RNA–Protein interactions for RNA: ENST00000568993.5

SNX20-204, Transcript of sorting nexin 20, humanhuman

TSL 1 (best)

Gene SNX20, Length 2,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX20-204ENST00000568993 RAB3GAP1Q15042 981 aa18.72■□□□□ 0.59
SNX20-204ENST00000568993 METTL24Q5JXM2 366 aa18.72■□□□□ 0.59
SNX20-204ENST00000568993 SEPT12Q8IYM1 358 aa18.72■□□□□ 0.59
SNX20-204ENST00000568993 NDUFB9Q9Y6M9 179 aa18.72■□□□□ 0.59
SNX20-204ENST00000568993 ATP2B3Q16720 1220 aa18.71■□□□□ 0.59
SNX20-204ENST00000568993 DDX46Q7L014 1031 aaKnown RBP18.71■□□□□ 0.59
SNX20-204ENST00000568993 TMX3Q96JJ7 454 aa18.71■□□□□ 0.59
SNX20-204ENST00000568993 CNNM1Q9NRU3 951 aa18.71■□□□□ 0.59
SNX20-204ENST00000568993 RBM8AQ9Y5S9 174 aaKnown RBP18.71■□□□□ 0.59
SNX20-204ENST00000568993 TAF1LQ8IZX4 1826 aa18.71■□□□□ 0.59
SNX20-204ENST00000568993 PDE8BO95263 885 aa18.71■□□□□ 0.59
SNX20-204ENST00000568993 CUL4AQ13619 759 aa18.71■□□□□ 0.59
SNX20-204ENST00000568993 ZNF512BQ96KM6 892 aaPredicted RBP18.71■□□□□ 0.59
SNX20-204ENST00000568993 TTC14Q96N46 770 aa18.71■□□□□ 0.59
SNX20-204ENST00000568993 MROH5Q6ZUA9 1318 aa18.7■□□□□ 0.58
SNX20-204ENST00000568993 GOLIM4O00461 696 aa18.7■□□□□ 0.58
SNX20-204ENST00000568993 TAF5LO75529 589 aa18.7■□□□□ 0.58
SNX20-204ENST00000568993 ADORA1P30542 326 aa18.7■□□□□ 0.58
SNX20-204ENST00000568993 KCNQ4P56696 695 aa18.7■□□□□ 0.58
SNX20-204ENST00000568993 CCDC152Q4G0S7 254 aa18.7■□□□□ 0.58
SNX20-204ENST00000568993 MCMDC2Q4G0Z9 681 aa18.7■□□□□ 0.58
SNX20-204ENST00000568993 FAM182BQ5T319 152 aa18.7■□□□□ 0.58
SNX20-204ENST00000568993 USPL1Q5W0Q7 1092 aa18.7■□□□□ 0.58
SNX20-204ENST00000568993 ZNF589Q86UQ0 364 aaPredicted RBP18.7■□□□□ 0.58
SNX20-204ENST00000568993 UPF3BQ9BZI7 483 aaKnown RBP18.7■□□□□ 0.58
SNX20-204ENST00000568993 NARFQ9UHQ1 456 aa18.7■□□□□ 0.58
SNX20-204ENST00000568993 CCNL1Q9UK58 526 aaPredicted RBP18.7■□□□□ 0.58
SNX20-204ENST00000568993 GORABQ5T7V8 394 aa18.69■□□□□ 0.58
SNX20-204ENST00000568993 PRPF40BQ6NWY9 871 aaKnown RBP18.69■□□□□ 0.58
SNX20-204ENST00000568993 HELLSQ9NRZ9 838 aa18.69■□□□□ 0.58
SNX20-204ENST00000568993 FOXD4L1Q9NU39 408 aa18.69■□□□□ 0.58
SNX20-204ENST00000568993 ZKSCAN1P17029 563 aaPredicted RBP18.69■□□□□ 0.58
SNX20-204ENST00000568993 TSGA10IPQ3SY00 556 aa18.69■□□□□ 0.58
SNX20-204ENST00000568993 TTC39AQ5SRH9 613 aa18.69■□□□□ 0.58
SNX20-204ENST00000568993 CREB3L3Q68CJ9 461 aa18.69■□□□□ 0.58
SNX20-204ENST00000568993 INTS4Q96HW7 963 aaKnown RBP18.69■□□□□ 0.58
SNX20-204ENST00000568993 MCM4P33991 863 aa18.68■□□□□ 0.58
SNX20-204ENST00000568993 BCL11BQ9C0K0 894 aaPredicted RBP18.68■□□□□ 0.58
SNX20-204ENST00000568993 QTRT2Q9H974 415 aaKnown RBP18.68■□□□□ 0.58
SNX20-204ENST00000568993 BCL2L12Q9HB09 334 aa18.68■□□□□ 0.58
SNX20-204ENST00000568993 ZSWIM6Q9HCJ5 1215 aa18.68■□□□□ 0.58
SNX20-204ENST00000568993 FAM177BA6PVY3 158 aa18.67■□□□□ 0.58
SNX20-204ENST00000568993 ZMYM1Q5SVZ6 1142 aa18.67■□□□□ 0.58
SNX20-204ENST00000568993 RNF20Q5VTR2 975 aa18.67■□□□□ 0.58
SNX20-204ENST00000568993 HMG20BQ9P0W2 317 aa18.67■□□□□ 0.58
SNX20-204ENST00000568993 SLC27A2O14975 620 aa18.67■□□□□ 0.58
SNX20-204ENST00000568993 FGFR2P21802 821 aa18.67■□□□□ 0.58
SNX20-204ENST00000568993 SSFA2P28290 1259 aa18.67■□□□□ 0.58
SNX20-204ENST00000568993 ARAP2Q8WZ64 1704 aa18.67■□□□□ 0.58
SNX20-204ENST00000568993 AKAP11Q9UKA4 1901 aa18.67■□□□□ 0.58
SNX20-204ENST00000568993 KCNJ4P48050 445 aa18.66■□□□□ 0.58
SNX20-204ENST00000568993 NUCB2P80303 420 aa18.66■□□□□ 0.58
SNX20-204ENST00000568993 LRRFIP1Q32MZ4 808 aaKnown RBP18.66■□□□□ 0.58
SNX20-204ENST00000568993 SLC10A5Q5PT55 438 aa18.66■□□□□ 0.58
SNX20-204ENST00000568993 CLEC17AQ6ZS10 378 aa18.66■□□□□ 0.58
SNX20-204ENST00000568993 TNPO1Q92973 898 aaKnown RBP18.66■□□□□ 0.58
SNX20-204ENST00000568993 RNF113AO15541 343 aaKnown RBP18.66■□□□□ 0.58
SNX20-204ENST00000568993 SF3B3Q15393 1217 aaKnown RBP18.66■□□□□ 0.58
SNX20-204ENST00000568993 PUM3Q15397 648 aaKnown RBP18.66■□□□□ 0.58
SNX20-204ENST00000568993 LPIN2Q92539 896 aa18.66■□□□□ 0.58
SNX20-204ENST00000568993 RTCBQ9Y3I0 505 aaKnown RBP18.66■□□□□ 0.58
SNX20-204ENST00000568993 RPAP1Q9BWH6 1393 aaPredicted RBP18.65■□□□□ 0.58
SNX20-204ENST00000568993 GNPATO15228 680 aa18.65■□□□□ 0.58
SNX20-204ENST00000568993 CYP2E1P05181 493 aaPredicted RBP18.65■□□□□ 0.58
SNX20-204ENST00000568993 CASTP20810 708 aaKnown RBP18.65■□□□□ 0.58
SNX20-204ENST00000568993 ADCK5Q3MIX3 580 aa18.65■□□□□ 0.58
SNX20-204ENST00000568993 VPS53Q5VIR6 699 aa18.65■□□□□ 0.58
SNX20-204ENST00000568993 SEC31BQ9NQW1 1179 aa18.65■□□□□ 0.58
SNX20-204ENST00000568993 COL24A1Q17RW2 1714 aa18.65■□□□□ 0.58
SNX20-204ENST00000568993 CHGBP05060 677 aa18.64■□□□□ 0.58
SNX20-204ENST00000568993 ZFYP08048 801 aaPredicted RBP18.64■□□□□ 0.58
SNX20-204ENST00000568993 PSMA5P28066 241 aa18.64■□□□□ 0.58
SNX20-204ENST00000568993 ZGPATQ8N5A5 531 aaKnown RBP18.64■□□□□ 0.58
SNX20-204ENST00000568993 JAKMIP1Q96N16 626 aaKnown RBP18.64■□□□□ 0.58
SNX20-204ENST00000568993 SEC62Q99442 399 aaKnown RBP18.64■□□□□ 0.58
SNX20-204ENST00000568993 MPHOSPH8Q99549 860 aa18.64■□□□□ 0.58
SNX20-204ENST00000568993 U3KPZ7 1027 aaPredicted RBP18.64■□□□□ 0.58
SNX20-204ENST00000568993 C4BP0C0L5 1744 aa18.64■□□□□ 0.58
SNX20-204ENST00000568993 IGHMBP2P38935 993 aaKnown RBP18.64■□□□□ 0.57
SNX20-204ENST00000568993 FKBP4Q02790 459 aaKnown RBP eCLIP18.64■□□□□ 0.57
SNX20-204ENST00000568993 SCARF1Q14162 830 aa18.64■□□□□ 0.57
SNX20-204ENST00000568993 TBC1D9BQ66K14 1250 aa18.64■□□□□ 0.57
SNX20-204ENST00000568993 RUFY3Q7L099 469 aa18.64■□□□□ 0.57
SNX20-204ENST00000568993 NYXQ9GZU5 481 aa18.64■□□□□ 0.57
SNX20-204ENST00000568993 CYP46A1Q9Y6A2 500 aa18.64■□□□□ 0.57
SNX20-204ENST00000568993 ZPR1O75312 459 aa18.63■□□□□ 0.57
SNX20-204ENST00000568993 ARID4AP29374 1257 aaPredicted RBP18.63■□□□□ 0.57
SNX20-204ENST00000568993 AK2P54819 239 aa18.63■□□□□ 0.57
SNX20-204ENST00000568993 ERFEQ4G0M1 354 aa18.63■□□□□ 0.57
SNX20-204ENST00000568993 DSCC1Q9BVC3 393 aa18.62■□□□□ 0.57
SNX20-204ENST00000568993 ALDH8A1Q9H2A2 487 aaPredicted RBP18.62■□□□□ 0.57
SNX20-204ENST00000568993 LIMCH1Q9UPQ0 1083 aa18.62■□□□□ 0.57
SNX20-204ENST00000568993 UQCRFS1P1P0C7P4 283 aa18.62■□□□□ 0.57
SNX20-204ENST00000568993 MCAMP43121 646 aa18.62■□□□□ 0.57
SNX20-204ENST00000568993 ZAP70P43403 619 aa18.62■□□□□ 0.57
SNX20-204ENST00000568993 KRT32Q14532 448 aa18.62■□□□□ 0.57
SNX20-204ENST00000568993 CCDC129Q6ZRS4 1044 aa18.62■□□□□ 0.57
SNX20-204ENST00000568993 ARHGEF1Q92888 912 aaKnown RBP18.62■□□□□ 0.57
SNX20-204ENST00000568993 GBP4Q96PP9 640 aa18.62■□□□□ 0.57
SNX20-204ENST00000568993 CDC5LQ99459 802 aaKnown RBP18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms