RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 CTCFP49711 727 aaPredicted RBP14.65□□□□□ -0.06
HIF3A-217ENST00000600236 CDC37L1Q7L3B6 337 aa14.65□□□□□ -0.06
HIF3A-217ENST00000600236 TRAF5O00463 557 aa14.64□□□□□ -0.07
HIF3A-217ENST00000600236 CELF2O95319 508 aaKnown RBP14.64□□□□□ -0.07
HIF3A-217ENST00000600236 SLC4A2P04920 1241 aa14.64□□□□□ -0.07
HIF3A-217ENST00000600236 CTSWP56202 376 aa14.64□□□□□ -0.07
HIF3A-217ENST00000600236 DOK7Q18PE1 504 aa14.64□□□□□ -0.07
HIF3A-217ENST00000600236 CCDC85AQ96PX6 553 aaPredicted RBP14.64□□□□□ -0.07
HIF3A-217ENST00000600236 PGAP2Q9UHJ9 254 aa14.64□□□□□ -0.07
HIF3A-217ENST00000600236 ZBTB12Q9Y330 459 aaPredicted RBP14.64□□□□□ -0.07
HIF3A-217ENST00000600236 TLL2Q9Y6L7 1015 aa14.64□□□□□ -0.07
HIF3A-217ENST00000600236 XDHP47989 1333 aa14.64□□□□□ -0.07
HIF3A-217ENST00000600236 FOXN1O15353 648 aa14.63□□□□□ -0.07
HIF3A-217ENST00000600236 ATP2B4P23634 1241 aa14.63□□□□□ -0.07
HIF3A-217ENST00000600236 WDR63Q8IWG1 891 aa14.63□□□□□ -0.07
HIF3A-217ENST00000600236 TRPM4Q8TD43 1214 aa14.63□□□□□ -0.07
HIF3A-217ENST00000600236 JARID2Q92833 1246 aaPredicted RBP14.63□□□□□ -0.07
HIF3A-217ENST00000600236 CAPNS2Q96L46 248 aa14.63□□□□□ -0.07
HIF3A-217ENST00000600236 BEGAINQ9BUH8 593 aa14.63□□□□□ -0.07
HIF3A-217ENST00000600236 GLIS2Q9BZE0 524 aaPredicted RBP14.63□□□□□ -0.07
HIF3A-217ENST00000600236 PRDM10Q9NQV6 1147 aa14.63□□□□□ -0.07
HIF3A-217ENST00000600236 WBP1LQ9NX94 342 aa14.63□□□□□ -0.07
HIF3A-217ENST00000600236 NEURL1BA8MQ27 555 aa14.62□□□□□ -0.07
HIF3A-217ENST00000600236 IGKV5-2P06315 115 aa14.62□□□□□ -0.07
HIF3A-217ENST00000600236 FMR1Q06787 632 aaKnown RBP eCLIP14.62□□□□□ -0.07
HIF3A-217ENST00000600236 GRM1Q13255 1194 aa14.62□□□□□ -0.07
HIF3A-217ENST00000600236 CST9Q5W186 159 aa14.62□□□□□ -0.07
HIF3A-217ENST00000600236 MYH16Q9H6N6 1097 aa14.62□□□□□ -0.07
HIF3A-217ENST00000600236 ZNF408Q9H9D4 720 aa14.62□□□□□ -0.07
HIF3A-217ENST00000600236 FANCIQ9NVI1 1328 aa14.62□□□□□ -0.07
HIF3A-217ENST00000600236 HIRAP54198 1017 aaPredicted RBP14.61□□□□□ -0.07
HIF3A-217ENST00000600236 FLIIQ13045 1269 aa14.61□□□□□ -0.07
HIF3A-217ENST00000600236 FKBP5Q13451 457 aaPredicted RBP14.61□□□□□ -0.07
HIF3A-217ENST00000600236 CWF19L2Q2TBE0 894 aaKnown RBP14.61□□□□□ -0.07
HIF3A-217ENST00000600236 DCPSQ96C86 337 aaKnown RBP14.61□□□□□ -0.07
HIF3A-217ENST00000600236 GPR101Q96P66 508 aaPredicted RBP14.61□□□□□ -0.07
HIF3A-217ENST00000600236 RTL9Q8NET4 1388 aa14.6□□□□□ -0.07
HIF3A-217ENST00000600236 CAPN15O75808 1086 aa14.6□□□□□ -0.07
HIF3A-217ENST00000600236 IGHMBP2P38935 993 aaKnown RBP14.6□□□□□ -0.07
HIF3A-217ENST00000600236 TBC1D10BQ4KMP7 808 aaPredicted RBP14.6□□□□□ -0.07
HIF3A-217ENST00000600236 CYP4F22Q6NT55 531 aa14.6□□□□□ -0.07
HIF3A-217ENST00000600236 SAMD7Q7Z3H4 446 aa14.6□□□□□ -0.07
HIF3A-217ENST00000600236 UBE3BQ7Z3V4 1068 aa14.6□□□□□ -0.07
HIF3A-217ENST00000600236 SAPCD2Q86UD0 394 aa14.6□□□□□ -0.07
HIF3A-217ENST00000600236 TTLL11Q8NHH1 800 aa14.6□□□□□ -0.07
HIF3A-217ENST00000600236 HHIPL1Q96JK4 782 aa14.6□□□□□ -0.07
HIF3A-217ENST00000600236 BSDC1Q9NW68 430 aaPredicted RBP14.6□□□□□ -0.07
HIF3A-217ENST00000600236 SALL2Q9Y467 1007 aaPredicted RBP14.6□□□□□ -0.07
HIF3A-217ENST00000600236 SHTN1A0MZ66 631 aa14.59□□□□□ -0.07
HIF3A-217ENST00000600236 VIL1P09327 827 aaKnown RBP14.59□□□□□ -0.07
HIF3A-217ENST00000600236 MAP2K2P36507 400 aa14.59□□□□□ -0.07
HIF3A-217ENST00000600236 KIF4BQ2VIQ3 1234 aa14.59□□□□□ -0.07
HIF3A-217ENST00000600236 RBM26Q5T8P6 1007 aaKnown RBP14.59□□□□□ -0.07
HIF3A-217ENST00000600236 DIEXFQ68CQ4 756 aaKnown RBP14.59□□□□□ -0.07
HIF3A-217ENST00000600236 G2E3Q7L622 706 aa14.59□□□□□ -0.07
HIF3A-217ENST00000600236 PODNQ7Z5L7 613 aa14.59□□□□□ -0.07
HIF3A-217ENST00000600236 AGBL3Q8NEM8 1001 aa14.59□□□□□ -0.07
HIF3A-217ENST00000600236 DNAAF4Q8WXU2 420 aa14.59□□□□□ -0.07
HIF3A-217ENST00000600236 GREM2Q9H772 168 aa14.59□□□□□ -0.07
HIF3A-217ENST00000600236 COL4A1P02462 1669 aa14.58□□□□□ -0.07
HIF3A-217ENST00000600236 H7C1W4 665 aa14.58□□□□□ -0.08
HIF3A-217ENST00000600236 GCKRQ14397 625 aa14.58□□□□□ -0.08
HIF3A-217ENST00000600236 RSBN1LQ6PCB5 846 aaPredicted RBP14.58□□□□□ -0.08
HIF3A-217ENST00000600236 KRT26Q7Z3Y9 468 aa14.58□□□□□ -0.08
HIF3A-217ENST00000600236 USP48Q86UV5 1035 aa14.58□□□□□ -0.08
HIF3A-217ENST00000600236 LINS1Q8NG48 757 aa14.58□□□□□ -0.08
HIF3A-217ENST00000600236 PLA2G12BQ9BX93 195 aa14.58□□□□□ -0.08
HIF3A-217ENST00000600236 KCNQ5Q9NR82 932 aa14.58□□□□□ -0.08
HIF3A-217ENST00000600236 TAF1P21675 1872 aa14.58□□□□□ -0.08
HIF3A-217ENST00000600236 MED23Q9ULK4 1368 aa14.58□□□□□ -0.08
HIF3A-217ENST00000600236 VAMP4O75379 141 aa14.57□□□□□ -0.08
HIF3A-217ENST00000600236 LBX1P52954 281 aa14.57□□□□□ -0.08
HIF3A-217ENST00000600236 EXOSC9Q06265 439 aaKnown RBP14.57□□□□□ -0.08
HIF3A-217ENST00000600236 SULF1Q8IWU6 871 aa14.57□□□□□ -0.08
HIF3A-217ENST00000600236 MPHOSPH8Q99549 860 aa14.57□□□□□ -0.08
HIF3A-217ENST00000600236 MINPP1Q9UNW1 487 aa14.57□□□□□ -0.08
HIF3A-217ENST00000600236 ZNF609O15014 1411 aa14.57□□□□□ -0.08
HIF3A-217ENST00000600236 USP17L3A6NCW0 530 aa14.56□□□□□ -0.08
HIF3A-217ENST00000600236 USP17L4A6NCW7 530 aa14.56□□□□□ -0.08
HIF3A-217ENST00000600236 HSPA8P11142 646 aaKnown RBP14.56□□□□□ -0.08
HIF3A-217ENST00000600236 CCT4P50991 539 aaKnown RBP14.56□□□□□ -0.08
HIF3A-217ENST00000600236 USP17L1Q7RTZ2 530 aa14.56□□□□□ -0.08
HIF3A-217ENST00000600236 FAM9BQ8IZU0 186 aa14.56□□□□□ -0.08
HIF3A-217ENST00000600236 C2orf69Q8N8R5 385 aa14.56□□□□□ -0.08
HIF3A-217ENST00000600236 ANKRD2Q9GZV1 360 aa14.56□□□□□ -0.08
HIF3A-217ENST00000600236 LEMD3Q9Y2U8 911 aa14.56□□□□□ -0.08
HIF3A-217ENST00000600236 CA12O43570 354 aa14.55□□□□□ -0.08
HIF3A-217ENST00000600236 USP17L8P0C7I0 530 aa14.55□□□□□ -0.08
HIF3A-217ENST00000600236 ITGA6P23229 1130 aa14.55□□□□□ -0.08
HIF3A-217ENST00000600236 HUNKP57058 714 aa14.55□□□□□ -0.08
HIF3A-217ENST00000600236 GBA2Q9HCG7 927 aaPredicted RBP14.55□□□□□ -0.08
HIF3A-217ENST00000600236 GGA3Q9NZ52 723 aa14.55□□□□□ -0.08
HIF3A-217ENST00000600236 THSD7BQ9C0I4 1608 aa14.55□□□□□ -0.08
HIF3A-217ENST00000600236 ANKRD18BA2A2Z9 1011 aa14.54□□□□□ -0.08
HIF3A-217ENST00000600236 EGFRP00533 1210 aa14.54□□□□□ -0.08
HIF3A-217ENST00000600236 KCNJ4P48050 445 aa14.54□□□□□ -0.08
HIF3A-217ENST00000600236 ZNF280AP59817 542 aaPredicted RBP14.54□□□□□ -0.08
HIF3A-217ENST00000600236 NOGQ13253 232 aa14.54□□□□□ -0.08
HIF3A-217ENST00000600236 FAM161AQ3B820 660 aa14.54□□□□□ -0.08
HIF3A-217ENST00000600236 COA1Q9GZY4 146 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms