RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 SLC4A4Q9Y6R1 1079 aa15.88■□□□□ 0.13
GGA3-220ENST00000613421 LDHCP07864 332 aa15.88■□□□□ 0.13
GGA3-220ENST00000613421 KIF4BQ2VIQ3 1234 aa15.88■□□□□ 0.13
GGA3-220ENST00000613421 APOBRQ0VD83 1088 aa15.88■□□□□ 0.13
GGA3-220ENST00000613421 SPA17Q15506 151 aa15.88■□□□□ 0.13
GGA3-220ENST00000613421 SIRT1Q96EB6 747 aa15.88■□□□□ 0.13
GGA3-220ENST00000613421 NUP88Q99567 741 aaPredicted RBP15.88■□□□□ 0.13
GGA3-220ENST00000613421 PYM1Q9BRP8 204 aaKnown RBP15.88■□□□□ 0.13
GGA3-220ENST00000613421 DNAJC25Q9H1X3 360 aa15.88■□□□□ 0.13
GGA3-220ENST00000613421 TMOD2Q9NZR1 351 aa15.88■□□□□ 0.13
GGA3-220ENST00000613421 CGNQ9P2M7 1197 aaKnown RBP15.88■□□□□ 0.13
GGA3-220ENST00000613421 TMEM2Q9UHN6 1383 aa15.88■□□□□ 0.13
GGA3-220ENST00000613421 GOLGA6L10A6NI86 522 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 CYP7A1P22680 504 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 TYRO3Q06418 890 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 AEBP2Q6ZN18 517 aaPredicted RBP15.87■□□□□ 0.13
GGA3-220ENST00000613421 PRM3Q9NNZ6 103 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 RTN1Q16799 776 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 SPTY2D1Q68D10 685 aaPredicted RBP15.87■□□□□ 0.13
GGA3-220ENST00000613421 TSG101Q99816 390 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 CRNKL1Q9BZJ0 848 aaKnown RBP15.87■□□□□ 0.13
GGA3-220ENST00000613421 ZFYVE16Q7Z3T8 1539 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 RDXP35241 583 aaKnown RBP15.87■□□□□ 0.13
GGA3-220ENST00000613421 SNW1Q13573 536 aaKnown RBP15.87■□□□□ 0.13
GGA3-220ENST00000613421 ESR2Q92731 530 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 PTPDC1A2A3K4 754 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 DYNC1I1O14576 645 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 SGSM2O43147 1006 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 BAG3O95817 575 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 NOLC1Q14978 699 aaKnown RBP eCLIP15.87■□□□□ 0.135e-6■□□□□ 9.2
GGA3-220ENST00000613421 TMEM132AQ24JP5 1023 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 HS1BP3Q53T59 392 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 CCDC12Q8WUD4 166 aaPredicted RBP15.87■□□□□ 0.13
GGA3-220ENST00000613421 METTL22Q9BUU2 404 aaPredicted RBP15.87■□□□□ 0.13
GGA3-220ENST00000613421 GBP3Q9H0R5 595 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 PDCL3Q9H2J4 239 aa15.87■□□□□ 0.13
GGA3-220ENST00000613421 ANKRD18AQ8IVF6 992 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 PCDH11XQ9BZA7 1347 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 PCDH11YQ9BZA8 1340 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 H0YHG0 523 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 CCDC96Q2M329 555 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 CCDC186Q7Z3E2 898 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 SNX14Q9Y5W7 946 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 CHST3Q7LGC8 479 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 NGLY1Q96IV0 654 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 YEATS4O95619 227 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 NBPF7P0C2Y1 421 aaPredicted RBP15.86■□□□□ 0.13
GGA3-220ENST00000613421 CCDC102AQ96A19 550 aa15.86■□□□□ 0.13
GGA3-220ENST00000613421 TCP11L1Q9NUJ3 509 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 SHROOM2Q13796 1616 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 FAM135BQ49AJ0 1406 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 FGFR1OPO95684 399 aaKnown RBP15.85■□□□□ 0.13
GGA3-220ENST00000613421 CEP135Q66GS9 1140 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 TAF4BQ92750 862 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 SEPT11Q9NVA2 429 aaKnown RBP15.85■□□□□ 0.13
GGA3-220ENST00000613421 PLA2R1Q13018 1463 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 GOLGA6L9A6NEM1 432 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 SPTLC2O15270 562 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 ATP6V1AP38606 617 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 HELLSQ9NRZ9 838 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 IQSEC3Q9UPP2 1182 aaPredicted RBP15.85■□□□□ 0.13
GGA3-220ENST00000613421 YEATS2Q9ULM3 1422 aa15.85■□□□□ 0.13
GGA3-220ENST00000613421 TNNI3KQ59H18 835 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 FPGT-TNNI3KV9GXZ4 949 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 RTL1A6NKG5 1358 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 KIF1BO60333 1816 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 BMP15O95972 392 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 RPS6KB1P23443 525 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 MARCKSP29966 332 aaPredicted RBP15.84■□□□□ 0.13
GGA3-220ENST00000613421 UBA7P41226 1012 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 CBX1P83916 185 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 CACNA2D4Q7Z3S7 1137 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 DZIP3Q86Y13 1208 aaKnown RBP15.84■□□□□ 0.13
GGA3-220ENST00000613421 AOPEPQ8N6M6 819 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 PLBD2Q8NHP8 589 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 PAXBP1Q9Y5B6 917 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 FAM193AP78312 1265 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 IFIT1BQ5T764 474 aaKnown RBP15.84■□□□□ 0.13
GGA3-220ENST00000613421 CLASP1Q7Z460 1538 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 SLC27A2O14975 620 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 NBPF6Q5VWK0 638 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 NBPF5PQ86XG9 351 aaPredicted RBP15.84■□□□□ 0.13
GGA3-220ENST00000613421 NBPF4Q96M43 638 aa15.84■□□□□ 0.13
GGA3-220ENST00000613421 TTC12Q9H892 705 aaPredicted RBP15.84■□□□□ 0.13
GGA3-220ENST00000613421 IRS4O14654 1257 aaPredicted RBP15.83■□□□□ 0.13
GGA3-220ENST00000613421 PPP1R12BO60237 982 aaPredicted RBP15.83■□□□□ 0.13
GGA3-220ENST00000613421 GSPT1P15170 499 aaKnown RBP15.83■□□□□ 0.13
GGA3-220ENST00000613421 UBASH3AP57075 661 aa15.83■□□□□ 0.13
GGA3-220ENST00000613421 UTP14AQ9BVJ6 771 aaKnown RBP15.83■□□□□ 0.13
GGA3-220ENST00000613421 C6orf229H3BNL8 230 aa15.83■□□□□ 0.13
GGA3-220ENST00000613421 EIF4A1P60842 406 aaKnown RBP15.83■□□□□ 0.13
GGA3-220ENST00000613421 NIP7Q9Y221 180 aaKnown RBP eCLIP15.83■□□□□ 0.12
GGA3-220ENST00000613421 SKILP12757 684 aa15.83■□□□□ 0.12
GGA3-220ENST00000613421 KLHDC4Q8TBB5 520 aa15.83■□□□□ 0.12
GGA3-220ENST00000613421 CALML4Q96GE6 196 aa15.83■□□□□ 0.12
GGA3-220ENST00000613421 AMPD3Q01432 767 aa15.82■□□□□ 0.12
GGA3-220ENST00000613421 SUCLG2Q96I99 432 aa15.82■□□□□ 0.12
GGA3-220ENST00000613421 ORAI2Q96SN7 254 aa15.82■□□□□ 0.12
GGA3-220ENST00000613421 SLC4A8Q2Y0W8 1093 aa15.82■□□□□ 0.12
GGA3-220ENST00000613421 EYA2O00167 538 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms