RNA–Protein interactions for RNA: ENST00000574408.5

USP43-205, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 3,425 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-205ENST00000574408 METTL24Q5JXM2 366 aa12.53□□□□□ -0.4
USP43-205ENST00000574408 ZNF34Q8IZ26 560 aa12.53□□□□□ -0.4
USP43-205ENST00000574408 XAGE2Q96GT9 111 aa12.53□□□□□ -0.4
USP43-205ENST00000574408 TAF6LQ9Y6J9 622 aa12.53□□□□□ -0.4
USP43-205ENST00000574408 NCLP19338 710 aaKnown RBP12.53□□□□□ -0.4
USP43-205ENST00000574408 PSMA5P28066 241 aa12.53□□□□□ -0.4
USP43-205ENST00000574408 SLFNL1Q499Z3 407 aa12.53□□□□□ -0.4
USP43-205ENST00000574408 CCDC158Q5M9N0 1113 aa12.53□□□□□ -0.4
USP43-205ENST00000574408 TTC39AQ5SRH9 613 aa12.53□□□□□ -0.4
USP43-205ENST00000574408 CHAMP1Q96JM3 812 aa12.53□□□□□ -0.4
USP43-205ENST00000574408 CNNM1Q9NRU3 951 aa12.53□□□□□ -0.4
USP43-205ENST00000574408 NWD2Q9ULI1 1742 aa12.52□□□□□ -0.4
USP43-205ENST00000574408 PDE8AO60658 829 aa12.52□□□□□ -0.4
USP43-205ENST00000574408 NUP98P52948 1817 aa12.52□□□□□ -0.4
USP43-205ENST00000574408 JCADQ9P266 1359 aa12.52□□□□□ -0.41
USP43-205ENST00000574408 LARGE1O95461 756 aa12.52□□□□□ -0.41
USP43-205ENST00000574408 BRD1O95696 1058 aa12.52□□□□□ -0.41
USP43-205ENST00000574408 FKBP4Q02790 459 aaKnown RBP eCLIP12.52□□□□□ -0.41
USP43-205ENST00000574408 RPAP1Q9BWH6 1393 aaPredicted RBP12.52□□□□□ -0.41
USP43-205ENST00000574408 COL9A3Q14050 684 aaPredicted RBP12.52□□□□□ -0.41
USP43-205ENST00000574408 BLOC1S2Q6QNY1 142 aa12.52□□□□□ -0.41
USP43-205ENST00000574408 TCEANC2Q96MN5 208 aa12.52□□□□□ -0.41
USP43-205ENST00000574408 HMG20BQ9P0W2 317 aa12.52□□□□□ -0.41
USP43-205ENST00000574408 DDX49Q9Y6V7 483 aaKnown RBP12.52□□□□□ -0.41
USP43-205ENST00000574408 ATP2B3Q16720 1220 aa12.51□□□□□ -0.41
USP43-205ENST00000574408 SMARCC1Q92922 1105 aaPredicted RBP12.51□□□□□ -0.41
USP43-205ENST00000574408 RIPOR2Q9Y4F9 1068 aa12.51□□□□□ -0.41
USP43-205ENST00000574408 ANKRD36CQ5JPF3 1778 aa12.51□□□□□ -0.41
USP43-205ENST00000574408 SH3TC1Q8TE82 1336 aa12.51□□□□□ -0.41
USP43-205ENST00000574408 HCLS1P14317 486 aaPredicted RBP12.51□□□□□ -0.41
USP43-205ENST00000574408 CCDC83Q8IWF9 413 aa12.51□□□□□ -0.41
USP43-205ENST00000574408 RIC1Q4ADV7 1423 aa12.51□□□□□ -0.41
USP43-205ENST00000574408 SUSD4Q5VX71 490 aa12.5□□□□□ -0.41
USP43-205ENST00000574408 U3KPZ7 1027 aaPredicted RBP12.5□□□□□ -0.41
USP43-205ENST00000574408 GOLGA6L3A6NEY3 463 aa12.5□□□□□ -0.41
USP43-205ENST00000574408 USPL1Q5W0Q7 1092 aa12.5□□□□□ -0.41
USP43-205ENST00000574408 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.5□□□□□ -0.41
USP43-205ENST00000574408 TRIM44Q96DX7 344 aaPredicted RBP12.5□□□□□ -0.41
USP43-205ENST00000574408 SMC3Q9UQE7 1217 aa12.5□□□□□ -0.41
USP43-205ENST00000574408 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.5□□□□□ -0.41
USP43-205ENST00000574408 CAMTA2O94983 1202 aa12.5□□□□□ -0.41
USP43-205ENST00000574408 VPS72Q15906 364 aa12.5□□□□□ -0.41
USP43-205ENST00000574408 ZMYM1Q5SVZ6 1142 aa12.5□□□□□ -0.41
USP43-205ENST00000574408 ZSCAN31Q96LW9 406 aaPredicted RBP12.5□□□□□ -0.41
USP43-205ENST00000574408 HELLSQ9NRZ9 838 aa12.5□□□□□ -0.41
USP43-205ENST00000574408 RNF113AO15541 343 aaKnown RBP12.49□□□□□ -0.41
USP43-205ENST00000574408 SCARF1Q14162 830 aa12.49□□□□□ -0.41
USP43-205ENST00000574408 GLIPR1L2Q4G1C9 344 aa12.49□□□□□ -0.41
USP43-205ENST00000574408 UTP14AQ9BVJ6 771 aaKnown RBP12.49□□□□□ -0.41
USP43-205ENST00000574408 SH2B1Q9NRF2 756 aaPredicted RBP12.49□□□□□ -0.41
USP43-205ENST00000574408 LMBRD1Q9NUN5 540 aa12.49□□□□□ -0.41
USP43-205ENST00000574408 DTNBO60941 627 aa12.49□□□□□ -0.41
USP43-205ENST00000574408 PRPF40AO75400 957 aaKnown RBP12.49□□□□□ -0.41
USP43-205ENST00000574408 RPS6KB1P23443 525 aa12.49□□□□□ -0.41
USP43-205ENST00000574408 L1TD1Q5T7N2 865 aaKnown RBP12.49□□□□□ -0.41
USP43-205ENST00000574408 BCL9LQ86UU0 1499 aa12.49□□□□□ -0.41
USP43-205ENST00000574408 MYH14Q7Z406 1995 aaKnown RBP12.49□□□□□ -0.41
USP43-205ENST00000574408 ME3Q16798 604 aa12.49□□□□□ -0.41
USP43-205ENST00000574408 KLHL40Q2TBA0 621 aa12.49□□□□□ -0.41
USP43-205ENST00000574408 FOXD4L6Q3SYB3 417 aaPredicted RBP12.49□□□□□ -0.41
USP43-205ENST00000574408 FOXD4L3Q6VB84 417 aaPredicted RBP12.49□□□□□ -0.41
USP43-205ENST00000574408 NIP7Q9Y221 180 aaKnown RBP eCLIP12.49□□□□□ -0.41
USP43-205ENST00000574408 WDR33Q9C0J8 1336 aaKnown RBP12.48□□□□□ -0.41
USP43-205ENST00000574408 KCNQ4P56696 695 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 KRT32Q14532 448 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 TSGA10IPQ3SY00 556 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 PI16Q6UXB8 463 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 NECAB1Q8N987 351 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 TPCN1Q9ULQ1 816 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 MAST3O60307 1309 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 MYH3P11055 1940 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 CYP21A2P08686 494 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 ZAP70P43403 619 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 PKNOX2Q96KN3 472 aa12.48□□□□□ -0.41
USP43-205ENST00000574408 FSD2A1L4K1 749 aa12.47□□□□□ -0.41
USP43-205ENST00000574408 PARP10Q53GL7 1025 aa12.47□□□□□ -0.41
USP43-205ENST00000574408 HELBQ8NG08 1087 aaPredicted RBP12.47□□□□□ -0.41
USP43-205ENST00000574408 NEK1Q96PY6 1258 aa12.47□□□□□ -0.41
USP43-205ENST00000574408 PDE8BO95263 885 aa12.47□□□□□ -0.41
USP43-205ENST00000574408 ANKRD1Q15327 319 aa12.47□□□□□ -0.41
USP43-205ENST00000574408 WASHC4Q2M389 1173 aa12.47□□□□□ -0.41
USP43-205ENST00000574408 LRRFIP1Q32MZ4 808 aaKnown RBP12.47□□□□□ -0.41
USP43-205ENST00000574408 TICAM2Q86XR7 235 aa12.47□□□□□ -0.41
USP43-205ENST00000574408 VGLL2Q8N8G2 317 aa12.47□□□□□ -0.41
USP43-205ENST00000574408 PANK2Q9BZ23 570 aa12.47□□□□□ -0.41
USP43-205ENST00000574408 ST3GAL1Q11201 340 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 LINC00116Q8NCU8 138 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 AK7Q96M32 723 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 USP21Q9UK80 565 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 M0R2C6 588 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 SYT1P21579 422 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 GJB2P29033 226 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 PTF1AQ7RTS3 328 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 OSBP2Q969R2 916 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 DSCC1Q9BVC3 393 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 SEC31BQ9NQW1 1179 aa12.46□□□□□ -0.41
USP43-205ENST00000574408 STX6O43752 255 aa12.46□□□□□ -0.42
USP43-205ENST00000574408 HSPD1P10809 573 aaKnown RBP12.46□□□□□ -0.42
USP43-205ENST00000574408 MCAMP43121 646 aa12.46□□□□□ -0.42
USP43-205ENST00000574408 TOB2Q14106 344 aaPredicted RBP12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms