RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TNNT1P13805 278 aa15.56■□□□□ 0.08
CLN3-210ENST00000563874 SCRN1Q12765 414 aa15.56■□□□□ 0.08
CLN3-210ENST00000563874 C11orf57Q6ZUT1 292 aaPredicted RBP15.56■□□□□ 0.08
CLN3-210ENST00000563874 ZNF592Q92610 1267 aa15.56■□□□□ 0.08
CLN3-210ENST00000563874 DBNDD2Q9BQY9 259 aa15.56■□□□□ 0.08
CLN3-210ENST00000563874 TSGA10IPQ3SY00 556 aa15.55■□□□□ 0.08
CLN3-210ENST00000563874 TNNI3KQ59H18 835 aa15.55■□□□□ 0.08
CLN3-210ENST00000563874 ALDH8A1Q9H2A2 487 aaPredicted RBP15.55■□□□□ 0.08
CLN3-210ENST00000563874 FPGT-TNNI3KV9GXZ4 949 aa15.55■□□□□ 0.08
CLN3-210ENST00000563874 CTIFO43310 598 aaKnown RBP15.55■□□□□ 0.08
CLN3-210ENST00000563874 CCT2P78371 535 aaKnown RBP15.55■□□□□ 0.08
CLN3-210ENST00000563874 GUCY1B3Q02153 619 aa15.55■□□□□ 0.08
CLN3-210ENST00000563874 TPD52L1Q16890 204 aaPredicted RBP15.55■□□□□ 0.08
CLN3-210ENST00000563874 USPL1Q5W0Q7 1092 aa15.55■□□□□ 0.08
CLN3-210ENST00000563874 UBE3BQ7Z3V4 1068 aa15.55■□□□□ 0.08
CLN3-210ENST00000563874 ATP5J2-PTCD1G3V325 749 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 PTCD1O75127 700 aaKnown RBP15.54■□□□□ 0.08
CLN3-210ENST00000563874 KRT32Q14532 448 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 STOX1Q6ZVD7 989 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 ANKRD7Q92527 254 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 ZNF609O15014 1411 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 GOLGA6L19H0YKK7 550 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 IGSF3O75054 1194 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 NCBP1Q09161 790 aaKnown RBP15.54■□□□□ 0.08
CLN3-210ENST00000563874 ZNF790Q6PG37 636 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 ARHGEF25Q86VW2 580 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 ORAI2Q96SN7 254 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 A0A0G2JLW4 131 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 ATP5JP18859 108 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 PTPN12Q05209 780 aaKnown RBP15.54■□□□□ 0.08
CLN3-210ENST00000563874 GOLPH3LQ9H4A5 285 aa15.54■□□□□ 0.08
CLN3-210ENST00000563874 NCOA5Q9HCD5 579 aaKnown RBP15.54■□□□□ 0.08
CLN3-210ENST00000563874 DMTNQ08495 405 aa15.53■□□□□ 0.08
CLN3-210ENST00000563874 APOBRQ0VD83 1088 aa15.53■□□□□ 0.08
CLN3-210ENST00000563874 CCAR1Q8IX12 1150 aaKnown RBP15.53■□□□□ 0.08
CLN3-210ENST00000563874 NFATC2IPQ8NCF5 419 aa15.53■□□□□ 0.08
CLN3-210ENST00000563874 CFAP45Q9UL16 551 aa15.53■□□□□ 0.08
CLN3-210ENST00000563874 USP16Q9Y5T5 823 aa15.53■□□□□ 0.08
CLN3-210ENST00000563874 SAMD1Q6SPF0 538 aaPredicted RBP15.53■□□□□ 0.08
CLN3-210ENST00000563874 CHST3Q7LGC8 479 aa15.53■□□□□ 0.08
CLN3-210ENST00000563874 JCADQ9P266 1359 aa15.53■□□□□ 0.08
CLN3-210ENST00000563874 USP27XA6NNY8 438 aa15.52■□□□□ 0.08
CLN3-210ENST00000563874 FILIP1Q7Z7B0 1213 aa15.52■□□□□ 0.08
CLN3-210ENST00000563874 CHD2O14647 1828 aaKnown RBP15.52■□□□□ 0.08
CLN3-210ENST00000563874 IQCB1Q15051 598 aa15.52■□□□□ 0.08
CLN3-210ENST00000563874 MCMDC2Q4G0Z9 681 aa15.52■□□□□ 0.08
CLN3-210ENST00000563874 METTL22Q9BUU2 404 aaPredicted RBP15.52■□□□□ 0.08
CLN3-210ENST00000563874 U3KPZ7 1027 aaPredicted RBP15.52■□□□□ 0.08
CLN3-210ENST00000563874 LMO7Q8WWI1 1683 aa15.52■□□□□ 0.07
CLN3-210ENST00000563874 ADGRL3Q9HAR2 1447 aa15.52■□□□□ 0.07
CLN3-210ENST00000563874 ADD1P35611 737 aaKnown RBP15.52■□□□□ 0.07
CLN3-210ENST00000563874 ANKRD13DQ6ZTN6 518 aa15.52■□□□□ 0.07
CLN3-210ENST00000563874 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.52■□□□□ 0.07
CLN3-210ENST00000563874 ZNF496Q96IT1 587 aaPredicted RBP15.52■□□□□ 0.07
CLN3-210ENST00000563874 USP28Q96RU2 1077 aa15.52■□□□□ 0.07
CLN3-210ENST00000563874 ZSCAN16Q9H4T2 348 aaPredicted RBP15.52■□□□□ 0.07
CLN3-210ENST00000563874 COPRSQ9NQ92 184 aa15.52■□□□□ 0.07
CLN3-210ENST00000563874 PTPDC1A2A3K4 754 aa15.51■□□□□ 0.07
CLN3-210ENST00000563874 CTDNEP1O95476 244 aa15.51■□□□□ 0.07
CLN3-210ENST00000563874 RFX5P48382 616 aaPredicted RBP15.51■□□□□ 0.07
CLN3-210ENST00000563874 NSUN7Q8NE18 718 aaKnown RBP15.51■□□□□ 0.07
CLN3-210ENST00000563874 SMTNL1A8MU46 457 aa15.51■□□□□ 0.07
CLN3-210ENST00000563874 BECN2A8MW95 431 aa15.51■□□□□ 0.07
CLN3-210ENST00000563874 ZC3H6P61129 1189 aaKnown RBP15.51■□□□□ 0.07
CLN3-210ENST00000563874 CCDC112Q8NEF3 446 aa15.51■□□□□ 0.07
CLN3-210ENST00000563874 NEUROD6Q96NK8 337 aa15.51■□□□□ 0.07
CLN3-210ENST00000563874 LRRC8AQ8IWT6 810 aa15.5■□□□□ 0.07
CLN3-210ENST00000563874 BBXQ8WY36 941 aaPredicted RBP15.5■□□□□ 0.07
CLN3-210ENST00000563874 NCAPD2Q15021 1401 aa15.5■□□□□ 0.07
CLN3-210ENST00000563874 GOLIM4O00461 696 aa15.5■□□□□ 0.07
CLN3-210ENST00000563874 TRMT1Q9NXH9 659 aaKnown RBP15.5■□□□□ 0.07
CLN3-210ENST00000563874 A0A087WZG4 1122 aa15.49■□□□□ 0.07
CLN3-210ENST00000563874 ME1P48163 572 aa15.49■□□□□ 0.07
CLN3-210ENST00000563874 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.49■□□□□ 0.07
CLN3-210ENST00000563874 V9GYY5 206 aaPredicted RBP15.49■□□□□ 0.07
CLN3-210ENST00000563874 STX1AQ16623 288 aa15.49■□□□□ 0.07
CLN3-210ENST00000563874 CCDC73Q6ZRK6 1079 aa15.49■□□□□ 0.07
CLN3-210ENST00000563874 SMARCC2Q8TAQ2 1214 aa15.49■□□□□ 0.07
CLN3-210ENST00000563874 USP54Q70EL1 1684 aa15.49■□□□□ 0.07
CLN3-210ENST00000563874 PFKFB2O60825 505 aa15.49■□□□□ 0.07
CLN3-210ENST00000563874 KINO60870 393 aaKnown RBP15.49■□□□□ 0.07
CLN3-210ENST00000563874 SNW1Q13573 536 aaKnown RBP15.49■□□□□ 0.07
CLN3-210ENST00000563874 HAUS7Q99871 368 aa15.49■□□□□ 0.07
CLN3-210ENST00000563874 SKILP12757 684 aa15.48■□□□□ 0.07
CLN3-210ENST00000563874 TIMM10P62072 90 aa15.48■□□□□ 0.07
CLN3-210ENST00000563874 CEP135Q66GS9 1140 aa15.48■□□□□ 0.07
CLN3-210ENST00000563874 DHX32Q7L7V1 743 aaKnown RBP15.48■□□□□ 0.07
CLN3-210ENST00000563874 SLC52A2Q9HAB3 445 aa15.48■□□□□ 0.07
CLN3-210ENST00000563874 NLRP2Q9NX02 1062 aa15.48■□□□□ 0.07
CLN3-210ENST00000563874 LMBR1LQ6UX01 489 aa15.48■□□□□ 0.07
CLN3-210ENST00000563874 FSIP1Q8NA03 581 aa15.48■□□□□ 0.07
CLN3-210ENST00000563874 RCOR1Q9UKL0 485 aa15.48■□□□□ 0.07
CLN3-210ENST00000563874 OTUD7BQ6GQQ9 843 aa15.47■□□□□ 0.07
CLN3-210ENST00000563874 DHX40Q8IX18 779 aaKnown RBP15.47■□□□□ 0.07
CLN3-210ENST00000563874 AOPEPQ8N6M6 819 aa15.47■□□□□ 0.07
CLN3-210ENST00000563874 KBTBD3Q8NAB2 608 aa15.47■□□□□ 0.07
CLN3-210ENST00000563874 RAPGEF4Q8WZA2 1011 aa15.47■□□□□ 0.07
CLN3-210ENST00000563874 CCDC69A6NI79 296 aa15.47■□□□□ 0.07
CLN3-210ENST00000563874 UTP14CQ5TAP6 766 aaKnown RBP15.47■□□□□ 0.07
CLN3-210ENST00000563874 GPHNQ9NQX3 736 aaPredicted RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms