RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 RIC1Q4ADV7 1423 aa10.41□□□□□ -0.74
VPS53-214ENST00000572607 SLX4Q8IY92 1834 aa10.4□□□□□ -0.74
VPS53-214ENST00000572607 SH3TC1Q8TE82 1336 aa10.4□□□□□ -0.74
VPS53-214ENST00000572607 CRY2Q49AN0 593 aa10.4□□□□□ -0.74
VPS53-214ENST00000572607 VARS2Q5ST30 1063 aaKnown RBP10.4□□□□□ -0.74
VPS53-214ENST00000572607 LTBP3Q9NS15 1303 aa10.39□□□□□ -0.75
VPS53-214ENST00000572607 FANCIQ9NVI1 1328 aa10.39□□□□□ -0.75
VPS53-214ENST00000572607 CC2D2BQ6DHV5 1058 aa10.39□□□□□ -0.75
VPS53-214ENST00000572607 RTKN2Q8IZC4 609 aa10.39□□□□□ -0.75
VPS53-214ENST00000572607 ADAMTSL1Q8N6G6 1762 aa10.39□□□□□ -0.75
VPS53-214ENST00000572607 NUP98P52948 1817 aa10.38□□□□□ -0.75
VPS53-214ENST00000572607 ATP5J2-PTCD1G3V325 749 aa10.38□□□□□ -0.75
VPS53-214ENST00000572607 CCER2I3L3R5 266 aa10.38□□□□□ -0.75
VPS53-214ENST00000572607 ECM2O94769 699 aaPredicted RBP10.38□□□□□ -0.75
VPS53-214ENST00000572607 HSP90B1P14625 803 aaKnown RBP10.38□□□□□ -0.75
VPS53-214ENST00000572607 VEGFAP15692 232 aaPredicted RBP10.38□□□□□ -0.75
VPS53-214ENST00000572607 HOXA10P31260 410 aaPredicted RBP10.38□□□□□ -0.75
VPS53-214ENST00000572607 SLC10A5Q5PT55 438 aa10.38□□□□□ -0.75
VPS53-214ENST00000572607 TSPYL6Q8N831 410 aa10.38□□□□□ -0.75
VPS53-214ENST00000572607 CRAMP1Q96RY5 1269 aa10.38□□□□□ -0.75
VPS53-214ENST00000572607 ISCA1Q9BUE6 129 aa10.38□□□□□ -0.75
VPS53-214ENST00000572607 MFRPQ9BY79 579 aa10.38□□□□□ -0.75
VPS53-214ENST00000572607 PHAXQ9H814 394 aaKnown RBP10.38□□□□□ -0.75
VPS53-214ENST00000572607 STK25O00506 426 aa10.37□□□□□ -0.75
VPS53-214ENST00000572607 PPEF1O14829 653 aaPredicted RBP10.37□□□□□ -0.75
VPS53-214ENST00000572607 HCLS1P14317 486 aaPredicted RBP10.37□□□□□ -0.75
VPS53-214ENST00000572607 FKBP4Q02790 459 aaKnown RBP eCLIP10.37□□□□□ -0.75
VPS53-214ENST00000572607 NEXNQ0ZGT2 675 aa10.37□□□□□ -0.75
VPS53-214ENST00000572607 GRIPAP1Q4V328 841 aa10.37□□□□□ -0.75
VPS53-214ENST00000572607 DDX46Q7L014 1031 aaKnown RBP10.37□□□□□ -0.75
VPS53-214ENST00000572607 ZNF687Q8N1G0 1237 aa10.37□□□□□ -0.75
VPS53-214ENST00000572607 MYD88Q99836 296 aa10.37□□□□□ -0.75
VPS53-214ENST00000572607 TCERG1O14776 1098 aaKnown RBP10.36□□□□□ -0.75
VPS53-214ENST00000572607 EXOSC9Q06265 439 aaKnown RBP10.36□□□□□ -0.75
VPS53-214ENST00000572607 TRIM28Q13263 835 aaKnown RBP10.36□□□□□ -0.75
VPS53-214ENST00000572607 KSR2Q6VAB6 950 aa10.36□□□□□ -0.75
VPS53-214ENST00000572607 C7orf43Q8WVR3 580 aa10.36□□□□□ -0.75
VPS53-214ENST00000572607 CWC25Q9NXE8 425 aaPredicted RBP10.36□□□□□ -0.75
VPS53-214ENST00000572607 ABCC4O15439 1325 aa10.35□□□□□ -0.75
VPS53-214ENST00000572607 SCN4AP35499 1836 aa10.35□□□□□ -0.75
VPS53-214ENST00000572607 ANKRD36CQ5JPF3 1778 aa10.35□□□□□ -0.75
VPS53-214ENST00000572607 BBOX1O75936 387 aa10.35□□□□□ -0.75
VPS53-214ENST00000572607 RTL5Q5HYW3 569 aaPredicted RBP10.35□□□□□ -0.75
VPS53-214ENST00000572607 CCDC191Q8NCU4 936 aa10.35□□□□□ -0.75
VPS53-214ENST00000572607 ZNF428Q96B54 188 aa10.35□□□□□ -0.75
VPS53-214ENST00000572607 FAM89AQ96GI7 184 aa10.35□□□□□ -0.75
VPS53-214ENST00000572607 METTL22Q9BUU2 404 aaPredicted RBP10.35□□□□□ -0.75
VPS53-214ENST00000572607 MAP3K2Q9Y2U5 619 aa10.35□□□□□ -0.75
VPS53-214ENST00000572607 PI4KAP2A4QPH2 592 aa10.34□□□□□ -0.75
VPS53-214ENST00000572607 IRS4O14654 1257 aaPredicted RBP10.34□□□□□ -0.75
VPS53-214ENST00000572607 VAMP4O75379 141 aa10.34□□□□□ -0.75
VPS53-214ENST00000572607 IARSP41252 1262 aaKnown RBP10.34□□□□□ -0.75
VPS53-214ENST00000572607 FLIIQ13045 1269 aa10.34□□□□□ -0.75
VPS53-214ENST00000572607 FKBP5Q13451 457 aaPredicted RBP10.34□□□□□ -0.75
VPS53-214ENST00000572607 GRAPQ13588 217 aa10.34□□□□□ -0.75
VPS53-214ENST00000572607 ARSIQ5FYB1 569 aa10.34□□□□□ -0.75
VPS53-214ENST00000572607 TMC4Q7Z404 712 aa10.34□□□□□ -0.75
VPS53-214ENST00000572607 SYNE4Q8N205 404 aa10.34□□□□□ -0.75
VPS53-214ENST00000572607 PI4KAP1Q8N8J0 262 aa10.34□□□□□ -0.75
VPS53-214ENST00000572607 ZBTB38Q8NAP3 1195 aaPredicted RBP10.34□□□□□ -0.75
VPS53-214ENST00000572607 GRAPLQ8TC17 118 aaPredicted RBP10.34□□□□□ -0.75
VPS53-214ENST00000572607 JDP2Q8WYK2 163 aa10.34□□□□□ -0.75
VPS53-214ENST00000572607 PSMD1Q99460 953 aa10.34□□□□□ -0.75
VPS53-214ENST00000572607 ZNF277Q9NRM2 450 aaPredicted RBP10.34□□□□□ -0.75
VPS53-214ENST00000572607 E9PSI1 815 aa10.33□□□□□ -0.76
VPS53-214ENST00000572607 FOXN1O15353 648 aa10.33□□□□□ -0.76
VPS53-214ENST00000572607 PCCAP05165 728 aaPredicted RBP10.33□□□□□ -0.76
VPS53-214ENST00000572607 OLFM4Q6UX06 510 aa10.33□□□□□ -0.76
VPS53-214ENST00000572607 SUPT20HQ8NEM7 779 aa10.33□□□□□ -0.76
VPS53-214ENST00000572607 ATP6V0A2Q9Y487 856 aa10.33□□□□□ -0.76
VPS53-214ENST00000572607 PASKQ96RG2 1323 aa10.33□□□□□ -0.76
VPS53-214ENST00000572607 CNTNAP1P78357 1384 aa10.32□□□□□ -0.76
VPS53-214ENST00000572607 SF3B3Q15393 1217 aaKnown RBP10.32□□□□□ -0.76
VPS53-214ENST00000572607 CCDC152Q4G0S7 254 aa10.32□□□□□ -0.76
VPS53-214ENST00000572607 DIEXFQ68CQ4 756 aaKnown RBP10.32□□□□□ -0.76
VPS53-214ENST00000572607 DPP8Q6V1X1 898 aaPredicted RBP10.32□□□□□ -0.76
VPS53-214ENST00000572607 G2E3Q7L622 706 aa10.32□□□□□ -0.76
VPS53-214ENST00000572607 SP8Q8IXZ3 490 aa10.32□□□□□ -0.76
VPS53-214ENST00000572607 LARGE2Q8N3Y3 721 aa10.32□□□□□ -0.76
VPS53-214ENST00000572607 MKRN1Q9UHC7 482 aaKnown RBP10.32□□□□□ -0.76
VPS53-214ENST00000572607 THSD7BQ9C0I4 1608 aa10.32□□□□□ -0.76
VPS53-214ENST00000572607 ZNF521Q96K83 1311 aa10.32□□□□□ -0.76
VPS53-214ENST00000572607 PDE8AO60658 829 aa10.31□□□□□ -0.76
VPS53-214ENST00000572607 DDNO94850 711 aaPredicted RBP10.31□□□□□ -0.76
VPS53-214ENST00000572607 EIF6P56537 245 aaKnown RBP10.31□□□□□ -0.76
VPS53-214ENST00000572607 MPNDQ8N594 471 aa10.31□□□□□ -0.76
VPS53-214ENST00000572607 DNAAF4Q8WXU2 420 aa10.31□□□□□ -0.76
VPS53-214ENST00000572607 CDHR2Q9BYE9 1310 aa10.31□□□□□ -0.76
VPS53-214ENST00000572607 LTBP1Q14766 1721 aa10.3□□□□□ -0.76
VPS53-214ENST00000572607 IQCA1LA6NCM1 817 aa10.3□□□□□ -0.76
VPS53-214ENST00000572607 NEURL1BA8MQ27 555 aa10.3□□□□□ -0.76
VPS53-214ENST00000572607 PPIP5K2O43314 1243 aa10.3□□□□□ -0.76
VPS53-214ENST00000572607 NIM1KQ8IY84 436 aa10.3□□□□□ -0.76
VPS53-214ENST00000572607 VPS33BQ9H267 617 aa10.3□□□□□ -0.76
VPS53-214ENST00000572607 SNED1Q8TER0 1413 aa10.3□□□□□ -0.76
VPS53-214ENST00000572607 COL4A5P29400 1685 aa10.29□□□□□ -0.76
VPS53-214ENST00000572607 C2orf72A6NCS6 295 aa10.29□□□□□ -0.76
VPS53-214ENST00000572607 SLC34A2O95436 690 aa10.29□□□□□ -0.76
VPS53-214ENST00000572607 ITGBL1O95965 494 aaPredicted RBP10.29□□□□□ -0.76
VPS53-214ENST00000572607 IGKV5-2P06315 115 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms