RNA–Protein interactions for RNA: ENST00000573852.5

SCARF1-206, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 2,698 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-206ENST00000573852 LMTK3Q96Q04 1460 aa22.48■■□□□ 1.19
SCARF1-206ENST00000573852 SMAP1Q8IYB5 467 aaPredicted RBP22.48■■□□□ 1.19
SCARF1-206ENST00000573852 HAUS7Q99871 368 aa22.48■■□□□ 1.19
SCARF1-206ENST00000573852 CEBPZQ03701 1054 aaKnown RBP22.47■■□□□ 1.19
SCARF1-206ENST00000573852 RABL6Q3YEC7 729 aaPredicted RBP22.47■■□□□ 1.19
SCARF1-206ENST00000573852 ZSCAN25Q6NSZ9 544 aa22.47■■□□□ 1.19
SCARF1-206ENST00000573852 ZSCAN16Q9H4T2 348 aaPredicted RBP22.47■■□□□ 1.19
SCARF1-206ENST00000573852 ERBB3P21860 1342 aa22.47■■□□□ 1.19
SCARF1-206ENST00000573852 ADD1P35611 737 aaKnown RBP22.47■■□□□ 1.19
SCARF1-206ENST00000573852 SMARCC2Q8TAQ2 1214 aa22.47■■□□□ 1.19
SCARF1-206ENST00000573852 PRDM4Q9UKN5 801 aa22.46■■□□□ 1.19
SCARF1-206ENST00000573852 RFX7Q2KHR2 1363 aa22.46■■□□□ 1.19
SCARF1-206ENST00000573852 SCN11AQ9UI33 1791 aa22.46■■□□□ 1.19
SCARF1-206ENST00000573852 ATP5J2-PTCD1G3V325 749 aa22.46■■□□□ 1.19
SCARF1-206ENST00000573852 PTCD1O75127 700 aaKnown RBP22.46■■□□□ 1.19
SCARF1-206ENST00000573852 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.46■■□□□ 1.19
SCARF1-206ENST00000573852 CFAP45Q9UL16 551 aa22.46■■□□□ 1.19
SCARF1-206ENST00000573852 CCDC9Q9Y3X0 531 aaKnown RBP22.46■■□□□ 1.19
SCARF1-206ENST00000573852 SLFNL1Q499Z3 407 aa22.45■■□□□ 1.19
SCARF1-206ENST00000573852 PRDM10Q9NQV6 1147 aa22.45■■□□□ 1.19
SCARF1-206ENST00000573852 FOSBP53539 338 aa22.45■■□□□ 1.18
SCARF1-206ENST00000573852 ZC3H6P61129 1189 aaKnown RBP22.45■■□□□ 1.18
SCARF1-206ENST00000573852 PPP4R3BQ5MIZ7 849 aa22.45■■□□□ 1.18
SCARF1-206ENST00000573852 RAPGEF4Q8WZA2 1011 aa22.45■■□□□ 1.18
SCARF1-206ENST00000573852 FTOQ9C0B1 505 aaKnown RBP eCLIP22.45■■□□□ 1.18
SCARF1-206ENST00000573852 CTIFO43310 598 aaKnown RBP22.44■■□□□ 1.18
SCARF1-206ENST00000573852 PFKFB2O60825 505 aa22.44■■□□□ 1.18
SCARF1-206ENST00000573852 PHKG2P15735 406 aa22.44■■□□□ 1.18
SCARF1-206ENST00000573852 NSUN7Q8NE18 718 aaKnown RBP22.44■■□□□ 1.18
SCARF1-206ENST00000573852 AFDNP55196 1824 aaKnown RBP22.44■■□□□ 1.18
SCARF1-206ENST00000573852 CTDNEP1O95476 244 aa22.44■■□□□ 1.18
SCARF1-206ENST00000573852 FGD1P98174 961 aa22.44■■□□□ 1.18
SCARF1-206ENST00000573852 CCDC144BQ3MJ40 725 aa22.44■■□□□ 1.18
SCARF1-206ENST00000573852 CCDC144CPQ8IYA2 1237 aa22.44■■□□□ 1.18
SCARF1-206ENST00000573852 LAMA4Q16363 1823 aa22.44■■□□□ 1.18
SCARF1-206ENST00000573852 CACTINQ8WUQ7 758 aaKnown RBP22.44■■□□□ 1.18
SCARF1-206ENST00000573852 CLIP2Q9UDT6 1046 aa22.44■■□□□ 1.18
SCARF1-206ENST00000573852 A0A087WZG4 1122 aa22.43■■□□□ 1.18
SCARF1-206ENST00000573852 IQCB1Q15051 598 aa22.43■■□□□ 1.18
SCARF1-206ENST00000573852 KBTBD3Q8NAB2 608 aa22.43■■□□□ 1.18
SCARF1-206ENST00000573852 C16orf45Q96MC5 204 aaPredicted RBP22.43■■□□□ 1.18
SCARF1-206ENST00000573852 LLPHQ9BRT6 129 aaKnown RBP22.43■■□□□ 1.18
SCARF1-206ENST00000573852 APOBRQ0VD83 1088 aa22.43■■□□□ 1.18
SCARF1-206ENST00000573852 ATP2B3Q16720 1220 aa22.43■■□□□ 1.18
SCARF1-206ENST00000573852 C11orf57Q6ZUT1 292 aaPredicted RBP22.43■■□□□ 1.18
SCARF1-206ENST00000573852 KRT28Q7Z3Y7 464 aa22.43■■□□□ 1.18
SCARF1-206ENST00000573852 ANKRD7Q92527 254 aa22.43■■□□□ 1.18
SCARF1-206ENST00000573852 NLRP2Q9NX02 1062 aa22.43■■□□□ 1.18
SCARF1-206ENST00000573852 SNRPA1P09661 255 aaKnown RBP22.42■■□□□ 1.18
SCARF1-206ENST00000573852 DHX32Q7L7V1 743 aaKnown RBP22.42■■□□□ 1.18
SCARF1-206ENST00000573852 GOLPH3LQ9H4A5 285 aa22.42■■□□□ 1.18
SCARF1-206ENST00000573852 RCOR1Q9UKL0 485 aa22.42■■□□□ 1.18
SCARF1-206ENST00000573852 CASP7P55210 303 aa22.42■■□□□ 1.18
SCARF1-206ENST00000573852 CCAR1Q8IX12 1150 aaKnown RBP22.42■■□□□ 1.18
SCARF1-206ENST00000573852 PDCL2Q8N4E4 241 aa22.42■■□□□ 1.18
SCARF1-206ENST00000573852 SH3TC1Q8TE82 1336 aa22.41■■□□□ 1.18
SCARF1-206ENST00000573852 NAA16Q6N069 864 aaPredicted RBP22.41■■□□□ 1.18
SCARF1-206ENST00000573852 TRPM3Q9HCF6 1732 aaPredicted RBP22.41■■□□□ 1.18
SCARF1-206ENST00000573852 A0A0G2JLW4 131 aa22.41■■□□□ 1.18
SCARF1-206ENST00000573852 PTPDC1A2A3K4 754 aa22.41■■□□□ 1.18
SCARF1-206ENST00000573852 CAVIN2O95810 425 aa22.41■■□□□ 1.18
SCARF1-206ENST00000573852 CBX1P83916 185 aa22.41■■□□□ 1.18
SCARF1-206ENST00000573852 LMBR1LQ6UX01 489 aa22.41■■□□□ 1.18
SCARF1-206ENST00000573852 MYH15Q9Y2K3 1946 aa22.4■■□□□ 1.18
SCARF1-206ENST00000573852 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.4■■□□□ 1.18
SCARF1-206ENST00000573852 CCT2P78371 535 aaKnown RBP22.4■■□□□ 1.18
SCARF1-206ENST00000573852 GOLIM4O00461 696 aa22.4■■□□□ 1.18
SCARF1-206ENST00000573852 PPFIA3O75145 1194 aa22.4■■□□□ 1.18
SCARF1-206ENST00000573852 HMGB1P09429 215 aaKnown RBP22.4■■□□□ 1.18
SCARF1-206ENST00000573852 TATP17735 454 aaPredicted RBP22.39■■□□□ 1.18
SCARF1-206ENST00000573852 CDC25BP30305 580 aa22.39■■□□□ 1.18
SCARF1-206ENST00000573852 EXOSC10Q01780 885 aaKnown RBP22.39■■□□□ 1.18
SCARF1-206ENST00000573852 SNW1Q13573 536 aaKnown RBP22.39■■□□□ 1.18
SCARF1-206ENST00000573852 USP28Q96RU2 1077 aa22.39■■□□□ 1.18
SCARF1-206ENST00000573852 NCOA5Q9HCD5 579 aaKnown RBP22.39■■□□□ 1.18
SCARF1-206ENST00000573852 TTC5Q8N0Z6 440 aa22.39■■□□□ 1.17
SCARF1-206ENST00000573852 ARFGEF2Q9Y6D5 1785 aa22.38■■□□□ 1.17
SCARF1-206ENST00000573852 A0A087WWV3 80 aa22.38■■□□□ 1.17
SCARF1-206ENST00000573852 GOLGA6L19H0YKK7 550 aa22.38■■□□□ 1.17
SCARF1-206ENST00000573852 TNNT1P13805 278 aa22.38■■□□□ 1.17
SCARF1-206ENST00000573852 NEUROD6Q96NK8 337 aa22.38■■□□□ 1.17
SCARF1-206ENST00000573852 MEGF6O75095 1541 aa22.38■■□□□ 1.17
SCARF1-206ENST00000573852 SARM1Q6SZW1 724 aa22.38■■□□□ 1.17
SCARF1-206ENST00000573852 AGXT2Q9BYV1 514 aa22.38■■□□□ 1.17
SCARF1-206ENST00000573852 PAG1Q9NWQ8 432 aa22.38■■□□□ 1.17
SCARF1-206ENST00000573852 ARID5BQ14865 1188 aa22.37■■□□□ 1.17
SCARF1-206ENST00000573852 STX1AQ16623 288 aa22.37■■□□□ 1.17
SCARF1-206ENST00000573852 ATG9AQ7Z3C6 839 aa22.37■■□□□ 1.17
SCARF1-206ENST00000573852 IFNL2Q8IZJ0 200 aa22.37■■□□□ 1.17
SCARF1-206ENST00000573852 PALLDQ8WX93 1383 aa22.37■■□□□ 1.17
SCARF1-206ENST00000573852 CTAGE5O15320 804 aa22.37■■□□□ 1.17
SCARF1-206ENST00000573852 TIMM10P62072 90 aa22.37■■□□□ 1.17
SCARF1-206ENST00000573852 FOXO4P98177 505 aa22.37■■□□□ 1.17
SCARF1-206ENST00000573852 DSCC1Q9BVC3 393 aa22.37■■□□□ 1.17
SCARF1-206ENST00000573852 HELLSQ9NRZ9 838 aa22.37■■□□□ 1.17
SCARF1-206ENST00000573852 SMTNL1A8MU46 457 aa22.36■■□□□ 1.17
SCARF1-206ENST00000573852 GUCY1B3Q02153 619 aa22.36■■□□□ 1.17
SCARF1-206ENST00000573852 ENGASEQ8NFI3 743 aa22.36■■□□□ 1.17
SCARF1-206ENST00000573852 FMNL2Q96PY5 1086 aa22.36■■□□□ 1.17
SCARF1-206ENST00000573852 SALL1Q9NSC2 1324 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms