RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 BSDC1Q9NW68 430 aaPredicted RBP18.11■□□□□ 0.49
SHKBP1-211ENST00000595945 TTC41PQ6P2S7 1318 aa18.11■□□□□ 0.49
SHKBP1-211ENST00000595945 DLEC1Q9Y238 1755 aa18.1■□□□□ 0.49
SHKBP1-211ENST00000595945 GSPT1P15170 499 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-211ENST00000595945 HOXA10P31260 410 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-211ENST00000595945 ILDR2Q71H61 639 aa18.1■□□□□ 0.49
SHKBP1-211ENST00000595945 MPHOSPH8Q99549 860 aa18.1■□□□□ 0.49
SHKBP1-211ENST00000595945 CCDC8Q9H0W5 538 aaPredicted RBP18.1■□□□□ 0.49
SHKBP1-211ENST00000595945 TLR7Q9NYK1 1049 aaKnown RBP18.1■□□□□ 0.49
SHKBP1-211ENST00000595945 IFIT2P09913 472 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-211ENST00000595945 RPS8P62241 208 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-211ENST00000595945 GRAPQ13588 217 aa18.09■□□□□ 0.49
SHKBP1-211ENST00000595945 METTL24Q5JXM2 366 aa18.09■□□□□ 0.49
SHKBP1-211ENST00000595945 DDX46Q7L014 1031 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-211ENST00000595945 GRAPLQ8TC17 118 aaPredicted RBP18.09■□□□□ 0.49
SHKBP1-211ENST00000595945 PI4K2BQ8TCG2 481 aa18.09■□□□□ 0.49
SHKBP1-211ENST00000595945 BCL11AQ9H165 835 aa18.09■□□□□ 0.49
SHKBP1-211ENST00000595945 DBNLQ9UJU6 430 aaKnown RBP18.09■□□□□ 0.49
SHKBP1-211ENST00000595945 C10orf71Q711Q0 1435 aa18.08■□□□□ 0.49
SHKBP1-211ENST00000595945 AKAP11Q9UKA4 1901 aa18.08■□□□□ 0.49
SHKBP1-211ENST00000595945 CACNA1SQ13698 1873 aa18.08■□□□□ 0.49
SHKBP1-211ENST00000595945 CRAMP1Q96RY5 1269 aa18.08■□□□□ 0.48
SHKBP1-211ENST00000595945 ECHDC1Q9NTX5 307 aa18.08■□□□□ 0.48
SHKBP1-211ENST00000595945 AKAP2Q9Y2D5 859 aa18.08■□□□□ 0.48
SHKBP1-211ENST00000595945 A0A1B0GUL7 405 aa18.07■□□□□ 0.48
SHKBP1-211ENST00000595945 PDE8BO95263 885 aa18.07■□□□□ 0.48
SHKBP1-211ENST00000595945 FGFR2P21802 821 aa18.07■□□□□ 0.48
SHKBP1-211ENST00000595945 TSHZ3Q63HK5 1081 aa18.07■□□□□ 0.48
SHKBP1-211ENST00000595945 RBM17Q96I25 401 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-211ENST00000595945 DBNDD2Q9BQY9 259 aa18.07■□□□□ 0.48
SHKBP1-211ENST00000595945 PDE6BP35913 854 aa18.06■□□□□ 0.48
SHKBP1-211ENST00000595945 CHRNDQ07001 517 aa18.06■□□□□ 0.48
SHKBP1-211ENST00000595945 ATP2B3Q16720 1220 aa18.06■□□□□ 0.48
SHKBP1-211ENST00000595945 C8orf34Q49A92 452 aa18.06■□□□□ 0.48
SHKBP1-211ENST00000595945 RPGRQ92834 1020 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-211ENST00000595945 GPATCH3Q96I76 525 aa18.06■□□□□ 0.48
SHKBP1-211ENST00000595945 MINPP1Q9UNW1 487 aa18.06■□□□□ 0.48
SHKBP1-211ENST00000595945 KIAA1551Q9HCM1 1747 aa18.06■□□□□ 0.48
SHKBP1-211ENST00000595945 SRGNP10124 158 aa18.05■□□□□ 0.48
SHKBP1-211ENST00000595945 TIMM10P62072 90 aa18.05■□□□□ 0.48
SHKBP1-211ENST00000595945 R3HDM1Q15032 1099 aaKnown RBP18.05■□□□□ 0.48
SHKBP1-211ENST00000595945 BACH2Q9BYV9 841 aa18.05■□□□□ 0.48
SHKBP1-211ENST00000595945 LTBP1Q14766 1721 aa18.05■□□□□ 0.48
SHKBP1-211ENST00000595945 ERC2O15083 957 aa18.04■□□□□ 0.48
SHKBP1-211ENST00000595945 GLRX3O76003 335 aaKnown RBP18.04■□□□□ 0.48
SHKBP1-211ENST00000595945 NPR1P16066 1061 aa18.04■□□□□ 0.48
SHKBP1-211ENST00000595945 ATP5JP18859 108 aa18.04■□□□□ 0.48
SHKBP1-211ENST00000595945 PUM3Q15397 648 aaKnown RBP18.04■□□□□ 0.48
SHKBP1-211ENST00000595945 HELBQ8NG08 1087 aaPredicted RBP18.04■□□□□ 0.48
SHKBP1-211ENST00000595945 MTFR1LQ9H019 292 aa18.04■□□□□ 0.48
SHKBP1-211ENST00000595945 SDSP20132 328 aa18.03■□□□□ 0.48
SHKBP1-211ENST00000595945 ADORA1P30542 326 aa18.03■□□□□ 0.48
SHKBP1-211ENST00000595945 LPIN2Q92539 896 aa18.03■□□□□ 0.48
SHKBP1-211ENST00000595945 XAGE2Q96GT9 111 aa18.03■□□□□ 0.48
SHKBP1-211ENST00000595945 NEUROD6Q96NK8 337 aa18.03■□□□□ 0.48
SHKBP1-211ENST00000595945 SLX4Q8IY92 1834 aa18.02■□□□□ 0.48
SHKBP1-211ENST00000595945 TAF5LO75529 589 aa18.02■□□□□ 0.48
SHKBP1-211ENST00000595945 BBOX1O75936 387 aa18.02■□□□□ 0.48
SHKBP1-211ENST00000595945 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.02■□□□□ 0.48
SHKBP1-211ENST00000595945 MASTLQ96GX5 879 aa18.02■□□□□ 0.48
SHKBP1-211ENST00000595945 ANKRD2Q9GZV1 360 aa18.02■□□□□ 0.48
SHKBP1-211ENST00000595945 ZBTB7AO95365 584 aa18.01■□□□□ 0.47
SHKBP1-211ENST00000595945 UBE4AQ14139 1066 aa18.01■□□□□ 0.47
SHKBP1-211ENST00000595945 STYK1Q6J9G0 422 aa18.01■□□□□ 0.47
SHKBP1-211ENST00000595945 TMC4Q7Z404 712 aa18.01■□□□□ 0.47
SHKBP1-211ENST00000595945 SGIP1Q9BQI5 828 aa18.01■□□□□ 0.47
SHKBP1-211ENST00000595945 MYH7P12883 1935 aa18.01■□□□□ 0.47
SHKBP1-211ENST00000595945 MYH13Q9UKX3 1938 aa18.01■□□□□ 0.47
SHKBP1-211ENST00000595945 SLC5A1P13866 664 aa18■□□□□ 0.47
SHKBP1-211ENST00000595945 C2CD5Q86YS7 1000 aa18■□□□□ 0.47
SHKBP1-211ENST00000595945 ZNF512BQ96KM6 892 aaPredicted RBP18■□□□□ 0.47
SHKBP1-211ENST00000595945 BRCA1P38398 1863 aaKnown RBP17.99■□□□□ 0.47
SHKBP1-211ENST00000595945 MYO5AQ9Y4I1 1855 aaKnown RBP17.99■□□□□ 0.47
SHKBP1-211ENST00000595945 SNAP23O00161 211 aa17.99■□□□□ 0.47
SHKBP1-211ENST00000595945 ALDH1B1P30837 517 aa17.99■□□□□ 0.47
SHKBP1-211ENST00000595945 ATF5Q9Y2D1 282 aaPredicted RBP17.99■□□□□ 0.47
SHKBP1-211ENST00000595945 IRS2Q9Y4H2 1338 aa17.98■□□□□ 0.47
SHKBP1-211ENST00000595945 PSDA5PKW4 1024 aaPredicted RBP17.98■□□□□ 0.47
SHKBP1-211ENST00000595945 H0YIN7 160 aa17.98■□□□□ 0.47
SHKBP1-211ENST00000595945 CDC45O75419 566 aa17.98■□□□□ 0.47
SHKBP1-211ENST00000595945 SLC51AQ86UW1 340 aa17.98■□□□□ 0.47
SHKBP1-211ENST00000595945 HAUS7Q99871 368 aa17.98■□□□□ 0.47
SHKBP1-211ENST00000595945 PPEF1O14829 653 aaPredicted RBP17.97■□□□□ 0.47
SHKBP1-211ENST00000595945 IFIT1P09914 478 aaKnown RBP17.97■□□□□ 0.47
SHKBP1-211ENST00000595945 POLD1P28340 1107 aa17.97■□□□□ 0.47
SHKBP1-211ENST00000595945 CCDC158Q5M9N0 1113 aa17.97■□□□□ 0.47
SHKBP1-211ENST00000595945 SP8Q8IXZ3 490 aa17.97■□□□□ 0.47
SHKBP1-211ENST00000595945 BOLA2Q9H3K6 86 aa17.97■□□□□ 0.47
SHKBP1-211ENST00000595945 DOCK2Q92608 1830 aa17.97■□□□□ 0.47
SHKBP1-211ENST00000595945 XDHP47989 1333 aa17.97■□□□□ 0.47
SHKBP1-211ENST00000595945 WTIPA6NIX2 430 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-211ENST00000595945 TRIM6-TRIM34B2RNG4 842 aa17.96■□□□□ 0.47
SHKBP1-211ENST00000595945 ZBTB22O15209 634 aa17.96■□□□□ 0.47
SHKBP1-211ENST00000595945 ARID4AP29374 1257 aaPredicted RBP17.96■□□□□ 0.47
SHKBP1-211ENST00000595945 CHRNA5P30532 468 aa17.96■□□□□ 0.47
SHKBP1-211ENST00000595945 GPSM2P81274 684 aa17.96■□□□□ 0.47
SHKBP1-211ENST00000595945 TTC39AQ5SRH9 613 aa17.96■□□□□ 0.47
SHKBP1-211ENST00000595945 TBC1D9Q6ZT07 1266 aa17.96■□□□□ 0.47
SHKBP1-211ENST00000595945 TSHZ2Q9NRE2 1034 aa17.96■□□□□ 0.47
SHKBP1-211ENST00000595945 PODXL2Q9NZ53 605 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms