RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 SUSD4Q5VX71 490 aa17.85■□□□□ 0.45
CLN3-235ENST00000568497 SAMD7Q7Z3H4 446 aa17.85■□□□□ 0.45
CLN3-235ENST00000568497 JARID2Q92833 1246 aaPredicted RBP17.85■□□□□ 0.45
CLN3-235ENST00000568497 ERBB4Q15303 1308 aa17.84■□□□□ 0.45
CLN3-235ENST00000568497 TBC1D10BQ4KMP7 808 aaPredicted RBP17.84■□□□□ 0.45
CLN3-235ENST00000568497 C3orf67Q6ZVT6 689 aa17.84■□□□□ 0.45
CLN3-235ENST00000568497 DCPSQ96C86 337 aaKnown RBP17.84■□□□□ 0.45
CLN3-235ENST00000568497 DBF4Q9UBU7 674 aaPredicted RBP17.84■□□□□ 0.45
CLN3-235ENST00000568497 HOXB7P09629 217 aa17.83■□□□□ 0.44
CLN3-235ENST00000568497 SLFN5Q08AF3 891 aa17.83■□□□□ 0.44
CLN3-235ENST00000568497 KIAA2012Q0VF49 1180 aa17.83■□□□□ 0.44
CLN3-235ENST00000568497 RTL5Q5HYW3 569 aaPredicted RBP17.83■□□□□ 0.44
CLN3-235ENST00000568497 ZBTB12Q9Y330 459 aaPredicted RBP17.83■□□□□ 0.44
CLN3-235ENST00000568497 POLR2AP24928 1970 aaKnown RBP17.82■□□□□ 0.44
CLN3-235ENST00000568497 NCBP3Q53F19 620 aaKnown RBP17.82■□□□□ 0.44
CLN3-235ENST00000568497 RBM26Q5T8P6 1007 aaKnown RBP17.82■□□□□ 0.44
CLN3-235ENST00000568497 MPNDQ8N594 471 aa17.82■□□□□ 0.44
CLN3-235ENST00000568497 NLRP3Q96P20 1036 aa17.82■□□□□ 0.44
CLN3-235ENST00000568497 ABCC4O15439 1325 aa17.81■□□□□ 0.44
CLN3-235ENST00000568497 NTSR2O95665 410 aa17.81■□□□□ 0.44
CLN3-235ENST00000568497 SLC4A2P04920 1241 aa17.81■□□□□ 0.44
CLN3-235ENST00000568497 CCDC30Q5VVM6 783 aa17.81■□□□□ 0.44
CLN3-235ENST00000568497 GIGYF2Q6Y7W6 1299 aaKnown RBP17.81■□□□□ 0.44
CLN3-235ENST00000568497 ZNF34Q8IZ26 560 aa17.81■□□□□ 0.44
CLN3-235ENST00000568497 MYH16Q9H6N6 1097 aa17.81■□□□□ 0.44
CLN3-235ENST00000568497 YDJCA8MPS7 323 aa17.8■□□□□ 0.44
CLN3-235ENST00000568497 ANKRD13DQ6ZTN6 518 aa17.8■□□□□ 0.44
CLN3-235ENST00000568497 SP8Q8IXZ3 490 aa17.8■□□□□ 0.44
CLN3-235ENST00000568497 REM2Q8IYK8 340 aaPredicted RBP17.8■□□□□ 0.44
CLN3-235ENST00000568497 ZNF296Q8WUU4 475 aaPredicted RBP17.8■□□□□ 0.44
CLN3-235ENST00000568497 HYPKQ9NX55 129 aa17.8■□□□□ 0.44
CLN3-235ENST00000568497 BBOX1O75936 387 aa17.79■□□□□ 0.44
CLN3-235ENST00000568497 TBC1D8O95759 1140 aa17.79■□□□□ 0.44
CLN3-235ENST00000568497 EGFRP00533 1210 aa17.79■□□□□ 0.44
CLN3-235ENST00000568497 SLC10A5Q5PT55 438 aa17.79■□□□□ 0.44
CLN3-235ENST00000568497 PPP1R42Q7Z4L9 355 aa17.79■□□□□ 0.44
CLN3-235ENST00000568497 RIC3Q7Z5B4 369 aa17.79■□□□□ 0.44
CLN3-235ENST00000568497 RASAL3Q86YV0 1011 aa17.79■□□□□ 0.44
CLN3-235ENST00000568497 SULF1Q8IWU6 871 aa17.79■□□□□ 0.44
CLN3-235ENST00000568497 DPF2Q92785 391 aa17.79■□□□□ 0.44
CLN3-235ENST00000568497 MYD88Q99836 296 aa17.79■□□□□ 0.44
CLN3-235ENST00000568497 PSMD14O00487 310 aa17.78■□□□□ 0.44
CLN3-235ENST00000568497 FBXO46Q6PJ61 603 aaPredicted RBP17.78■□□□□ 0.44
CLN3-235ENST00000568497 PLBD2Q8NHP8 589 aa17.78■□□□□ 0.44
CLN3-235ENST00000568497 E9PSI1 815 aa17.77■□□□□ 0.44
CLN3-235ENST00000568497 F6X3S4 739 aa17.77■□□□□ 0.44
CLN3-235ENST00000568497 HCLS1P14317 486 aaPredicted RBP17.77■□□□□ 0.44
CLN3-235ENST00000568497 TCIRG1Q13488 830 aa17.77■□□□□ 0.44
CLN3-235ENST00000568497 PARP10Q53GL7 1025 aa17.77■□□□□ 0.44
CLN3-235ENST00000568497 NLRP10Q86W26 655 aa17.77■□□□□ 0.44
CLN3-235ENST00000568497 STK31Q9BXU1 1019 aa17.77■□□□□ 0.44
CLN3-235ENST00000568497 GGA3Q9NZ52 723 aa17.77■□□□□ 0.44
CLN3-235ENST00000568497 MAP3K2Q9Y2U5 619 aa17.77■□□□□ 0.44
CLN3-235ENST00000568497 PI4KAP2A4QPH2 592 aa17.76■□□□□ 0.43
CLN3-235ENST00000568497 PI4KAP1Q8N8J0 262 aa17.76■□□□□ 0.43
CLN3-235ENST00000568497 CDCA5Q96FF9 252 aa17.76■□□□□ 0.43
CLN3-235ENST00000568497 DBNDD1Q9H9R9 158 aa17.76■□□□□ 0.43
CLN3-235ENST00000568497 FXR1P51114 621 aaKnown RBP eCLIP17.75■□□□□ 0.43
CLN3-235ENST00000568497 KIF4BQ2VIQ3 1234 aa17.75■□□□□ 0.43
CLN3-235ENST00000568497 ANKRD36CQ5JPF3 1778 aa17.75■□□□□ 0.43
CLN3-235ENST00000568497 FLIIQ13045 1269 aa17.74■□□□□ 0.43
CLN3-235ENST00000568497 CWF19L2Q2TBE0 894 aaKnown RBP17.74■□□□□ 0.43
CLN3-235ENST00000568497 TRMT2AQ8IZ69 625 aaKnown RBP17.74■□□□□ 0.43
CLN3-235ENST00000568497 FAM89AQ96GI7 184 aa17.74■□□□□ 0.43
CLN3-235ENST00000568497 ISCA1Q9BUE6 129 aa17.74■□□□□ 0.43
CLN3-235ENST00000568497 UTP14AQ9BVJ6 771 aaKnown RBP17.74■□□□□ 0.43
CLN3-235ENST00000568497 RPS12P25398 132 aaKnown RBP17.73■□□□□ 0.43
CLN3-235ENST00000568497 FKBP5Q13451 457 aaPredicted RBP17.73■□□□□ 0.43
CLN3-235ENST00000568497 DDX46Q7L014 1031 aaKnown RBP17.73■□□□□ 0.43
CLN3-235ENST00000568497 SSH1Q8WYL5 1049 aa17.73■□□□□ 0.43
CLN3-235ENST00000568497 TRMT112Q9UI30 125 aaKnown RBP17.73■□□□□ 0.43
CLN3-235ENST00000568497 LAMB2P55268 1798 aa17.72■□□□□ 0.43
CLN3-235ENST00000568497 DUOX1Q9NRD9 1551 aa17.72■□□□□ 0.43
CLN3-235ENST00000568497 GPR25O00155 361 aa17.72■□□□□ 0.43
CLN3-235ENST00000568497 RIMBP2O15034 1052 aa17.72■□□□□ 0.43
CLN3-235ENST00000568497 IGKV5-2P06315 115 aa17.72■□□□□ 0.43
CLN3-235ENST00000568497 WASHC4Q2M389 1173 aa17.72■□□□□ 0.43
CLN3-235ENST00000568497 MRPL50Q8N5N7 158 aaKnown RBP17.72■□□□□ 0.43
CLN3-235ENST00000568497 CCDC85AQ96PX6 553 aaPredicted RBP17.72■□□□□ 0.43
CLN3-235ENST00000568497 ASTN2O75129 1339 aaPredicted RBP17.72■□□□□ 0.43
CLN3-235ENST00000568497 KSR2Q6VAB6 950 aa17.71■□□□□ 0.43
CLN3-235ENST00000568497 TMC4Q7Z404 712 aa17.71■□□□□ 0.43
CLN3-235ENST00000568497 METTL22Q9BUU2 404 aaPredicted RBP17.71■□□□□ 0.43
CLN3-235ENST00000568497 TAF1P21675 1872 aa17.71■□□□□ 0.43
CLN3-235ENST00000568497 PAPPA2Q9BXP8 1791 aa17.71■□□□□ 0.43
CLN3-235ENST00000568497 FKTNO75072 461 aa17.7■□□□□ 0.42
CLN3-235ENST00000568497 GRAPQ13588 217 aa17.7■□□□□ 0.42
CLN3-235ENST00000568497 HSP90AB3PQ58FF7 597 aa17.7■□□□□ 0.42
CLN3-235ENST00000568497 GRAPLQ8TC17 118 aaPredicted RBP17.7■□□□□ 0.42
CLN3-235ENST00000568497 YTHDC1Q96MU7 727 aaKnown RBP17.7■□□□□ 0.42
CLN3-235ENST00000568497 COL4A1P02462 1669 aa17.7■□□□□ 0.42
CLN3-235ENST00000568497 POTEFA5A3E0 1075 aa17.69■□□□□ 0.42
CLN3-235ENST00000568497 C6orf229H3BNL8 230 aa17.69■□□□□ 0.42
CLN3-235ENST00000568497 ECE2O60344 883 aa17.69■□□□□ 0.42
CLN3-235ENST00000568497 FKBP1BP68106 108 aa17.69■□□□□ 0.42
CLN3-235ENST00000568497 MKRN3Q13064 507 aaKnown RBP17.69■□□□□ 0.42
CLN3-235ENST00000568497 NOM1Q5C9Z4 860 aaKnown RBP17.69■□□□□ 0.42
CLN3-235ENST00000568497 ANGEL2Q5VTE6 544 aaKnown RBP17.69■□□□□ 0.42
CLN3-235ENST00000568497 NSFL1CQ9UNZ2 370 aaKnown RBP17.69■□□□□ 0.42
CLN3-235ENST00000568497 TNNQ9UQP3 1299 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms