RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 RNMTO43148 476 aaKnown RBP17.65■□□□□ 0.42
CIITA-204ENST00000570546 KIF5BP33176 963 aa17.65■□□□□ 0.42
CIITA-204ENST00000570546 RAB34Q9BZG1 259 aa17.65■□□□□ 0.42
CIITA-204ENST00000570546 ABCC4O15439 1325 aa17.65■□□□□ 0.42
CIITA-204ENST00000570546 SBNO1A3KN83 1393 aa17.65■□□□□ 0.42
CIITA-204ENST00000570546 DHX32Q7L7V1 743 aaKnown RBP17.64■□□□□ 0.42
CIITA-204ENST00000570546 BABAM1Q9NWV8 329 aa17.64■□□□□ 0.42
CIITA-204ENST00000570546 MTIF2P46199 727 aaKnown RBP17.64■□□□□ 0.41
CIITA-204ENST00000570546 TMEM132AQ24JP5 1023 aa17.64■□□□□ 0.41
CIITA-204ENST00000570546 CHST3Q7LGC8 479 aa17.64■□□□□ 0.41
CIITA-204ENST00000570546 LUZP1Q86V48 1076 aa17.64■□□□□ 0.41
CIITA-204ENST00000570546 CDC5LQ99459 802 aaKnown RBP17.64■□□□□ 0.41
CIITA-204ENST00000570546 CNNM2Q9H8M5 875 aa17.64■□□□□ 0.41
CIITA-204ENST00000570546 NFATC2IPQ8NCF5 419 aa17.64■□□□□ 0.41
CIITA-204ENST00000570546 ZCRB1Q8TBF4 217 aaKnown RBP17.63■□□□□ 0.41
CIITA-204ENST00000570546 UBE2Q2Q8WVN8 375 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 LMBRD1Q9NUN5 540 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 MBD5Q9P267 1494 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 RPS6KB1P23443 525 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 RTN1Q16799 776 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 PNMA6EA0A0J9YXQ4 647 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 EXOC5O00471 708 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 USP19O94966 1318 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 SLC9C2Q5TAH2 1124 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 KAT14Q9H8E8 782 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 CALCOCO1Q9P1Z2 691 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 DNAI1Q9UI46 699 aa17.63■□□□□ 0.41
CIITA-204ENST00000570546 PDE4BQ07343 736 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 TSPY2A6NKD2 308 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 SLC27A2O14975 620 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 IP6K1Q92551 441 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 TCP11L1Q9NUJ3 509 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 SGSM2O43147 1006 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 HSP90AA4PQ58FG1 418 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 KRT222Q8N1A0 295 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 ZHX1Q9UKY1 873 aaPredicted RBP17.62■□□□□ 0.41
CIITA-204ENST00000570546 SLC4A4Q9Y6R1 1079 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 PPP1R12BO60237 982 aaPredicted RBP17.62■□□□□ 0.41
CIITA-204ENST00000570546 GSPT1P15170 499 aaKnown RBP17.62■□□□□ 0.41
CIITA-204ENST00000570546 AFMP43652 599 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 TMTC2Q8N394 836 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 N4BP3O15049 544 aa17.62■□□□□ 0.41
CIITA-204ENST00000570546 AMPD3Q01432 767 aa17.61■□□□□ 0.41
CIITA-204ENST00000570546 TARBP1Q13395 1621 aaKnown RBP17.61■□□□□ 0.41
CIITA-204ENST00000570546 KDM5DQ9BY66 1539 aa17.61■□□□□ 0.41
CIITA-204ENST00000570546 ZNF521Q96K83 1311 aa17.61■□□□□ 0.41
CIITA-204ENST00000570546 PAFAH1B1P43034 410 aa17.61■□□□□ 0.41
CIITA-204ENST00000570546 ZSWIM4Q9H7M6 989 aa17.61■□□□□ 0.41
CIITA-204ENST00000570546 ATP10AO60312 1499 aa17.61■□□□□ 0.41
CIITA-204ENST00000570546 SHTN1A0MZ66 631 aa17.61■□□□□ 0.41
CIITA-204ENST00000570546 GTF2F1P35269 517 aaKnown RBP eCLIP17.61■□□□□ 0.41
CIITA-204ENST00000570546 FAM114A1Q8IWE2 563 aa17.61■□□□□ 0.41
CIITA-204ENST00000570546 CALML4Q96GE6 196 aa17.61■□□□□ 0.41
CIITA-204ENST00000570546 TDRD12Q587J7 1177 aaKnown RBP17.61■□□□□ 0.41
CIITA-204ENST00000570546 RMND1Q9NWS8 449 aa17.61■□□□□ 0.41
CIITA-204ENST00000570546 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.6■□□□□ 0.41
CIITA-204ENST00000570546 UBA7P41226 1012 aa17.6■□□□□ 0.41
CIITA-204ENST00000570546 RRAGBQ5VZM2 374 aa17.6■□□□□ 0.41
CIITA-204ENST00000570546 KLHL34Q8N239 644 aa17.6■□□□□ 0.41
CIITA-204ENST00000570546 CTAGE1Q96RT6 745 aa17.6■□□□□ 0.41
CIITA-204ENST00000570546 KIAA0232Q92628 1395 aa17.6■□□□□ 0.41
CIITA-204ENST00000570546 BMP15O95972 392 aa17.6■□□□□ 0.41
CIITA-204ENST00000570546 TAX1BP1Q86VP1 789 aa17.6■□□□□ 0.41
CIITA-204ENST00000570546 ERVK-7P63135 1459 aa17.6■□□□□ 0.41
CIITA-204ENST00000570546 LMOD1P29536 600 aaPredicted RBP17.6■□□□□ 0.41
CIITA-204ENST00000570546 DDX21Q9NR30 783 aaKnown RBP eCLIP17.6■□□□□ 0.41
CIITA-204ENST00000570546 CCDC152Q4G0S7 254 aa17.6■□□□□ 0.41
CIITA-204ENST00000570546 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.6■□□□□ 0.41
CIITA-204ENST00000570546 SLU7O95391 586 aaKnown RBP17.59■□□□□ 0.41
CIITA-204ENST00000570546 CCDC96Q2M329 555 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 ESR2Q92731 530 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 ALS2CR12Q96Q35 445 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 HELLSQ9NRZ9 838 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 SBNO2Q9Y2G9 1366 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 CYP7A1P22680 504 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 BRAPQ7Z569 592 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 SAMD9LQ8IVG5 1584 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 DNA2P51530 1060 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 ENOX2Q16206 610 aaKnown RBP17.59■□□□□ 0.41
CIITA-204ENST00000570546 TUBB4AP04350 444 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 IFIT1BQ5T764 474 aaKnown RBP17.59■□□□□ 0.41
CIITA-204ENST00000570546 CRACR2BQ8N4Y2 399 aaPredicted RBP17.59■□□□□ 0.41
CIITA-204ENST00000570546 PLEKHF1Q96S99 279 aa17.59■□□□□ 0.41
CIITA-204ENST00000570546 GADD45BO75293 160 aaPredicted RBP17.58■□□□□ 0.41
CIITA-204ENST00000570546 HOXB7P09629 217 aa17.58■□□□□ 0.41
CIITA-204ENST00000570546 ATL3Q6DD88 541 aa17.58■□□□□ 0.41
CIITA-204ENST00000570546 ZMYND15Q9H091 742 aa17.58■□□□□ 0.41
CIITA-204ENST00000570546 MYO5CQ9NQX4 1742 aa17.58■□□□□ 0.41
CIITA-204ENST00000570546 VPS36Q86VN1 386 aa17.58■□□□□ 0.41
CIITA-204ENST00000570546 UBA5Q9GZZ9 404 aa17.58■□□□□ 0.41
CIITA-204ENST00000570546 KIF20AO95235 890 aa17.58■□□□□ 0.4
CIITA-204ENST00000570546 CCDC178Q5BJE1 867 aa17.58■□□□□ 0.4
CIITA-204ENST00000570546 TRIM47Q96LD4 638 aa17.58■□□□□ 0.4
CIITA-204ENST00000570546 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.58■□□□□ 0.4
CIITA-204ENST00000570546 CCDC94Q9BW85 323 aaPredicted RBP17.58■□□□□ 0.4
CIITA-204ENST00000570546 CRNKL1Q9BZJ0 848 aaKnown RBP17.58■□□□□ 0.4
CIITA-204ENST00000570546 USP8P40818 1118 aa17.58■□□□□ 0.4
CIITA-204ENST00000570546 GCP02774 474 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 HSPA4P34932 840 aa17.57■□□□□ 0.4
CIITA-204ENST00000570546 CCDC129Q6ZRS4 1044 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms