RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 FAM217BQ9NTX9 383 aaPredicted RBP8.02□□□□□ -1.13
VPS53-208ENST00000570650 ZBTB1Q9Y2K1 713 aa8.02□□□□□ -1.13
VPS53-208ENST00000570650 WDR33Q9C0J8 1336 aaKnown RBP8.02□□□□□ -1.13
VPS53-208ENST00000570650 TNNT2P45379 298 aaPredicted RBP8.01□□□□□ -1.13
VPS53-208ENST00000570650 TTLL12Q14166 644 aaPredicted RBP8.01□□□□□ -1.13
VPS53-208ENST00000570650 PUS10Q3MIT2 529 aaKnown RBP8.01□□□□□ -1.13
VPS53-208ENST00000570650 CNKSR1Q969H4 720 aa8.01□□□□□ -1.13
VPS53-208ENST00000570650 EPHX2P34913 555 aa8□□□□□ -1.13
VPS53-208ENST00000570650 FUT2Q10981 343 aa8□□□□□ -1.13
VPS53-208ENST00000570650 TBC1D9BQ66K14 1250 aa8□□□□□ -1.13
VPS53-208ENST00000570650 PRR5LQ6MZQ0 368 aa8□□□□□ -1.13
VPS53-208ENST00000570650 GIGYF2Q6Y7W6 1299 aaKnown RBP8□□□□□ -1.13
VPS53-208ENST00000570650 PARP9Q8IXQ6 854 aa8□□□□□ -1.13
VPS53-208ENST00000570650 CNTROBQ8N137 903 aa8□□□□□ -1.13
VPS53-208ENST00000570650 BEGAINQ9BUH8 593 aa8□□□□□ -1.13
VPS53-208ENST00000570650 SLC52A2Q9HAB3 445 aa8□□□□□ -1.13
VPS53-208ENST00000570650 HACL1Q9UJ83 578 aa8□□□□□ -1.13
VPS53-208ENST00000570650 ABT1Q9ULW3 272 aaKnown RBP8□□□□□ -1.13
VPS53-208ENST00000570650 ANKRD31Q8N7Z5 1873 aa8□□□□□ -1.13
VPS53-208ENST00000570650 SCN11AQ9UI33 1791 aa7.99□□□□□ -1.13
VPS53-208ENST00000570650 A0A087WZG4 1122 aa7.99□□□□□ -1.13
VPS53-208ENST00000570650 COL11A2P13942 1736 aaPredicted RBP7.99□□□□□ -1.13
VPS53-208ENST00000570650 CANXP27824 592 aaKnown RBP7.99□□□□□ -1.13
VPS53-208ENST00000570650 ECE1P42892 770 aa7.99□□□□□ -1.13
VPS53-208ENST00000570650 SLC39A6Q13433 755 aa7.99□□□□□ -1.13
VPS53-208ENST00000570650 AKAP4Q5JQC9 854 aa7.99□□□□□ -1.13
VPS53-208ENST00000570650 MAP1SQ66K74 1059 aaPredicted RBP7.99□□□□□ -1.13
VPS53-208ENST00000570650 STYK1Q6J9G0 422 aa7.99□□□□□ -1.13
VPS53-208ENST00000570650 PRPF40BQ6NWY9 871 aaKnown RBP7.99□□□□□ -1.13
VPS53-208ENST00000570650 PNMA8AQ86V59 439 aaPredicted RBP7.99□□□□□ -1.13
VPS53-208ENST00000570650 AEBP1Q8IUX7 1158 aa7.99□□□□□ -1.13
VPS53-208ENST00000570650 NKX2-3Q8TAU0 364 aa7.99□□□□□ -1.13
VPS53-208ENST00000570650 ADAMTSL1Q8N6G6 1762 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 NPHP1O15259 732 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 TLL1O43897 1013 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 SRGNP10124 158 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 SSTR3P32745 418 aaPredicted RBP7.98□□□□□ -1.13
VPS53-208ENST00000570650 EIF5P55010 431 aaKnown RBP7.98□□□□□ -1.13
VPS53-208ENST00000570650 PDE4DQ08499 809 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 CCDC93Q567U6 631 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 SULT6B1Q6IMI4 303 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 CCDC24Q8N4L8 307 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 MASTLQ96GX5 879 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 MRC1P22897 1456 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 SLX4Q8IY92 1834 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 ZNF541Q9H0D2 1346 aa7.98□□□□□ -1.13
VPS53-208ENST00000570650 THSD7BQ9C0I4 1608 aa7.97□□□□□ -1.13
VPS53-208ENST00000570650 RNMTO43148 476 aaKnown RBP7.97□□□□□ -1.13
VPS53-208ENST00000570650 STARD3NLO95772 234 aa7.97□□□□□ -1.13
VPS53-208ENST00000570650 ST5P78524 1137 aa7.97□□□□□ -1.13
VPS53-208ENST00000570650 FKBP4Q02790 459 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS53-208ENST00000570650 CNBD1Q8NA66 436 aa7.97□□□□□ -1.13
VPS53-208ENST00000570650 CAPNS2Q96L46 248 aa7.97□□□□□ -1.13
VPS53-208ENST00000570650 GPR101Q96P66 508 aaPredicted RBP7.97□□□□□ -1.13
VPS53-208ENST00000570650 LGR6Q9HBX8 967 aa7.97□□□□□ -1.13
VPS53-208ENST00000570650 DDX21Q9NR30 783 aaKnown RBP eCLIP7.97□□□□□ -1.13
VPS53-208ENST00000570650 RNF123Q5XPI4 1314 aa7.97□□□□□ -1.13
VPS53-208ENST00000570650 ARFGEF2Q9Y6D5 1785 aa7.97□□□□□ -1.13
VPS53-208ENST00000570650 MORN1Q5T089 497 aa7.96□□□□□ -1.14
VPS53-208ENST00000570650 C7orf43Q8WVR3 580 aa7.96□□□□□ -1.14
VPS53-208ENST00000570650 SETDB2Q96T68 719 aa7.96□□□□□ -1.14
VPS53-208ENST00000570650 MCOLN1Q9GZU1 580 aa7.96□□□□□ -1.14
VPS53-208ENST00000570650 ZNF277Q9NRM2 450 aaPredicted RBP7.96□□□□□ -1.14
VPS53-208ENST00000570650 CACNA1SQ13698 1873 aa7.96□□□□□ -1.14
VPS53-208ENST00000570650 SCN7AQ01118 1682 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 FZD9O00144 591 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 CA12O43570 354 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 KDM4AO75164 1064 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 MS4A1P11836 297 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 MAP2K2P36507 400 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 GRM1Q13255 1194 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 CYP4F22Q6NT55 531 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 SCUBE3Q8IX30 993 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 GPC2Q8N158 579 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 HLA-CQ95604 372 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 TBC1D2BQ9UPU7 963 aa7.95□□□□□ -1.14
VPS53-208ENST00000570650 ZNF330Q9Y3S2 320 aaPredicted RBP7.95□□□□□ -1.14
VPS53-208ENST00000570650 NR1I2O75469 434 aa7.94□□□□□ -1.14
VPS53-208ENST00000570650 NPR1P16066 1061 aa7.94□□□□□ -1.14
VPS53-208ENST00000570650 IL13P35225 146 aa7.94□□□□□ -1.14
VPS53-208ENST00000570650 IL6STP40189 918 aaPredicted RBP7.94□□□□□ -1.14
VPS53-208ENST00000570650 IARSP41252 1262 aaKnown RBP7.94□□□□□ -1.14
VPS53-208ENST00000570650 TPRNQ4KMQ1 711 aa7.94□□□□□ -1.14
VPS53-208ENST00000570650 NPM2Q86SE8 214 aaKnown RBP7.94□□□□□ -1.14
VPS53-208ENST00000570650 RTKN2Q8IZC4 609 aa7.94□□□□□ -1.14
VPS53-208ENST00000570650 TTC5Q8N0Z6 440 aa7.94□□□□□ -1.14
VPS53-208ENST00000570650 TEX13AQ9BXU3 409 aaPredicted RBP7.94□□□□□ -1.14
VPS53-208ENST00000570650 SLC27A5Q9Y2P5 690 aa7.94□□□□□ -1.14
VPS53-208ENST00000570650 TLL2Q9Y6L7 1015 aa7.94□□□□□ -1.14
VPS53-208ENST00000570650 LTBP1Q14766 1721 aa7.93□□□□□ -1.14
VPS53-208ENST00000570650 UBR2Q8IWV8 1755 aa7.93□□□□□ -1.14
VPS53-208ENST00000570650 CAMTA2O94983 1202 aa7.93□□□□□ -1.14
VPS53-208ENST00000570650 LMOD1P29536 600 aaPredicted RBP7.93□□□□□ -1.14
VPS53-208ENST00000570650 FMR1Q06787 632 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS53-208ENST00000570650 DGKZQ13574 1117 aa7.93□□□□□ -1.14
VPS53-208ENST00000570650 SYNE4Q8N205 404 aa7.93□□□□□ -1.14
VPS53-208ENST00000570650 POLR3GLQ9BT43 218 aa7.93□□□□□ -1.14
VPS53-208ENST00000570650 HEG1Q9ULI3 1381 aa7.93□□□□□ -1.14
VPS53-208ENST00000570650 PDE4DIPQ5VU43 2346 aa7.92□□□□□ -1.14
VPS53-208ENST00000570650 KLRG2A4D1S0 409 aaPredicted RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms