RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 MRVI1Q9Y6F6 885 aa23.94■■□□□ 1.42
SHKBP1-225ENST00000600733 ABCC6O95255 1503 aa23.93■■□□□ 1.42
SHKBP1-225ENST00000600733 GOLIM4O00461 696 aa23.93■■□□□ 1.42
SHKBP1-225ENST00000600733 TYRO3Q06418 890 aa23.93■■□□□ 1.42
SHKBP1-225ENST00000600733 TTLL7Q6ZT98 887 aa23.93■■□□□ 1.42
SHKBP1-225ENST00000600733 ATG9AQ7Z3C6 839 aa23.93■■□□□ 1.42
SHKBP1-225ENST00000600733 TNMDQ9H2S6 317 aa23.93■■□□□ 1.42
SHKBP1-225ENST00000600733 TIMM10P62072 90 aa23.93■■□□□ 1.42
SHKBP1-225ENST00000600733 PDCL3Q9H2J4 239 aa23.93■■□□□ 1.42
SHKBP1-225ENST00000600733 TMEM94Q12767 1356 aa23.92■■□□□ 1.42
SHKBP1-225ENST00000600733 SCRN1Q12765 414 aa23.92■■□□□ 1.42
SHKBP1-225ENST00000600733 SPC24Q8NBT2 197 aa23.92■■□□□ 1.42
SHKBP1-225ENST00000600733 FAM200AQ8TCP9 573 aa23.92■■□□□ 1.42
SHKBP1-225ENST00000600733 LAMB4A4D0S4 1761 aa23.92■■□□□ 1.42
SHKBP1-225ENST00000600733 H7C1W4 665 aa23.91■■□□□ 1.42
SHKBP1-225ENST00000600733 PGBD1Q96JS3 809 aa23.91■■□□□ 1.42
SHKBP1-225ENST00000600733 SH3TC1Q8TE82 1336 aa23.91■■□□□ 1.42
SHKBP1-225ENST00000600733 FGD1P98174 961 aa23.91■■□□□ 1.42
SHKBP1-225ENST00000600733 RESTQ13127 1097 aa23.91■■□□□ 1.42
SHKBP1-225ENST00000600733 LUZP1Q86V48 1076 aa23.91■■□□□ 1.42
SHKBP1-225ENST00000600733 LAMA4Q16363 1823 aa23.9■■□□□ 1.42
SHKBP1-225ENST00000600733 NR1I2O75469 434 aa23.9■■□□□ 1.42
SHKBP1-225ENST00000600733 PAG1Q9NWQ8 432 aa23.9■■□□□ 1.42
SHKBP1-225ENST00000600733 H3BQV1 296 aa23.9■■□□□ 1.42
SHKBP1-225ENST00000600733 IFFO2Q5TF58 517 aa23.9■■□□□ 1.42
SHKBP1-225ENST00000600733 A0A0G2JLW4 131 aa23.89■■□□□ 1.42
SHKBP1-225ENST00000600733 KCNF1Q9H3M0 494 aa23.89■■□□□ 1.42
SHKBP1-225ENST00000600733 TNS3Q68CZ2 1445 aa23.89■■□□□ 1.41
SHKBP1-225ENST00000600733 ANO6Q4KMQ2 910 aa23.89■■□□□ 1.41
SHKBP1-225ENST00000600733 BICD2Q8TD16 824 aa23.89■■□□□ 1.41
SHKBP1-225ENST00000600733 ZNF594Q96JF6 807 aaPredicted RBP23.89■■□□□ 1.41
SHKBP1-225ENST00000600733 DDX19AQ9NUU7 478 aaKnown RBP23.89■■□□□ 1.41
SHKBP1-225ENST00000600733 CWC25Q9NXE8 425 aaPredicted RBP23.89■■□□□ 1.41
SHKBP1-225ENST00000600733 PALLDQ8WX93 1383 aa23.88■■□□□ 1.41
SHKBP1-225ENST00000600733 DYNC1I1O14576 645 aa23.88■■□□□ 1.41
SHKBP1-225ENST00000600733 A1BGP04217 495 aa23.88■■□□□ 1.41
SHKBP1-225ENST00000600733 LRRC24Q50LG9 513 aa23.88■■□□□ 1.41
SHKBP1-225ENST00000600733 FOSBP53539 338 aa23.87■■□□□ 1.41
SHKBP1-225ENST00000600733 GLIPR1L2Q4G1C9 344 aa23.87■■□□□ 1.41
SHKBP1-225ENST00000600733 CLSTN2Q9H4D0 955 aa23.87■■□□□ 1.41
SHKBP1-225ENST00000600733 ZBTB3Q9H5J0 574 aa23.87■■□□□ 1.41
SHKBP1-225ENST00000600733 APOBRQ0VD83 1088 aa23.86■■□□□ 1.41
SHKBP1-225ENST00000600733 DHX32Q7L7V1 743 aaKnown RBP23.86■■□□□ 1.41
SHKBP1-225ENST00000600733 CBX8Q9HC52 389 aa23.86■■□□□ 1.41
SHKBP1-225ENST00000600733 SPTLC3Q9NUV7 552 aa23.86■■□□□ 1.41
SHKBP1-225ENST00000600733 CEBPZQ03701 1054 aaKnown RBP23.86■■□□□ 1.41
SHKBP1-225ENST00000600733 RBM43Q6ZSC3 357 aaKnown RBP23.86■■□□□ 1.41
SHKBP1-225ENST00000600733 SMARCC2Q8TAQ2 1214 aa23.86■■□□□ 1.41
SHKBP1-225ENST00000600733 HELLSQ9NRZ9 838 aa23.86■■□□□ 1.41
SHKBP1-225ENST00000600733 PYCARDQ9ULZ3 195 aa23.86■■□□□ 1.41
SHKBP1-225ENST00000600733 TJP1Q07157 1748 aa23.86■■□□□ 1.41
SHKBP1-225ENST00000600733 PLEKHG2Q9H7P9 1386 aa23.85■■□□□ 1.41
SHKBP1-225ENST00000600733 PFKFB2O60825 505 aa23.85■■□□□ 1.41
SHKBP1-225ENST00000600733 NSUN7Q8NE18 718 aaKnown RBP23.85■■□□□ 1.41
SHKBP1-225ENST00000600733 NUP188Q5SRE5 1749 aa23.85■■□□□ 1.41
SHKBP1-225ENST00000600733 PPFIA3O75145 1194 aa23.85■■□□□ 1.41
SHKBP1-225ENST00000600733 CTDNEP1O95476 244 aa23.85■■□□□ 1.41
SHKBP1-225ENST00000600733 IL15P40933 162 aaPredicted RBP23.85■■□□□ 1.41
SHKBP1-225ENST00000600733 ZMYM1Q5SVZ6 1142 aa23.85■■□□□ 1.41
SHKBP1-225ENST00000600733 DSCC1Q9BVC3 393 aa23.85■■□□□ 1.41
SHKBP1-225ENST00000600733 HMGB1P09429 215 aaKnown RBP23.84■■□□□ 1.41
SHKBP1-225ENST00000600733 ZSCAN16Q9H4T2 348 aaPredicted RBP23.84■■□□□ 1.41
SHKBP1-225ENST00000600733 PARP4Q9UKK3 1724 aaKnown RBP23.84■■□□□ 1.41
SHKBP1-225ENST00000600733 SPATA31A3Q5VYP0 1347 aa23.84■■□□□ 1.41
SHKBP1-225ENST00000600733 HSPD1P10809 573 aaKnown RBP23.84■■□□□ 1.41
SHKBP1-225ENST00000600733 CCT2P78371 535 aaKnown RBP23.84■■□□□ 1.41
SHKBP1-225ENST00000600733 FTOQ9C0B1 505 aaKnown RBP eCLIP23.84■■□□□ 1.41
SHKBP1-225ENST00000600733 GPR108Q9NPR9 543 aa23.84■■□□□ 1.41
SHKBP1-225ENST00000600733 STRCP1A6NGW2 1772 aa23.83■■□□□ 1.41
SHKBP1-225ENST00000600733 EYA2O00167 538 aa23.83■■□□□ 1.41
SHKBP1-225ENST00000600733 CHST3Q7LGC8 479 aa23.83■■□□□ 1.41
SHKBP1-225ENST00000600733 MYRIPQ8NFW9 859 aa23.83■■□□□ 1.41
SHKBP1-225ENST00000600733 KIAA1524Q8TCG1 905 aa23.83■■□□□ 1.41
SHKBP1-225ENST00000600733 LLPHQ9BRT6 129 aaKnown RBP23.83■■□□□ 1.41
SHKBP1-225ENST00000600733 PUS3Q9BZE2 481 aaKnown RBP23.83■■□□□ 1.41
SHKBP1-225ENST00000600733 NCOA5Q9HCD5 579 aaKnown RBP23.83■■□□□ 1.41
SHKBP1-225ENST00000600733 MAST3O60307 1309 aa23.83■■□□□ 1.4
SHKBP1-225ENST00000600733 A0A1B0GUL7 405 aa23.82■■□□□ 1.4
SHKBP1-225ENST00000600733 PTPDC1A2A3K4 754 aa23.82■■□□□ 1.4
SHKBP1-225ENST00000600733 IFIT1P09914 478 aaKnown RBP23.82■■□□□ 1.4
SHKBP1-225ENST00000600733 EXOSC10Q01780 885 aaKnown RBP23.82■■□□□ 1.4
SHKBP1-225ENST00000600733 E7EWF7 191 aa23.82■■□□□ 1.4
SHKBP1-225ENST00000600733 ADD1P35611 737 aaKnown RBP23.82■■□□□ 1.4
SHKBP1-225ENST00000600733 CFAP45Q9UL16 551 aa23.82■■□□□ 1.4
SHKBP1-225ENST00000600733 NAP1L2Q9ULW6 460 aaPredicted RBP23.82■■□□□ 1.4
SHKBP1-225ENST00000600733 CPDO75976 1380 aa23.82■■□□□ 1.4
SHKBP1-225ENST00000600733 ZCRB1Q8TBF4 217 aaKnown RBP23.81■■□□□ 1.4
SHKBP1-225ENST00000600733 DNAJC25Q9H1X3 360 aa23.81■■□□□ 1.4
SHKBP1-225ENST00000600733 GOLGA6L6A8MZA4 724 aa23.81■■□□□ 1.4
SHKBP1-225ENST00000600733 PTGS1P23219 599 aa23.81■■□□□ 1.4
SHKBP1-225ENST00000600733 CCDC191Q8NCU4 936 aa23.81■■□□□ 1.4
SHKBP1-225ENST00000600733 PCDH11XQ9BZA7 1347 aa23.8■■□□□ 1.4
SHKBP1-225ENST00000600733 PCDH11YQ9BZA8 1340 aa23.8■■□□□ 1.4
SHKBP1-225ENST00000600733 AGXT2Q9BYV1 514 aa23.8■■□□□ 1.4
SHKBP1-225ENST00000600733 DCCP43146 1447 aa23.8■■□□□ 1.4
SHKBP1-225ENST00000600733 M0R2C6 588 aa23.8■■□□□ 1.4
SHKBP1-225ENST00000600733 RNF113AO15541 343 aaKnown RBP23.8■■□□□ 1.4
SHKBP1-225ENST00000600733 TPM3P06753 285 aa23.8■■□□□ 1.4
SHKBP1-225ENST00000600733 TTLL5Q6EMB2 1281 aa23.8■■□□□ 1.4
SHKBP1-225ENST00000600733 TOM1L2Q6ZVM7 507 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms