RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SLC4A2P04920 1241 aa12.55□□□□□ -0.4
VRK3-216ENST00000599342 CTSWP56202 376 aa12.55□□□□□ -0.4
VRK3-216ENST00000599342 DOK7Q18PE1 504 aa12.55□□□□□ -0.4
VRK3-216ENST00000599342 ZC3H15Q8WU90 426 aaKnown RBP12.55□□□□□ -0.4
VRK3-216ENST00000599342 GPR101Q96P66 508 aaPredicted RBP12.55□□□□□ -0.4
VRK3-216ENST00000599342 ZBTB12Q9Y330 459 aaPredicted RBP12.55□□□□□ -0.4
VRK3-216ENST00000599342 SALL2Q9Y467 1007 aaPredicted RBP12.55□□□□□ -0.4
VRK3-216ENST00000599342 FANCIQ9NVI1 1328 aa12.55□□□□□ -0.4
VRK3-216ENST00000599342 NEURL1BA8MQ27 555 aa12.54□□□□□ -0.4
VRK3-216ENST00000599342 IGKV5-2P06315 115 aa12.54□□□□□ -0.4
VRK3-216ENST00000599342 RPS12P25398 132 aaKnown RBP12.54□□□□□ -0.4
VRK3-216ENST00000599342 ECE1P42892 770 aa12.54□□□□□ -0.4
VRK3-216ENST00000599342 FMR1Q06787 632 aaKnown RBP eCLIP12.54□□□□□ -0.4
VRK3-216ENST00000599342 CWF19L2Q2TBE0 894 aaKnown RBP12.54□□□□□ -0.4
VRK3-216ENST00000599342 WDR63Q8IWG1 891 aa12.54□□□□□ -0.4
VRK3-216ENST00000599342 TRPM4Q8TD43 1214 aa12.54□□□□□ -0.4
VRK3-216ENST00000599342 DPF2Q92785 391 aa12.54□□□□□ -0.4
VRK3-216ENST00000599342 WDR33Q9C0J8 1336 aaKnown RBP12.54□□□□□ -0.4
VRK3-216ENST00000599342 SHTN1A0MZ66 631 aa12.53□□□□□ -0.4
VRK3-216ENST00000599342 FOXN1O15353 648 aa12.53□□□□□ -0.4
VRK3-216ENST00000599342 CELF2O95319 508 aaKnown RBP12.53□□□□□ -0.4
VRK3-216ENST00000599342 CTCFP49711 727 aaPredicted RBP12.53□□□□□ -0.4
VRK3-216ENST00000599342 FLIIQ13045 1269 aa12.53□□□□□ -0.4
VRK3-216ENST00000599342 GRM1Q13255 1194 aa12.53□□□□□ -0.4
VRK3-216ENST00000599342 FKBP5Q13451 457 aaPredicted RBP12.53□□□□□ -0.4
VRK3-216ENST00000599342 CDC37L1Q7L3B6 337 aa12.53□□□□□ -0.4
VRK3-216ENST00000599342 G2E3Q7L622 706 aa12.53□□□□□ -0.4
VRK3-216ENST00000599342 GLIS2Q9BZE0 524 aaPredicted RBP12.53□□□□□ -0.4
VRK3-216ENST00000599342 ZNF408Q9H9D4 720 aa12.53□□□□□ -0.4
VRK3-216ENST00000599342 PGAP2Q9UHJ9 254 aa12.53□□□□□ -0.4
VRK3-216ENST00000599342 TLL2Q9Y6L7 1015 aa12.53□□□□□ -0.4
VRK3-216ENST00000599342 XDHP47989 1333 aa12.53□□□□□ -0.4
VRK3-216ENST00000599342 ATP2B4P23634 1241 aa12.52□□□□□ -0.41
VRK3-216ENST00000599342 HIRAP54198 1017 aaPredicted RBP12.52□□□□□ -0.41
VRK3-216ENST00000599342 MAP2K1Q02750 393 aaPredicted RBP12.52□□□□□ -0.41
VRK3-216ENST00000599342 CST9Q5W186 159 aa12.52□□□□□ -0.41
VRK3-216ENST00000599342 SAMD7Q7Z3H4 446 aa12.52□□□□□ -0.41
VRK3-216ENST00000599342 UBE3BQ7Z3V4 1068 aa12.52□□□□□ -0.41
VRK3-216ENST00000599342 CAPNS2Q96L46 248 aa12.52□□□□□ -0.41
VRK3-216ENST00000599342 MYH16Q9H6N6 1097 aa12.52□□□□□ -0.41
VRK3-216ENST00000599342 GREM2Q9H772 168 aa12.52□□□□□ -0.41
VRK3-216ENST00000599342 TRPM7Q96QT4 1865 aa12.52□□□□□ -0.41
VRK3-216ENST00000599342 RTL9Q8NET4 1388 aa12.52□□□□□ -0.41
VRK3-216ENST00000599342 TBC1D10BQ4KMP7 808 aaPredicted RBP12.51□□□□□ -0.41
VRK3-216ENST00000599342 CYP4F22Q6NT55 531 aa12.51□□□□□ -0.41
VRK3-216ENST00000599342 FAM9BQ8IZU0 186 aa12.51□□□□□ -0.41
VRK3-216ENST00000599342 TTLL11Q8NHH1 800 aa12.51□□□□□ -0.41
VRK3-216ENST00000599342 DNAAF4Q8WXU2 420 aa12.51□□□□□ -0.41
VRK3-216ENST00000599342 KCNQ5Q9NR82 932 aa12.51□□□□□ -0.41
VRK3-216ENST00000599342 WBP1LQ9NX94 342 aa12.51□□□□□ -0.41
VRK3-216ENST00000599342 CAPN15O75808 1086 aa12.5□□□□□ -0.41
VRK3-216ENST00000599342 VIL1P09327 827 aaKnown RBP12.5□□□□□ -0.41
VRK3-216ENST00000599342 IGHMBP2P38935 993 aaKnown RBP12.5□□□□□ -0.41
VRK3-216ENST00000599342 EXOSC9Q06265 439 aaKnown RBP12.5□□□□□ -0.41
VRK3-216ENST00000599342 GCKRQ14397 625 aa12.5□□□□□ -0.41
VRK3-216ENST00000599342 KIF4BQ2VIQ3 1234 aa12.5□□□□□ -0.41
VRK3-216ENST00000599342 RBM26Q5T8P6 1007 aaKnown RBP12.5□□□□□ -0.41
VRK3-216ENST00000599342 DCPSQ96C86 337 aaKnown RBP12.5□□□□□ -0.41
VRK3-216ENST00000599342 BEGAINQ9BUH8 593 aa12.5□□□□□ -0.41
VRK3-216ENST00000599342 PRDM10Q9NQV6 1147 aa12.5□□□□□ -0.41
VRK3-216ENST00000599342 BSDC1Q9NW68 430 aaPredicted RBP12.5□□□□□ -0.41
VRK3-216ENST00000599342 MYH3P11055 1940 aa12.49□□□□□ -0.41
VRK3-216ENST00000599342 H7C1W4 665 aa12.49□□□□□ -0.41
VRK3-216ENST00000599342 VAMP4O75379 141 aa12.49□□□□□ -0.41
VRK3-216ENST00000599342 KRT26Q7Z3Y9 468 aa12.49□□□□□ -0.41
VRK3-216ENST00000599342 SAPCD2Q86UD0 394 aa12.49□□□□□ -0.41
VRK3-216ENST00000599342 USP48Q86UV5 1035 aa12.49□□□□□ -0.41
VRK3-216ENST00000599342 AGBL3Q8NEM8 1001 aa12.49□□□□□ -0.41
VRK3-216ENST00000599342 LINS1Q8NG48 757 aa12.49□□□□□ -0.41
VRK3-216ENST00000599342 PLA2G12BQ9BX93 195 aa12.49□□□□□ -0.41
VRK3-216ENST00000599342 THSD7BQ9C0I4 1608 aa12.48□□□□□ -0.41
VRK3-216ENST00000599342 MED23Q9ULK4 1368 aa12.48□□□□□ -0.41
VRK3-216ENST00000599342 EGFRP00533 1210 aa12.48□□□□□ -0.41
VRK3-216ENST00000599342 ITGA6P23229 1130 aa12.48□□□□□ -0.41
VRK3-216ENST00000599342 LBX1P52954 281 aa12.48□□□□□ -0.41
VRK3-216ENST00000599342 RSBN1LQ6PCB5 846 aaPredicted RBP12.48□□□□□ -0.41
VRK3-216ENST00000599342 PODNQ7Z5L7 613 aa12.48□□□□□ -0.41
VRK3-216ENST00000599342 HHIPL1Q96JK4 782 aa12.48□□□□□ -0.41
VRK3-216ENST00000599342 MPHOSPH8Q99549 860 aa12.48□□□□□ -0.41
VRK3-216ENST00000599342 MINPP1Q9UNW1 487 aa12.48□□□□□ -0.41
VRK3-216ENST00000599342 ZNF609O15014 1411 aa12.47□□□□□ -0.41
VRK3-216ENST00000599342 SPEF2Q9C093 1822 aa12.47□□□□□ -0.41
VRK3-216ENST00000599342 USP17L3A6NCW0 530 aa12.47□□□□□ -0.41
VRK3-216ENST00000599342 USP17L4A6NCW7 530 aa12.47□□□□□ -0.41
VRK3-216ENST00000599342 CCT4P50991 539 aaKnown RBP12.47□□□□□ -0.41
VRK3-216ENST00000599342 FAM161AQ3B820 660 aa12.47□□□□□ -0.41
VRK3-216ENST00000599342 USP17L1Q7RTZ2 530 aa12.47□□□□□ -0.41
VRK3-216ENST00000599342 SULF1Q8IWU6 871 aa12.47□□□□□ -0.41
VRK3-216ENST00000599342 GGA3Q9NZ52 723 aa12.47□□□□□ -0.41
VRK3-216ENST00000599342 SCN9AQ15858 1988 aa12.47□□□□□ -0.41
VRK3-216ENST00000599342 ADM5C9JUS6 153 aa12.46□□□□□ -0.41
VRK3-216ENST00000599342 HSPA8P11142 646 aaKnown RBP12.46□□□□□ -0.41
VRK3-216ENST00000599342 MAP2K2P36507 400 aa12.46□□□□□ -0.41
VRK3-216ENST00000599342 CASP7P55210 303 aa12.46□□□□□ -0.41
VRK3-216ENST00000599342 FBXW7Q969H0 707 aa12.46□□□□□ -0.41
VRK3-216ENST00000599342 ANKRD2Q9GZV1 360 aa12.46□□□□□ -0.41
VRK3-216ENST00000599342 SPINK5Q9NQ38 1064 aaPredicted RBP12.46□□□□□ -0.41
VRK3-216ENST00000599342 LEMD3Q9Y2U8 911 aa12.46□□□□□ -0.41
VRK3-216ENST00000599342 CACNA1FO60840 1977 aa12.45□□□□□ -0.42
VRK3-216ENST00000599342 ANKRD18BA2A2Z9 1011 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms