RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 USP25Q9UHP3 1055 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 ASAP1Q9ULH1 1129 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 WDR17Q8IZU2 1322 aa10.4□□□□□ -0.74
LINC00558-201ENST00000569422 ZNF335Q9H4Z2 1342 aaPredicted RBP10.4□□□□□ -0.74
LINC00558-201ENST00000569422 CYP21A2P08686 494 aa10.4□□□□□ -0.75
LINC00558-201ENST00000569422 RABL6Q3YEC7 729 aaPredicted RBP10.4□□□□□ -0.75
LINC00558-201ENST00000569422 MCMDC2Q4G0Z9 681 aa10.4□□□□□ -0.75
LINC00558-201ENST00000569422 COL15A1P39059 1388 aa10.4□□□□□ -0.75
LINC00558-201ENST00000569422 ADAMTSL3P82987 1691 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 FAM177BA6PVY3 158 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 IFIT1P09914 478 aaKnown RBP10.39□□□□□ -0.75
LINC00558-201ENST00000569422 UBE2HP62256 183 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 CCT2P78371 535 aaKnown RBP10.39□□□□□ -0.75
LINC00558-201ENST00000569422 FAM177A1Q8N128 213 aaPredicted RBP10.39□□□□□ -0.75
LINC00558-201ENST00000569422 ZNF830Q96NB3 372 aaPredicted RBP10.39□□□□□ -0.75
LINC00558-201ENST00000569422 PAG1Q9NWQ8 432 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 TMOD3Q9NYL9 352 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 A0A1B0GUL7 405 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 GOLGA6L4A6NEF3 574 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 PHF14O94880 888 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 CASP7P55210 303 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 CCDC57Q2TAC2 916 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 CCDC183Q5T5S1 534 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 ATG9AQ7Z3C6 839 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 DNAJC10Q8IXB1 793 aa10.39□□□□□ -0.75
LINC00558-201ENST00000569422 ZNF142P52746 1687 aaPredicted RBP10.39□□□□□ -0.75
LINC00558-201ENST00000569422 H7C1W4 665 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 WASHC4Q2M389 1173 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 HAUS7Q99871 368 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 HAND2P61296 217 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 TTLL5Q6EMB2 1281 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 H3BQV1 296 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 ZNF609O15014 1411 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 ADORA1P30542 326 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 IFFO2Q5TF58 517 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 RAB11FIP4Q86YS3 637 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 KBTBD3Q8NAB2 608 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 CEP126Q9P2H0 1117 aa10.38□□□□□ -0.75
LINC00558-201ENST00000569422 MED23Q9ULK4 1368 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 TRPM3Q9HCF6 1732 aaPredicted RBP10.37□□□□□ -0.75
LINC00558-201ENST00000569422 GUCY1B3Q02153 619 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 ANKRD1Q15327 319 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 PI16Q6UXB8 463 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 TTC6Q86TZ1 520 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 CKAP2LQ8IYA6 745 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 FAM184AQ8NB25 1140 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 KCNB2Q92953 911 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 EYA2O00167 538 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 KRT85P78386 507 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 APOBRQ0VD83 1088 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 STOX1Q6ZVD7 989 aa10.37□□□□□ -0.75
LINC00558-201ENST00000569422 IL15P40933 162 aaPredicted RBP10.36□□□□□ -0.75
LINC00558-201ENST00000569422 NCOA5Q9HCD5 579 aaKnown RBP10.36□□□□□ -0.75
LINC00558-201ENST00000569422 BTG4Q9NY30 223 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 TUBGCP6Q96RT7 1819 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 ERVV-2B6SEH9 535 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 KDM4AO75164 1064 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 TTC39AQ5SRH9 613 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 CCDC191Q8NCU4 936 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 HMG20BQ9P0W2 317 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 U3KPZ7 1027 aaPredicted RBP10.36□□□□□ -0.75
LINC00558-201ENST00000569422 LIG1P18858 919 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 PIGBQ92521 554 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 SPATA32Q96LK8 384 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 R3HCC1Q9Y3T6 440 aaKnown RBP10.36□□□□□ -0.75
LINC00558-201ENST00000569422 C5P01031 1676 aa10.36□□□□□ -0.75
LINC00558-201ENST00000569422 PHRF1Q9P1Y6 1649 aaKnown RBP10.35□□□□□ -0.75
LINC00558-201ENST00000569422 SETQ01105 290 aaPredicted RBP10.35□□□□□ -0.75
LINC00558-201ENST00000569422 KRT32Q14532 448 aa10.35□□□□□ -0.75
LINC00558-201ENST00000569422 KIF6Q6ZMV9 814 aa10.35□□□□□ -0.75
LINC00558-201ENST00000569422 RGS22Q8NE09 1264 aa10.35□□□□□ -0.75
LINC00558-201ENST00000569422 PDLIM2Q96JY6 352 aa10.35□□□□□ -0.75
LINC00558-201ENST00000569422 PDCP20941 246 aa10.35□□□□□ -0.75
LINC00558-201ENST00000569422 HLFQ16534 295 aa10.35□□□□□ -0.75
LINC00558-201ENST00000569422 CSPP1Q1MSJ5 1256 aa10.35□□□□□ -0.75
LINC00558-201ENST00000569422 BICD2Q8TD16 824 aa10.35□□□□□ -0.75
LINC00558-201ENST00000569422 GPHNQ9NQX3 736 aaPredicted RBP10.35□□□□□ -0.75
LINC00558-201ENST00000569422 TBC1D2BQ9UPU7 963 aa10.35□□□□□ -0.75
LINC00558-201ENST00000569422 ADCY5O95622 1261 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 SCRN1Q12765 414 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 SCARF1Q14162 830 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 CCDC158Q5M9N0 1113 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 CARD10Q9BWT7 1032 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.34□□□□□ -0.75
LINC00558-201ENST00000569422 CAMTA1Q9Y6Y1 1673 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 M0R2C6 588 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 HSPD1P10809 573 aaKnown RBP10.34□□□□□ -0.75
LINC00558-201ENST00000569422 TMEM87AQ8NBN3 555 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 SPC24Q8NBT2 197 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 XAGE2Q96GT9 111 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 FTOQ9C0B1 505 aaKnown RBP eCLIP10.34□□□□□ -0.75
LINC00558-201ENST00000569422 DACT1Q9NYF0 836 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 NOL7Q9UMY1 257 aaKnown RBP10.34□□□□□ -0.75
LINC00558-201ENST00000569422 KAT6BQ8WYB5 2073 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 IFIT5Q13325 482 aaKnown RBP10.34□□□□□ -0.75
LINC00558-201ENST00000569422 TCIRG1Q13488 830 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 DNTTIP2Q5QJE6 756 aaKnown RBP10.34□□□□□ -0.75
LINC00558-201ENST00000569422 HELBQ8NG08 1087 aaPredicted RBP10.34□□□□□ -0.75
LINC00558-201ENST00000569422 GTF3C6Q969F1 213 aa10.34□□□□□ -0.75
LINC00558-201ENST00000569422 OSBP2Q969R2 916 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms