RNA–Protein interactions for RNA: ENST00000591545.5

SMARCA4-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 5,193 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-216ENST00000591545 PRIM1P49642 420 aaKnown RBP15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 PRIMPOLQ96LW4 560 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 ABCA8O94911 1581 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 SLC4A8Q2Y0W8 1093 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 CCDC91Q7Z6B0 441 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 C8orf58Q8NAV2 365 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 CCDC87Q9NVE4 849 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 PAFAH1B1P43034 410 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 HAND2P61296 217 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 TMTC2Q8N394 836 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 YEATS4O95619 227 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 MEIS3Q99687 375 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 CNNM2Q9H8M5 875 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 H0YIN7 160 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 GNAQP50148 359 aa15.3■□□□□ 0.04
SMARCA4-216ENST00000591545 SH3TC1Q8TE82 1336 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 ZNF790Q6PG37 636 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 USP16Q9Y5T5 823 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 ERICH4A6NGS2 130 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 NEBLO76041 1014 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 BABAM1Q9NWV8 329 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 MAST1Q9Y2H9 1570 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 CFAP74Q9C0B2 1584 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 DYNC1I1O14576 645 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 ATP8B2P98198 1209 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 FLAD1Q8NFF5 587 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 TBC1D32Q96NH3 1257 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 GJA3Q9Y6H8 435 aa15.29■□□□□ 0.04
SMARCA4-216ENST00000591545 SPDYE4A6NLX3 237 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 LDHBP07195 334 aaKnown RBP15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 WTAPQ15007 396 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 CCDC150Q8NCX0 1101 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 UBA5Q9GZZ9 404 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 USP25Q9UHP3 1055 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 TRPC5Q9UL62 973 aaPredicted RBP15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 EIF6P56537 245 aaKnown RBP15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 UBE2HP62256 183 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 SLC9C2Q5TAH2 1124 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 NEK1Q96PY6 1258 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 TCP11L1Q9NUJ3 509 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 SAMM50Q9Y512 469 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 SPATA31E1Q6ZUB1 1445 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 COL17A1Q9UMD9 1497 aaPredicted RBP15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 PER1O15534 1290 aaPredicted RBP15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 CACNA2D4Q7Z3S7 1137 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 METAP2P50579 478 aaKnown RBP eCLIP15.28■□□□□ 0.041e-6■■□□□ 12.1
SMARCA4-216ENST00000591545 MICU3Q86XE3 530 aa15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 NAA15Q9BXJ9 866 aaKnown RBP15.28■□□□□ 0.04
SMARCA4-216ENST00000591545 MAGEB6P1A0A0J9YX57 407 aa15.27■□□□□ 0.04
SMARCA4-216ENST00000591545 STX6O43752 255 aa15.27■□□□□ 0.04
SMARCA4-216ENST00000591545 GNAT2P19087 354 aa15.27■□□□□ 0.04
SMARCA4-216ENST00000591545 SUPT20HQ8NEM7 779 aa15.27■□□□□ 0.04
SMARCA4-216ENST00000591545 ARHGEF5Q12774 1597 aa15.27■□□□□ 0.04
SMARCA4-216ENST00000591545 LTKP29376 864 aa15.27■□□□□ 0.04
SMARCA4-216ENST00000591545 KANK3Q6NY19 840 aa15.27■□□□□ 0.04
SMARCA4-216ENST00000591545 CALML4Q96GE6 196 aa15.27■□□□□ 0.04
SMARCA4-216ENST00000591545 PAXBP1Q9Y5B6 917 aa15.27■□□□□ 0.04
SMARCA4-216ENST00000591545 LUZP1Q86V48 1076 aa15.27■□□□□ 0.03
SMARCA4-216ENST00000591545 MRPL50Q8N5N7 158 aaKnown RBP15.27■□□□□ 0.03
SMARCA4-216ENST00000591545 FSIP1Q8NA03 581 aa15.27■□□□□ 0.03
SMARCA4-216ENST00000591545 DDX17Q92841 729 aaKnown RBP15.27■□□□□ 0.03
SMARCA4-216ENST00000591545 CCT2P78371 535 aaKnown RBP15.27■□□□□ 0.03
SMARCA4-216ENST00000591545 ZNF772Q68DY9 489 aaPredicted RBP15.27■□□□□ 0.03
SMARCA4-216ENST00000591545 CNNM3Q8NE01 707 aa15.27■□□□□ 0.03
SMARCA4-216ENST00000591545 PLEKHG3A1L390 1219 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 STXBP4Q6ZWJ1 553 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 PLBD2Q8NHP8 589 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 PDE6BP35913 854 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 VTI1AQ96AJ9 217 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 MBD5Q9P267 1494 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 GCOM1H8Y6P7 765 aaPredicted RBP15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 MYZAPP0CAP1 466 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 MAP2K1Q02750 393 aaPredicted RBP15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 HELBQ8NG08 1087 aaPredicted RBP15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 GIMAP7Q8NHV1 300 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 DYDC1Q8WWB3 177 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 UFL1O94874 794 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 IFIT1BQ5T764 474 aaKnown RBP15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 TBC1D9Q6ZT07 1266 aa15.26■□□□□ 0.03
SMARCA4-216ENST00000591545 TMEM94Q12767 1356 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 CCDC171Q6TFL3 1326 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 NBPF7P0C2Y1 421 aaPredicted RBP15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 ALS2CR12Q96Q35 445 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 ANKRD44Q8N8A2 993 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 AMPD3Q01432 767 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 GUCY1B3Q02153 619 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 CWF19L2Q2TBE0 894 aaKnown RBP15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 ZSCAN16Q9H4T2 348 aaPredicted RBP15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.25■□□□□ 0.032e-7■■□□□ 12
SMARCA4-216ENST00000591545 ADCY5O95622 1261 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 HOXB7P09629 217 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 HDAC1Q13547 482 aaPredicted RBP15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 SMC1AQ14683 1233 aaKnown RBP15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 SLC52A2Q9HAB3 445 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 ORC3Q9UBD5 711 aaPredicted RBP15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 GGA1Q9UJY5 639 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 DENND2AQ9ULE3 1009 aa15.25■□□□□ 0.03
SMARCA4-216ENST00000591545 BMS1Q14692 1282 aaKnown RBP15.24■□□□□ 0.03
SMARCA4-216ENST00000591545 TTC6Q86TZ1 520 aa15.24■□□□□ 0.03
SMARCA4-216ENST00000591545 FAM114A1Q8IWE2 563 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms