST00000613670 DHX32Q7L7V1 743 aaKnown RBP14.65□□□□□ -0.06
LIG1-221ENST00000613670 ZNF397Q8NF99 534 aaPredicted RBP14.65□□□□□ -0.06
LIG1-221ENST00000613670 SPTLC3Q9NUV7 552 aa14.65□□□□□ -0.06
LIG1-221ENST00000613670 KLF18A0A0U1RQI7 1052 aa14.65□□□□□ -0.06
LIG1-221ENST00000613670 RNMTO43148 476 aaKnown RBP14.65□□□□□ -0.06
LIG1-221ENST00000613670 ZBTB3Q9H5J0 574 aa14.65□□□□□ -0.06
LIG1-221ENST00000613670 GPS2Q13227 327 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 SAFBQ15424 915 aaKnown RBP eCLIP14.64□□□□□ -0.07
LIG1-221ENST00000613670 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.64□□□□□ -0.07
LIG1-221ENST00000613670 RASSF8Q8NHQ8 419 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 CCDC34Q96HJ3 373 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 ARHGAP31Q2M1Z3 1444 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 TOP1P11387 765 aaKnown RBP14.64□□□□□ -0.07
LIG1-221ENST00000613670 SKIDA1Q1XH10 827 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 NFATC2IPQ8NCF5 419 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 USP6P35125 1406 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 SASH1O94885 1247 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 TRHP20396 242 aaPredicted RBP14.64□□□□□ -0.07
LIG1-221ENST00000613670 FAM160A1Q05DH4 1040 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 JMYQ8N9B5 988 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 TAF6LQ9Y6J9 622 aa14.64□□□□□ -0.07
LIG1-221ENST00000613670 LRRC8AQ8IWT6 810 aa14.63□□□□□ -0.07
LIG1-221ENST00000613670 ABCA9Q8IUA7 1624 aa14.63□□□□□ -0.07
LIG1-221ENST00000613670 SALL3Q9BXA9 1300 aa14.63□□□□□ -0.07
LIG1-221ENST00000613670 CCDC57Q2TAC2 916 aa14.63□□□□□ -0.07
LIG1-221ENST00000613670 ARHGAP29Q52LW3 1261 aa14.63□□□□□ -0.07
LIG1-221ENST00000613670 DDX21Q9NR30 783 aaKnown RBP eCLIP14.63□□□□□ -0.07
LIG1-221ENST00000613670 HOOK1Q9UJC3 728 aaKnown RBP14.63□□□□□ -0.07
LIG1-221ENST00000613670 PPLO60437 1756 aa14.63□□□□□ -0.07
LIG1-221ENST00000613670 IDH1O75874 414 aaKnown RBP14.63□□□□□ -0.07
LIG1-221ENST00000613670 KIF20AO95235 890 aa14.63□□□□□ -0.07
LIG1-221ENST00000613670 AKAP17AQ02040 695 aaKnown RBP14.63□□□□□ -0.07
LIG1-221ENST00000613670 NCBP1Q09161 790 aaKnown RBP14.63□□□□□ -0.07
LIG1-221ENST00000613670 IP6K1Q92551 441 aa14.63□□□□□ -0.07
LIG1-221ENST00000613670 PGBD1Q96JS3 809 aa14.63□□□□□ -0.07
LIG1-221ENST00000613670 NOL10Q9BSC4 688 aaKnown RBP14.63□□□□□ -0.07
LIG1-221ENST00000613670 CTNNA3Q9UI47 895 aa14.63□□□□□ -0.07
LIG1-221ENST00000613670 TAF5LO75529 589 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 RXRAP19793 462 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 CCDC144BQ3MJ40 725 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 TNNI3KQ59H18 835 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 FPGT-TNNI3KV9GXZ4 949 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 MAP2P11137 1827 aaKnown RBP14.62□□□□□ -0.07
LIG1-221ENST00000613670 GIGYF1O75420 1035 aaPredicted RBP14.62□□□□□ -0.07
LIG1-221ENST00000613670 UBASH3AP57075 661 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 TDRD7Q8NHU6 1098 aaKnown RBP14.62□□□□□ -0.07
LIG1-221ENST00000613670 CPLX3Q8WVH0 158 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 BABAM1Q9NWV8 329 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 SPTLC2O15270 562 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 CCP110O43303 1012 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 MICU3Q86XE3 530 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 NEO1Q92859 1461 aa14.62□□□□□ -0.07
LIG1-221ENST00000613670 ARHGEF28Q8N1W1 1705 aaKnown RBP14.61□□□□□ -0.07
LIG1-221ENST00000613670 BMS1Q14692 1282 aaKnown RBP14.61□□□□□ -0.07
LIG1-221ENST00000613670 SLFNL1Q499Z3 407 aa14.61□□□□□ -0.07
LIG1-221ENST00000613670 KLHL10Q6JEL2 608 aa14.61□□□□□ -0.07
LIG1-221ENST00000613670 PAG1Q9NWQ8 432 aa14.61□□□□□ -0.07
LIG1-221ENST00000613670 USP32Q8NFA0 1604 aa14.61□□□□□ -0.07
LIG1-221ENST00000613670 CHGBP05060 677 aa14.61□□□□□ -0.07
LIG1-221ENST00000613670 SCRN1Q12765 414 aa14.61□□□□□ -0.07
LIG1-221ENST00000613670 ERCC6LQ2NKX8 1250 aa14.61□□□□□ -0.07
LIG1-221ENST00000613670 CBFA2T2O43439 604 aa14.61□□□□□ -0.07
LIG1-221ENST00000613670 GNG11P61952 73 aa14.61□□□□□ -0.07
LIG1-221ENST00000613670 ELP1O95163 1332 aa14.61□□□□□ -0.07
LIG1-221ENST00000613670 CYP21A2P08686 494 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 PTPN21Q16825 1174 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 REREQ9P2R6 1566 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 ZNF213O14771 459 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 TPM1P09493 284 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 HOXB7P09629 217 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 SYKP43405 635 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 TOB2Q14106 344 aaPredicted RBP14.6□□□□□ -0.07
LIG1-221ENST00000613670 CCDC150Q8NCX0 1101 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 CNNM3Q8NE01 707 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 ERO1AQ96HE7 468 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 XPO4Q9C0E2 1151 aaKnown RBP14.6□□□□□ -0.07
LIG1-221ENST00000613670 USP27XA6NNY8 438 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 GOLGA6L1Q8N7Z2 621 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 SIRT1Q96EB6 747 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 ZFP91Q96JP5 570 aaPredicted RBP14.6□□□□□ -0.07
LIG1-221ENST00000613670 PIK3C2BO00750 1634 aa14.6□□□□□ -0.07
LIG1-221ENST00000613670 ZSCAN20P17040 1043 aaPredicted RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms