RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SIK1P57059 783 aa8.15□□□□□ -1.1
SMCHD1-204ENST00000581226 HYAL2Q12891 473 aa8.15□□□□□ -1.1
SMCHD1-204ENST00000581226 CCDC27Q2M243 656 aa8.15□□□□□ -1.1
SMCHD1-204ENST00000581226 ASB16Q96NS5 453 aa8.15□□□□□ -1.1
SMCHD1-204ENST00000581226 IGHA2P01877 340 aa8.14□□□□□ -1.11
SMCHD1-204ENST00000581226 HOXD8P13378 290 aaPredicted RBP8.14□□□□□ -1.11
SMCHD1-204ENST00000581226 CHRDQ9H2X0 955 aa8.14□□□□□ -1.11
SMCHD1-204ENST00000581226 RRAGCQ9HB90 399 aa8.14□□□□□ -1.11
SMCHD1-204ENST00000581226 ZFYVE28Q9HCC9 887 aa8.14□□□□□ -1.11
SMCHD1-204ENST00000581226 KANSL3Q9P2N6 904 aa8.14□□□□□ -1.11
SMCHD1-204ENST00000581226 EIF2AK2P19525 551 aaKnown RBP8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 PLCB3Q01970 1234 aa8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 KCNMA1Q12791 1236 aa8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 COL13A1Q5TAT6 717 aaPredicted RBP8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 TMCO4Q5TGY1 634 aa8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 KANK3Q6NY19 840 aa8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 NCAPG2Q86XI2 1143 aa8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 SPACA7Q96KW9 195 aa8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 RBSNQ9H1K0 784 aa8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 NAGPAQ9UK23 515 aa8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 STARD13Q9Y3M8 1113 aa8.13□□□□□ -1.11
SMCHD1-204ENST00000581226 EREGO14944 169 aa8.12□□□□□ -1.11
SMCHD1-204ENST00000581226 GHRHP01286 108 aa8.12□□□□□ -1.11
SMCHD1-204ENST00000581226 ORC1Q13415 861 aa8.12□□□□□ -1.11
SMCHD1-204ENST00000581226 PERM1Q5SV97 790 aa8.12□□□□□ -1.11
SMCHD1-204ENST00000581226 PSAPL1Q6NUJ1 521 aa8.12□□□□□ -1.11
SMCHD1-204ENST00000581226 ELMSAN1Q6PJG2 1045 aa8.12□□□□□ -1.11
SMCHD1-204ENST00000581226 ALKBH8Q96BT7 664 aaKnown RBP8.12□□□□□ -1.11
SMCHD1-204ENST00000581226 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.12□□□□□ -1.11
SMCHD1-204ENST00000581226 M0R082 166 aa8.11□□□□□ -1.11
SMCHD1-204ENST00000581226 TREHO43280 583 aa8.11□□□□□ -1.11
SMCHD1-204ENST00000581226 KIF4AO95239 1232 aa8.11□□□□□ -1.11
SMCHD1-204ENST00000581226 MICALL1Q8N3F8 863 aa8.11□□□□□ -1.11
SMCHD1-204ENST00000581226 ZNF417Q8TAU3 575 aa8.11□□□□□ -1.11
SMCHD1-204ENST00000581226 NUDT8Q8WV74 236 aa8.11□□□□□ -1.11
SMCHD1-204ENST00000581226 ZNF587Q96SQ5 575 aaPredicted RBP8.11□□□□□ -1.11
SMCHD1-204ENST00000581226 SALL4Q9UJQ4 1053 aa8.11□□□□□ -1.11
SMCHD1-204ENST00000581226 ADAMTS8Q9UP79 889 aa8.11□□□□□ -1.11
SMCHD1-204ENST00000581226 AMOTL2Q9Y2J4 779 aa8.11□□□□□ -1.11
SMCHD1-204ENST00000581226 ANKRD33BA6NCL7 494 aa8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 EIF1AYO14602 144 aaKnown RBP8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 CPNE3O75131 537 aaKnown RBP8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 RGS9O75916 674 aaPredicted RBP8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 ALBP02768 609 aa8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 POLR3DP05423 398 aaPredicted RBP8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 GSK3AP49840 483 aa8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 DSC3Q14574 896 aa8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 TMEM151AQ8N4L1 468 aa8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 CSRNP1Q96S65 589 aa8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 SMG9Q9H0W8 520 aaKnown RBP8.1□□□□□ -1.11
SMCHD1-204ENST00000581226 LILRB5O75023 590 aa8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 SNRPNP63162 240 aaKnown RBP8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 USPL1Q5W0Q7 1092 aa8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 C20orf204Q6ZNR8 217 aa8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 C8orf86Q6ZUL3 223 aa8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 CEP120Q8N960 986 aa8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 PLD4Q96BZ4 506 aa8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 LPIN3Q9BQK8 851 aa8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 DNAJC25Q9H1X3 360 aa8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 JPH1Q9HDC5 661 aaPredicted RBP8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 FRRS1LQ9P0K9 344 aa8.09□□□□□ -1.11
SMCHD1-204ENST00000581226 GDF11O95390 407 aa8.08□□□□□ -1.12
SMCHD1-204ENST00000581226 EDN3P14138 238 aa8.08□□□□□ -1.12
SMCHD1-204ENST00000581226 MAPK8P45983 427 aa8.08□□□□□ -1.12
SMCHD1-204ENST00000581226 DGKGP49619 791 aa8.08□□□□□ -1.12
SMCHD1-204ENST00000581226 DNAJC14Q6Y2X3 702 aaPredicted RBP8.08□□□□□ -1.12
SMCHD1-204ENST00000581226 HOXB4P17483 251 aaPredicted RBP8.07□□□□□ -1.12
SMCHD1-204ENST00000581226 ATP11AP98196 1134 aa8.07□□□□□ -1.12
SMCHD1-204ENST00000581226 RASSF7Q02833 373 aa8.07□□□□□ -1.12
SMCHD1-204ENST00000581226 PODNQ7Z5L7 613 aa8.07□□□□□ -1.12
SMCHD1-204ENST00000581226 PBX4Q9BYU1 374 aa8.07□□□□□ -1.12
SMCHD1-204ENST00000581226 RASSF4Q9H2L5 321 aa8.07□□□□□ -1.12
SMCHD1-204ENST00000581226 CNTNAP5Q8WYK1 1306 aa8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 PNMA6FA0A0J9YX94 578 aa8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 ACPPP15309 386 aa8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 MFAP1P55081 439 aaKnown RBP8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 FMR1Q06787 632 aaKnown RBP eCLIP8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 CEP135Q66GS9 1140 aa8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 GALNT12Q8IXK2 581 aa8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 BEND7Q8N7W2 519 aaPredicted RBP8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 TTC9Q92623 222 aa8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 CCDC74AQ96AQ1 378 aa8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 PRDM6Q9NQX0 595 aa8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 MKL2Q9ULH7 1088 aa8.06□□□□□ -1.12
SMCHD1-204ENST00000581226 RNF225M0QZC1 329 aaPredicted RBP8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 SMNDC1O75940 238 aaKnown RBP eCLIP8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 P4HBP07237 508 aaKnown RBP8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 AFF1P51825 1210 aaKnown RBP8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 ENOX2Q16206 610 aaKnown RBP8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 GDF6Q6KF10 455 aaPredicted RBP8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 LINC00114Q6XXX2 140 aa8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 SCARF2Q96GP6 870 aaPredicted RBP8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 OSMRQ99650 979 aa8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 LATS2Q9NRM7 1088 aa8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 DZANK1Q9NVP4 752 aa8.05□□□□□ -1.12
SMCHD1-204ENST00000581226 PIK3R2O00459 728 aa8.04□□□□□ -1.12
SMCHD1-204ENST00000581226 TRPA1O75762 1119 aa8.04□□□□□ -1.12
SMCHD1-204ENST00000581226 ERCC3P19447 782 aa8.04□□□□□ -1.12
SMCHD1-204ENST00000581226 ZKSCAN3Q9BRR0 538 aa8.04□□□□□ -1.12
SMCHD1-204ENST00000581226 NPHS2Q9NP85 383 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms