RNA–Protein interactions for RNA: ENST00000565452.1

VPS9D1-205, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 178 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-205ENST00000565452 A0A0C4DFX4 3053 aa12□□□□□ -0.49
VPS9D1-205ENST00000565452 MKI67P46013 3256 aaKnown RBP12□□□□□ -0.49
VPS9D1-205ENST00000565452 ARMC9Q7Z3E5 817 aa12□□□□□ -0.49
VPS9D1-205ENST00000565452 EFCC1Q9HA90 598 aa12□□□□□ -0.49
VPS9D1-205ENST00000565452 POLLQ9UGP5 575 aa12□□□□□ -0.49
VPS9D1-205ENST00000565452 TRMT112Q9UI30 125 aaKnown RBP12□□□□□ -0.49
VPS9D1-205ENST00000565452 MANSC4A6NHS7 340 aaPredicted RBP11.99□□□□□ -0.49
VPS9D1-205ENST00000565452 USP17L8P0C7I0 530 aa11.99□□□□□ -0.49
VPS9D1-205ENST00000565452 HSPA5P11021 654 aaKnown RBP11.99□□□□□ -0.49
VPS9D1-205ENST00000565452 DCTN1Q14203 1278 aa11.99□□□□□ -0.49
VPS9D1-205ENST00000565452 ARHGEF6Q15052 776 aa11.99□□□□□ -0.49
VPS9D1-205ENST00000565452 HSP90AB3PQ58FF7 597 aa11.99□□□□□ -0.49
VPS9D1-205ENST00000565452 PRAMEF18Q5VWM3 479 aa11.99□□□□□ -0.49
VPS9D1-205ENST00000565452 MYOZ2Q9NPC6 264 aa11.99□□□□□ -0.49
VPS9D1-205ENST00000565452 NUDCQ9Y266 331 aa11.99□□□□□ -0.49
VPS9D1-205ENST00000565452 RTL9Q8NET4 1388 aa11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 MNX1P50219 401 aaPredicted RBP11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 GPSM2P81274 684 aa11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 PTPN12Q05209 780 aaKnown RBP11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 SLC4A8Q2Y0W8 1093 aa11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 CC2D1BQ5T0F9 858 aaKnown RBP11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 SPRYD7Q5W111 196 aa11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 OTUD7BQ6GQQ9 843 aa11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 RSBN1LQ6PCB5 846 aaPredicted RBP11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 CHRDL2Q6WN34 429 aa11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 IFNL1Q8IU54 200 aa11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 SLC10A4Q96EP9 437 aa11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 RSPH6AQ9H0K4 717 aa11.98□□□□□ -0.49
VPS9D1-205ENST00000565452 ERBB4Q15303 1308 aa11.97□□□□□ -0.49
VPS9D1-205ENST00000565452 SH3TC1Q8TE82 1336 aa11.97□□□□□ -0.49
VPS9D1-205ENST00000565452 NLRP10Q86W26 655 aa11.97□□□□□ -0.49
VPS9D1-205ENST00000565452 TBC1D16Q8TBP0 767 aa11.97□□□□□ -0.49
VPS9D1-205ENST00000565452 RBM27Q9P2N5 1060 aaKnown RBP11.97□□□□□ -0.49
VPS9D1-205ENST00000565452 POLR2AP24928 1970 aaKnown RBP11.97□□□□□ -0.49
VPS9D1-205ENST00000565452 TRIOBPQ9H2D6 2365 aa11.97□□□□□ -0.49
VPS9D1-205ENST00000565452 KIAA0100Q14667 2235 aaKnown RBP11.96□□□□□ -0.49
VPS9D1-205ENST00000565452 EIF4A1P60842 406 aaKnown RBP11.96□□□□□ -0.49
VPS9D1-205ENST00000565452 CD99L2Q8TCZ2 262 aa11.96□□□□□ -0.49
VPS9D1-205ENST00000565452 DPF3Q92784 378 aa11.96□□□□□ -0.49
VPS9D1-205ENST00000565452 CFAP53Q96M91 514 aa11.96□□□□□ -0.49
VPS9D1-205ENST00000565452 SCAF8Q9UPN6 1271 aaKnown RBP11.96□□□□□ -0.49
VPS9D1-205ENST00000565452 RPS8P62241 208 aaKnown RBP11.95□□□□□ -0.5
VPS9D1-205ENST00000565452 SP3Q02447 781 aa11.95□□□□□ -0.5
VPS9D1-205ENST00000565452 LDLRAD1Q5T700 205 aa11.95□□□□□ -0.5
VPS9D1-205ENST00000565452 OGFOD1Q8N543 542 aa11.95□□□□□ -0.5
VPS9D1-205ENST00000565452 ZNF333Q96JL9 665 aa11.95□□□□□ -0.5
VPS9D1-205ENST00000565452 SZT2Q5T011 3432 aa11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 PER1O15534 1290 aaPredicted RBP11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 U2AF1L5P0DN76 240 aaPredicted RBP11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 U2AF1Q01081 240 aaKnown RBP eCLIP11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 PRKG1Q13976 671 aa11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 SF3B3Q15393 1217 aaKnown RBP11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 NBPF9Q3BBW0 867 aa11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 SLC9C1Q4G0N8 1177 aa11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 CELF1Q92879 486 aaKnown RBP11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 GMLQ99445 158 aa11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 ANKIB1Q9P2G1 1089 aa11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 SIPA1L3O60292 1781 aaPredicted RBP11.94□□□□□ -0.5
VPS9D1-205ENST00000565452 USP17L3A6NCW0 530 aa11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 USP17L4A6NCW7 530 aa11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 ZBTB48P10074 688 aaPredicted RBP11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 MMP14P50281 582 aa11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 USP17L1Q7RTZ2 530 aa11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 PODNQ7Z5L7 613 aa11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 THUMPD2Q9BTF0 503 aaKnown RBP11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 PODXL2Q9NZ53 605 aa11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 GGA1Q9UJY5 639 aa11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 ANGEL1Q9UNK9 670 aaKnown RBP11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 CUL9Q8IWT3 2517 aa11.93□□□□□ -0.5
VPS9D1-205ENST00000565452 PAPPA2Q9BXP8 1791 aa11.92□□□□□ -0.5
VPS9D1-205ENST00000565452 UNCXA6NJT0 531 aa11.92□□□□□ -0.5
VPS9D1-205ENST00000565452 UFL1O94874 794 aa11.92□□□□□ -0.5
VPS9D1-205ENST00000565452 NEFMP07197 916 aa11.92□□□□□ -0.5
VPS9D1-205ENST00000565452 EIF2S2P20042 333 aaKnown RBP11.92□□□□□ -0.5
VPS9D1-205ENST00000565452 CNGB1Q14028 1251 aaPredicted RBP11.92□□□□□ -0.5
VPS9D1-205ENST00000565452 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.92□□□□□ -0.5
VPS9D1-205ENST00000565452 CEP290O15078 2479 aa11.92□□□□□ -0.5
VPS9D1-205ENST00000565452 IGF2BP3O00425 579 aaKnown RBP eCLIP11.91□□□□□ -0.5
VPS9D1-205ENST00000565452 AIMP1Q12904 312 aaKnown RBP11.91□□□□□ -0.5
VPS9D1-205ENST00000565452 CRHR2Q13324 411 aa11.91□□□□□ -0.5
VPS9D1-205ENST00000565452 PDIA6Q15084 440 aa11.91□□□□□ -0.5
VPS9D1-205ENST00000565452 ANKRD13DQ6ZTN6 518 aa11.91□□□□□ -0.5
VPS9D1-205ENST00000565452 COPS6Q7L5N1 327 aa11.91□□□□□ -0.5
VPS9D1-205ENST00000565452 NR2E3Q9Y5X4 410 aa11.91□□□□□ -0.5
VPS9D1-205ENST00000565452 WTIPA6NIX2 430 aaPredicted RBP11.9□□□□□ -0.5
VPS9D1-205ENST00000565452 WNT10BO00744 389 aa11.9□□□□□ -0.5
VPS9D1-205ENST00000565452 PPP1R12BO60237 982 aaPredicted RBP11.9□□□□□ -0.5
VPS9D1-205ENST00000565452 LRP10Q7Z4F1 713 aa11.9□□□□□ -0.5
VPS9D1-205ENST00000565452 APOBEC3FQ8IUX4 373 aaKnown RBP11.9□□□□□ -0.5
VPS9D1-205ENST00000565452 NUP98P52948 1817 aa11.9□□□□□ -0.5
VPS9D1-205ENST00000565452 A0A1W2PPC1 479 aa11.89□□□□□ -0.51
VPS9D1-205ENST00000565452 FAM89AQ96GI7 184 aa11.89□□□□□ -0.51
VPS9D1-205ENST00000565452 WNK4Q96J92 1243 aa11.89□□□□□ -0.51
VPS9D1-205ENST00000565452 HTATIP2Q9BUP3 242 aa11.89□□□□□ -0.51
VPS9D1-205ENST00000565452 ZNF609O15014 1411 aa11.88□□□□□ -0.51
VPS9D1-205ENST00000565452 MYCP01106 439 aaPredicted RBP11.88□□□□□ -0.51
VPS9D1-205ENST00000565452 HSP90B1P14625 803 aaKnown RBP11.88□□□□□ -0.51
VPS9D1-205ENST00000565452 MAP3K11Q16584 847 aa11.88□□□□□ -0.51
VPS9D1-205ENST00000565452 NKX2-3Q8TAU0 364 aa11.88□□□□□ -0.51
VPS9D1-205ENST00000565452 XAGE3Q8WTP9 111 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms