RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 CHRNA4P43681 627 aa6.13□□□□□ -1.43
NUP88-209ENST00000574855 FKBP4Q02790 459 aaKnown RBP eCLIP6.13□□□□□ -1.43
NUP88-209ENST00000574855 DNM1Q05193 864 aaKnown RBP6.13□□□□□ -1.43
NUP88-209ENST00000574855 AAMPQ13685 434 aa6.13□□□□□ -1.43
NUP88-209ENST00000574855 MSL1Q68DK7 614 aa6.13□□□□□ -1.43
NUP88-209ENST00000574855 PDE12Q6L8Q7 609 aaKnown RBP6.13□□□□□ -1.43
NUP88-209ENST00000574855 DMRTC2Q8IXT2 367 aaPredicted RBP6.13□□□□□ -1.43
NUP88-209ENST00000574855 SPACA7Q96KW9 195 aa6.13□□□□□ -1.43
NUP88-209ENST00000574855 NSUN5Q96P11 429 aaKnown RBP6.13□□□□□ -1.43
NUP88-209ENST00000574855 NACC1Q96RE7 527 aa6.13□□□□□ -1.43
NUP88-209ENST00000574855 A0A0A0MRY4 1105 aa6.12□□□□□ -1.43
NUP88-209ENST00000574855 ELNP15502 786 aa6.12□□□□□ -1.43
NUP88-209ENST00000574855 MPSTP25325 297 aa6.12□□□□□ -1.43
NUP88-209ENST00000574855 MZF1P28698 734 aaPredicted RBP6.12□□□□□ -1.43
NUP88-209ENST00000574855 EIF1AXP47813 144 aaKnown RBP6.12□□□□□ -1.43
NUP88-209ENST00000574855 SF3B2Q13435 895 aaKnown RBP6.12□□□□□ -1.43
NUP88-209ENST00000574855 WFDC8Q8IUA0 241 aa6.12□□□□□ -1.43
NUP88-209ENST00000574855 EDEM1Q92611 657 aa6.12□□□□□ -1.43
NUP88-209ENST00000574855 PLD4Q96BZ4 506 aa6.12□□□□□ -1.43
NUP88-209ENST00000574855 ELP3Q9H9T3 547 aa6.12□□□□□ -1.43
NUP88-209ENST00000574855 ABI2Q9NYB9 513 aaPredicted RBP6.12□□□□□ -1.43
NUP88-209ENST00000574855 ABL1P00519 1130 aa6.11□□□□□ -1.43
NUP88-209ENST00000574855 NPR3P17342 541 aa6.11□□□□□ -1.43
NUP88-209ENST00000574855 GATA4P43694 442 aa6.11□□□□□ -1.43
NUP88-209ENST00000574855 HYAL2Q12891 473 aa6.11□□□□□ -1.43
NUP88-209ENST00000574855 MTMR3Q13615 1198 aa6.11□□□□□ -1.43
NUP88-209ENST00000574855 GRIK4Q16099 956 aa6.11□□□□□ -1.43
NUP88-209ENST00000574855 GRIK5Q16478 980 aa6.11□□□□□ -1.43
NUP88-209ENST00000574855 C8orf34Q49A92 452 aa6.11□□□□□ -1.43
NUP88-209ENST00000574855 ZNF438Q7Z4V0 828 aa6.11□□□□□ -1.43
NUP88-209ENST00000574855 DTWD1Q8N5C7 304 aa6.11□□□□□ -1.43
NUP88-209ENST00000574855 C9orf172C9J069 976 aa6.1□□□□□ -1.43
NUP88-209ENST00000574855 PDGFAP04085 211 aa6.1□□□□□ -1.43
NUP88-209ENST00000574855 BAG6P46379 1132 aa6.1□□□□□ -1.43
NUP88-209ENST00000574855 XKR5Q6UX68 686 aa6.1□□□□□ -1.43
NUP88-209ENST00000574855 ILDR2Q71H61 639 aa6.1□□□□□ -1.43
NUP88-209ENST00000574855 KRTAP1-3Q8IUG1 177 aa6.1□□□□□ -1.43
NUP88-209ENST00000574855 FMR1NBQ8N0W7 255 aaPredicted RBP6.1□□□□□ -1.43
NUP88-209ENST00000574855 CACTIN-AS1Q8N1I8 211 aa6.1□□□□□ -1.43
NUP88-209ENST00000574855 USP5P45974 858 aa6.09□□□□□ -1.43
NUP88-209ENST00000574855 GDF6Q6KF10 455 aaPredicted RBP6.09□□□□□ -1.43
NUP88-209ENST00000574855 IL22RA1Q8N6P7 574 aa6.09□□□□□ -1.43
NUP88-209ENST00000574855 GGNBP2Q9H3C7 697 aa6.09□□□□□ -1.43
NUP88-209ENST00000574855 TMEM63CQ9P1W3 806 aa6.09□□□□□ -1.43
NUP88-209ENST00000574855 POLIQ9UNA4 740 aa6.09□□□□□ -1.43
NUP88-209ENST00000574855 SMNDC1O75940 238 aaKnown RBP eCLIP6.08□□□□□ -1.44
NUP88-209ENST00000574855 NRG1Q02297 640 aaPredicted RBP6.08□□□□□ -1.44
NUP88-209ENST00000574855 COL13A1Q5TAT6 717 aaPredicted RBP6.08□□□□□ -1.44
NUP88-209ENST00000574855 NCAPG2Q86XI2 1143 aa6.08□□□□□ -1.44
NUP88-209ENST00000574855 FBXO11Q86XK2 927 aa6.08□□□□□ -1.44
NUP88-209ENST00000574855 RETREG2Q8NC44 543 aa6.08□□□□□ -1.44
NUP88-209ENST00000574855 PMEPA1Q969W9 287 aa6.08□□□□□ -1.44
NUP88-209ENST00000574855 LENG1Q96BZ8 264 aaPredicted RBP6.08□□□□□ -1.44
NUP88-209ENST00000574855 ANO2Q9NQ90 1003 aa6.08□□□□□ -1.44
NUP88-209ENST00000574855 EGFL7Q9UHF1 273 aa6.08□□□□□ -1.44
NUP88-209ENST00000574855 KIF4AO95239 1232 aa6.07□□□□□ -1.44
NUP88-209ENST00000574855 CYP2E1P05181 493 aaPredicted RBP6.07□□□□□ -1.44
NUP88-209ENST00000574855 CES1P23141 567 aa6.07□□□□□ -1.44
NUP88-209ENST00000574855 EHHADHQ08426 723 aa6.07□□□□□ -1.44
NUP88-209ENST00000574855 ZNF211Q13398 564 aaPredicted RBP6.07□□□□□ -1.44
NUP88-209ENST00000574855 CEP135Q66GS9 1140 aa6.07□□□□□ -1.44
NUP88-209ENST00000574855 PSMG3-AS1Q96PY0 264 aa6.07□□□□□ -1.44
NUP88-209ENST00000574855 MUC3BQ9H195 1237 aa6.07□□□□□ -1.44
NUP88-209ENST00000574855 CNTN3Q9P232 1028 aa6.07□□□□□ -1.44
NUP88-209ENST00000574855 USP21Q9UK80 565 aa6.07□□□□□ -1.44
NUP88-209ENST00000574855 ICMTO60725 284 aa6.06□□□□□ -1.44
NUP88-209ENST00000574855 SELPP16109 830 aa6.06□□□□□ -1.44
NUP88-209ENST00000574855 DOC2BQ14184 412 aa6.06□□□□□ -1.44
NUP88-209ENST00000574855 IGF2-ASQ6U949 168 aa6.06□□□□□ -1.44
NUP88-209ENST00000574855 CEP120Q8N960 986 aa6.06□□□□□ -1.44
NUP88-209ENST00000574855 C1orf127Q8N9H9 656 aa6.06□□□□□ -1.44
NUP88-209ENST00000574855 DCAF11Q8TEB1 546 aa6.06□□□□□ -1.44
NUP88-209ENST00000574855 TRIM33Q9UPN9 1127 aa6.06□□□□□ -1.44
NUP88-209ENST00000574855 PPME1Q9Y570 386 aa6.06□□□□□ -1.44
NUP88-209ENST00000574855 A6NHS1 94 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 FZD6O60353 706 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 FURINP09958 794 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 ATP11AP98196 1134 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 ADGRE1Q14246 886 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 SHISA2Q6UWI4 295 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 MAP4K3Q8IVH8 894 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 GLYCTKQ8IVS8 523 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 PBX4Q9BYU1 374 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 RASSF4Q9H2L5 321 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 SRA1Q9HD15 236 aaKnown RBP6.05□□□□□ -1.44
NUP88-209ENST00000574855 SALL4Q9UJQ4 1053 aa6.05□□□□□ -1.44
NUP88-209ENST00000574855 FAM177BA6PVY3 158 aa6.04□□□□□ -1.44
NUP88-209ENST00000574855 K7ELQ4 463 aaPredicted RBP6.04□□□□□ -1.44
NUP88-209ENST00000574855 ADAM23O75077 832 aa6.04□□□□□ -1.44
NUP88-209ENST00000574855 DEAF1O75398 565 aaPredicted RBP6.04□□□□□ -1.44
NUP88-209ENST00000574855 TNFRSF21O75509 655 aa6.04□□□□□ -1.44
NUP88-209ENST00000574855 SERPINB4P48594 390 aa6.04□□□□□ -1.44
NUP88-209ENST00000574855 CCER1Q8TC90 406 aaPredicted RBP6.04□□□□□ -1.44
NUP88-209ENST00000574855 LACRTQ9GZZ8 138 aa6.04□□□□□ -1.44
NUP88-209ENST00000574855 CCDC87Q9NVE4 849 aa6.04□□□□□ -1.44
NUP88-209ENST00000574855 KANSL3Q9P2N6 904 aa6.04□□□□□ -1.44
NUP88-209ENST00000574855 H3BRB1 525 aa6.03□□□□□ -1.44
NUP88-209ENST00000574855 PHACTR2O75167 634 aa6.03□□□□□ -1.44
NUP88-209ENST00000574855 CDC27P30260 824 aa6.03□□□□□ -1.44
NUP88-209ENST00000574855 MBTPS1Q14703 1052 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms