RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 ANGEL2Q5VTE6 544 aaKnown RBP15.62■□□□□ 0.09
CLK3-222ENST00000568232 POLLQ9UGP5 575 aa15.62■□□□□ 0.09
CLK3-222ENST00000568232 NSFL1CQ9UNZ2 370 aaKnown RBP15.62■□□□□ 0.09
CLK3-222ENST00000568232 POTEFA5A3E0 1075 aa15.61■□□□□ 0.09
CLK3-222ENST00000568232 UBE2Q2LH0YL09 131 aa15.61■□□□□ 0.09
CLK3-222ENST00000568232 C6orf229H3BNL8 230 aa15.61■□□□□ 0.09
CLK3-222ENST00000568232 ANXA1P04083 346 aa15.61■□□□□ 0.09
CLK3-222ENST00000568232 LRP10Q7Z4F1 713 aa15.61■□□□□ 0.09
CLK3-222ENST00000568232 CFAP53Q96M91 514 aa15.61■□□□□ 0.09
CLK3-222ENST00000568232 R3HDMLQ9H3Y0 253 aa15.61■□□□□ 0.09
CLK3-222ENST00000568232 NUDCQ9Y266 331 aa15.61■□□□□ 0.09
CLK3-222ENST00000568232 CENPFP49454 3210 aa15.61■□□□□ 0.09
CLK3-222ENST00000568232 TAF1P21675 1872 aa15.61■□□□□ 0.09
CLK3-222ENST00000568232 LAMB2P55268 1798 aa15.6■□□□□ 0.09
CLK3-222ENST00000568232 GPSM2P81274 684 aa15.6■□□□□ 0.09
CLK3-222ENST00000568232 MKRN3Q13064 507 aaKnown RBP15.6■□□□□ 0.09
CLK3-222ENST00000568232 SCARF1Q14162 830 aa15.6■□□□□ 0.09
CLK3-222ENST00000568232 PROSER3Q2NL68 480 aa15.6■□□□□ 0.09
CLK3-222ENST00000568232 NLRP10Q86W26 655 aa15.6■□□□□ 0.09
CLK3-222ENST00000568232 TRMT112Q9UI30 125 aaKnown RBP15.6■□□□□ 0.09
CLK3-222ENST00000568232 TM4SF4P48230 202 aa15.59■□□□□ 0.09
CLK3-222ENST00000568232 PDIA6Q15084 440 aa15.59■□□□□ 0.09
CLK3-222ENST00000568232 PRAMEF18Q5VWM3 479 aa15.59■□□□□ 0.09
CLK3-222ENST00000568232 PNISRQ8TF01 805 aaKnown RBP15.59■□□□□ 0.09
CLK3-222ENST00000568232 CELF1Q92879 486 aaKnown RBP15.59■□□□□ 0.09
CLK3-222ENST00000568232 BRCA2P51587 3418 aa15.58■□□□□ 0.09
CLK3-222ENST00000568232 VIL1P09327 827 aaKnown RBP15.58■□□□□ 0.08
CLK3-222ENST00000568232 EIF2S2P20042 333 aaKnown RBP15.58■□□□□ 0.08
CLK3-222ENST00000568232 FKBP1BP68106 108 aa15.58■□□□□ 0.08
CLK3-222ENST00000568232 TMC4Q7Z404 712 aa15.58■□□□□ 0.08
CLK3-222ENST00000568232 ANKRD36CQ5JPF3 1778 aa15.57■□□□□ 0.08
CLK3-222ENST00000568232 KDM3BQ7LBC6 1761 aa15.57■□□□□ 0.08
CLK3-222ENST00000568232 FKTNO75072 461 aa15.57■□□□□ 0.08
CLK3-222ENST00000568232 COL4A1P02462 1669 aa15.57■□□□□ 0.08
CLK3-222ENST00000568232 SZT2Q5T011 3432 aa15.56■□□□□ 0.08
CLK3-222ENST00000568232 ZNF280AP59817 542 aaPredicted RBP15.56■□□□□ 0.08
CLK3-222ENST00000568232 AIMP1Q12904 312 aaKnown RBP15.56■□□□□ 0.08
CLK3-222ENST00000568232 NOM1Q5C9Z4 860 aaKnown RBP15.56■□□□□ 0.08
CLK3-222ENST00000568232 TBC1D16Q8TBP0 767 aa15.56■□□□□ 0.08
CLK3-222ENST00000568232 ERBB4Q15303 1308 aa15.56■□□□□ 0.08
CLK3-222ENST00000568232 SH3TC1Q8TE82 1336 aa15.56■□□□□ 0.08
CLK3-222ENST00000568232 LRRC37AA6NMS7 1700 aa15.56■□□□□ 0.08
CLK3-222ENST00000568232 PAPPA2Q9BXP8 1791 aa15.55■□□□□ 0.08
CLK3-222ENST00000568232 SPDYE2BA6NHP3 402 aa15.55■□□□□ 0.08
CLK3-222ENST00000568232 PITPNM1O00562 1244 aa15.55■□□□□ 0.08
CLK3-222ENST00000568232 SPDYE6P0CI01 402 aa15.55■□□□□ 0.08
CLK3-222ENST00000568232 SPDYE2Q495Y8 402 aa15.55■□□□□ 0.08
CLK3-222ENST00000568232 COPS6Q7L5N1 327 aa15.55■□□□□ 0.08
CLK3-222ENST00000568232 EYA3Q99504 573 aa15.55■□□□□ 0.08
CLK3-222ENST00000568232 PCGF6Q9BYE7 350 aa15.55■□□□□ 0.08
CLK3-222ENST00000568232 TCIRG1Q13488 830 aa15.54■□□□□ 0.08
CLK3-222ENST00000568232 TTLL12Q14166 644 aaPredicted RBP15.54■□□□□ 0.08
CLK3-222ENST00000568232 NECTIN2Q92692 538 aa15.54■□□□□ 0.08
CLK3-222ENST00000568232 COLQQ9Y215 455 aaPredicted RBP15.54■□□□□ 0.08
CLK3-222ENST00000568232 TRIM17Q9Y577 477 aa15.54■□□□□ 0.08
CLK3-222ENST00000568232 EN2P19622 333 aaPredicted RBP15.53■□□□□ 0.08
CLK3-222ENST00000568232 HSP90AB3PQ58FF7 597 aa15.53■□□□□ 0.08
CLK3-222ENST00000568232 RSBN1LQ6PCB5 846 aaPredicted RBP15.53■□□□□ 0.08
CLK3-222ENST00000568232 XAGE3Q8WTP9 111 aa15.53■□□□□ 0.08
CLK3-222ENST00000568232 ZC3H12CQ9C0D7 883 aaKnown RBP15.53■□□□□ 0.08
CLK3-222ENST00000568232 MYOZ2Q9NPC6 264 aa15.53■□□□□ 0.08
CLK3-222ENST00000568232 SCN9AQ15858 1988 aa15.53■□□□□ 0.08
CLK3-222ENST00000568232 G3V3G9 751 aa15.52■□□□□ 0.08
CLK3-222ENST00000568232 DCAF8Q5TAQ9 597 aa15.52■□□□□ 0.08
CLK3-222ENST00000568232 FAM89AQ96GI7 184 aa15.52■□□□□ 0.08
CLK3-222ENST00000568232 CFHR5Q9BXR6 569 aa15.52■□□□□ 0.08
CLK3-222ENST00000568232 PITPNM2Q9BZ72 1349 aa15.51■□□□□ 0.07
CLK3-222ENST00000568232 CLSPNQ9HAW4 1339 aa15.51■□□□□ 0.07
CLK3-222ENST00000568232 PPP2R1AP30153 589 aa15.51■□□□□ 0.07
CLK3-222ENST00000568232 PTPN12Q05209 780 aaKnown RBP15.51■□□□□ 0.07
CLK3-222ENST00000568232 SREBF2Q12772 1141 aa15.51■□□□□ 0.07
CLK3-222ENST00000568232 PRKG1Q13976 671 aa15.51■□□□□ 0.07
CLK3-222ENST00000568232 SF3B3Q15393 1217 aaKnown RBP15.51■□□□□ 0.07
CLK3-222ENST00000568232 NBPF9Q3BBW0 867 aa15.51■□□□□ 0.07
CLK3-222ENST00000568232 RTL5Q5HYW3 569 aaPredicted RBP15.51■□□□□ 0.07
CLK3-222ENST00000568232 INTS3Q68E01 1043 aaKnown RBP15.51■□□□□ 0.07
CLK3-222ENST00000568232 OTOP1Q7RTM1 612 aa15.51■□□□□ 0.07
CLK3-222ENST00000568232 AGBL3Q8NEM8 1001 aa15.51■□□□□ 0.07
CLK3-222ENST00000568232 GMLQ99445 158 aa15.51■□□□□ 0.07
CLK3-222ENST00000568232 USP17L8P0C7I0 530 aa15.5■□□□□ 0.07
CLK3-222ENST00000568232 TSPYL4Q9UJ04 414 aa15.5■□□□□ 0.07
CLK3-222ENST00000568232 UFL1O94874 794 aa15.49■□□□□ 0.07
CLK3-222ENST00000568232 RPS8P62241 208 aaKnown RBP15.49■□□□□ 0.07
CLK3-222ENST00000568232 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.49■□□□□ 0.07
CLK3-222ENST00000568232 TRIM26Q12899 539 aaPredicted RBP15.48■□□□□ 0.07
CLK3-222ENST00000568232 ANKIB1Q9P2G1 1089 aa15.48■□□□□ 0.07
CLK3-222ENST00000568232 FZD1Q9UP38 647 aa15.48■□□□□ 0.07
CLK3-222ENST00000568232 DDX60Q8IY21 1712 aaKnown RBP15.48■□□□□ 0.07
CLK3-222ENST00000568232 DLG5Q8TDM6 1919 aa15.47■□□□□ 0.07
CLK3-222ENST00000568232 ATP5J2-PTCD1G3V325 749 aa15.47■□□□□ 0.07
CLK3-222ENST00000568232 NFE2L2Q16236 605 aa15.47■□□□□ 0.07
CLK3-222ENST00000568232 SPRYD7Q5W111 196 aa15.47■□□□□ 0.07
CLK3-222ENST00000568232 PIP4P2Q8N4L2 257 aa15.47■□□□□ 0.07
CLK3-222ENST00000568232 PLEKHF1Q96S99 279 aa15.47■□□□□ 0.07
CLK3-222ENST00000568232 MXD3Q9BW11 206 aa15.47■□□□□ 0.07
CLK3-222ENST00000568232 SEC31BQ9NQW1 1179 aa15.47■□□□□ 0.07
CLK3-222ENST00000568232 PODXL2Q9NZ53 605 aa15.47■□□□□ 0.07
CLK3-222ENST00000568232 PTPN22Q9Y2R2 807 aa15.47■□□□□ 0.07
CLK3-222ENST00000568232 ZNF609O15014 1411 aa15.46■□□□□ 0.07
CLK3-222ENST00000568232 NEFMP07197 916 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms