RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 NEXNQ0ZGT2 675 aa17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 IFFO2Q5TF58 517 aa17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 PLCD3Q8N3E9 789 aa17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 MRFAP1L1Q96HT8 127 aa17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 C16orf45Q96MC5 204 aaPredicted RBP17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 DBNLQ9UJU6 430 aaKnown RBP17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 RCOR1Q9UKL0 485 aa17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 CAMTA1Q9Y6Y1 1673 aa17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 PSME1Q06323 249 aa17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 CCDC144BQ3MJ40 725 aa17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 CCDC144CPQ8IYA2 1237 aa17.48■□□□□ 0.39
SMARCA4-219ENST00000592604 CYP21A2P08686 494 aa17.47■□□□□ 0.39
SMARCA4-219ENST00000592604 RFX5P48382 616 aaPredicted RBP17.47■□□□□ 0.39
SMARCA4-219ENST00000592604 TNNI3KQ59H18 835 aa17.47■□□□□ 0.39
SMARCA4-219ENST00000592604 NAA16Q6N069 864 aaPredicted RBP17.47■□□□□ 0.39
SMARCA4-219ENST00000592604 FPGT-TNNI3KV9GXZ4 949 aa17.47■□□□□ 0.39
SMARCA4-219ENST00000592604 NEMFO60524 1076 aa17.47■□□□□ 0.39
SMARCA4-219ENST00000592604 PFKFB2O60825 505 aa17.47■□□□□ 0.39
SMARCA4-219ENST00000592604 SCRN1Q12765 414 aa17.47■□□□□ 0.39
SMARCA4-219ENST00000592604 DDX11Q96FC9 970 aa17.47■□□□□ 0.39
SMARCA4-219ENST00000592604 METTL22Q9BUU2 404 aaPredicted RBP17.47■□□□□ 0.39
SMARCA4-219ENST00000592604 ZNF609O15014 1411 aa17.46■□□□□ 0.39
SMARCA4-219ENST00000592604 RBM6P78332 1123 aaKnown RBP17.46■□□□□ 0.39
SMARCA4-219ENST00000592604 MCMDC2Q4G0Z9 681 aa17.46■□□□□ 0.39
SMARCA4-219ENST00000592604 U2AF2P26368 475 aaKnown RBP eCLIP17.46■□□□□ 0.39
SMARCA4-219ENST00000592604 LRRC8AQ8IWT6 810 aa17.46■□□□□ 0.39
SMARCA4-219ENST00000592604 GOLGA6L19H0YKK7 550 aa17.45■□□□□ 0.38
SMARCA4-219ENST00000592604 GCP02774 474 aa17.45■□□□□ 0.38
SMARCA4-219ENST00000592604 HSP90B1P14625 803 aaKnown RBP17.45■□□□□ 0.38
SMARCA4-219ENST00000592604 PTPN12Q05209 780 aaKnown RBP17.45■□□□□ 0.38
SMARCA4-219ENST00000592604 ATL3Q6DD88 541 aa17.45■□□□□ 0.38
SMARCA4-219ENST00000592604 HMGB1P09429 215 aaKnown RBP17.45■□□□□ 0.38
SMARCA4-219ENST00000592604 STX1AQ16623 288 aa17.45■□□□□ 0.38
SMARCA4-219ENST00000592604 ANKRD24Q8TF21 1146 aa17.45■□□□□ 0.38
SMARCA4-219ENST00000592604 SLIT3O75094 1523 aa17.45■□□□□ 0.38
SMARCA4-219ENST00000592604 TPD52L1Q16890 204 aaPredicted RBP17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 C11orf57Q6ZUT1 292 aaPredicted RBP17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 HAUS7Q99871 368 aa17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 LAMA4Q16363 1823 aa17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 TFCP2Q12800 502 aa17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 RABL6Q3YEC7 729 aaPredicted RBP17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 NSUN7Q8NE18 718 aaKnown RBP17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 CCDC112Q8NEF3 446 aa17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 SPDYE4A6NLX3 237 aa17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 SNW1Q13573 536 aaKnown RBP17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 ZNF790Q6PG37 636 aa17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 CCDC129Q6ZRS4 1044 aa17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 CCAR1Q8IX12 1150 aaKnown RBP17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 XAGE3Q8WTP9 111 aa17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 MYD88Q99836 296 aa17.44■□□□□ 0.38
SMARCA4-219ENST00000592604 C5P01031 1676 aa17.43■□□□□ 0.38
SMARCA4-219ENST00000592604 DHX32Q7L7V1 743 aaKnown RBP17.43■□□□□ 0.38
SMARCA4-219ENST00000592604 ENGASEQ8NFI3 743 aa17.43■□□□□ 0.38
SMARCA4-219ENST00000592604 SEC62Q99442 399 aaKnown RBP17.43■□□□□ 0.38
SMARCA4-219ENST00000592604 AGXT2Q9BYV1 514 aa17.43■□□□□ 0.38
SMARCA4-219ENST00000592604 OGFRQ9NZT2 677 aa17.43■□□□□ 0.38
SMARCA4-219ENST00000592604 ESCO1Q5FWF5 840 aa17.43■□□□□ 0.38
SMARCA4-219ENST00000592604 STOX1Q6ZVD7 989 aa17.43■□□□□ 0.38
SMARCA4-219ENST00000592604 COPS6Q7L5N1 327 aa17.43■□□□□ 0.38
SMARCA4-219ENST00000592604 SH3TC1Q8TE82 1336 aa17.42■□□□□ 0.38
SMARCA4-219ENST00000592604 CTDNEP1O95476 244 aa17.42■□□□□ 0.38
SMARCA4-219ENST00000592604 GOLPH3LQ9H4A5 285 aa17.42■□□□□ 0.38
SMARCA4-219ENST00000592604 CTNNA3Q9UI47 895 aa17.42■□□□□ 0.38
SMARCA4-219ENST00000592604 TICAM2Q86XR7 235 aa17.42■□□□□ 0.38
SMARCA4-219ENST00000592604 HOMEZQ8IX15 550 aa17.42■□□□□ 0.38
SMARCA4-219ENST00000592604 CGNQ9P2M7 1197 aaKnown RBP17.42■□□□□ 0.38
SMARCA4-219ENST00000592604 FER1L4A9Z1Z3 1794 aa17.42■□□□□ 0.38
SMARCA4-219ENST00000592604 KIF20AO95235 890 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 EXOSC10Q01780 885 aaKnown RBP17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 CEP135Q66GS9 1140 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 LRP10Q7Z4F1 713 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 DBNDD2Q9BQY9 259 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 KCND1Q9NSA2 647 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 CHGBP05060 677 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 MYL6BP14649 208 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 CCDC73Q6ZRK6 1079 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 ANKRD13DQ6ZTN6 518 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 NYAP1Q6ZVC0 841 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 KBTBD3Q8NAB2 608 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 ZNF396Q96N95 335 aaPredicted RBP17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 ANO10Q9NW15 660 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 NDUFB9Q9Y6M9 179 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 CEBPZQ03701 1054 aaKnown RBP17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 FAM160A1Q05DH4 1040 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 DHX40Q8IX18 779 aaKnown RBP17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 USP28Q96RU2 1077 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 DNAJC2Q99543 621 aaKnown RBP17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 LRRC2Q9BYS8 371 aa17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 ZHX1Q9UKY1 873 aaPredicted RBP17.41■□□□□ 0.38
SMARCA4-219ENST00000592604 SALL1Q9NSC2 1324 aa17.4■□□□□ 0.38
SMARCA4-219ENST00000592604 SCN11AQ9UI33 1791 aa17.4■□□□□ 0.38
SMARCA4-219ENST00000592604 SLC39A6Q13433 755 aa17.4■□□□□ 0.38
SMARCA4-219ENST00000592604 PTPDC1A2A3K4 754 aa17.4■□□□□ 0.38
SMARCA4-219ENST00000592604 DSCC1Q9BVC3 393 aa17.4■□□□□ 0.38
SMARCA4-219ENST00000592604 SLC52A2Q9HAB3 445 aa17.4■□□□□ 0.38
SMARCA4-219ENST00000592604 HELLSQ9NRZ9 838 aa17.4■□□□□ 0.38
SMARCA4-219ENST00000592604 PALLDQ8WX93 1383 aa17.39■□□□□ 0.37
SMARCA4-219ENST00000592604 BECN2A8MW95 431 aa17.39■□□□□ 0.37
SMARCA4-219ENST00000592604 KINO60870 393 aaKnown RBP17.39■□□□□ 0.37
SMARCA4-219ENST00000592604 SKILP12757 684 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms