RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 FAM204AQ9H8W3 233 aa7.11□□□□□ -1.27
CLK3-212ENST00000563418 TRIM14Q14142 442 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 GRIPAP1Q4V328 841 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 FKBP15Q5T1M5 1219 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 CAPRIN2Q6IMN6 1127 aaKnown RBP7.1□□□□□ -1.27
CLK3-212ENST00000563418 VPS36Q86VN1 386 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 FSIP1Q8NA03 581 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 CDK5RAP3Q96JB5 506 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 PHAXQ9H814 394 aaKnown RBP7.1□□□□□ -1.27
CLK3-212ENST00000563418 G3BP1Q13283 466 aaKnown RBP eCLIP7.1□□□□□ -1.27
CLK3-212ENST00000563418 ERICH2A1L162 156 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 ETF1P62495 437 aaKnown RBP7.1□□□□□ -1.27
CLK3-212ENST00000563418 EXOSC9Q06265 439 aaKnown RBP7.1□□□□□ -1.27
CLK3-212ENST00000563418 MTMR3Q13615 1198 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 LRRC8AQ8IWT6 810 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 GDPD2Q9HCC8 539 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 ADAM21Q9UKJ8 722 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 ABCA5Q8WWZ7 1642 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 CFAP43Q8NDM7 1665 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 TMEM57Q8N5G2 664 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 GDAP1L1Q96MZ0 367 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 TMEM63CQ9P1W3 806 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 RASAL2Q9UJF2 1139 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 IL16Q14005 1332 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 UBTFL1P0CB47 393 aaPredicted RBP7.1□□□□□ -1.27
CLK3-212ENST00000563418 SLC30A9Q6PML9 568 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 IFT20Q8IY31 132 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 PDE11AQ9HCR9 933 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 ATP2C2O75185 946 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 PIK3R5Q8WYR1 880 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 DACT1Q9NYF0 836 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 BAIAP2L1Q9UHR4 511 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 RHOXF2BP0C7M4 288 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 RHOXF2Q9BQY4 288 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 CARD6Q9BX69 1037 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 MRFAP1Q9Y605 127 aa7.1□□□□□ -1.27
CLK3-212ENST00000563418 RAB11FIP3O75154 756 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 IRX4P78413 519 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 MUM1Q2TAK8 710 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 CLSTN2Q9H4D0 955 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 ETAA1Q9NY74 926 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 TOP2BQ02880 1626 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 ZBTB22O15209 634 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 HOOK3Q86VS8 718 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 KIF2CQ99661 725 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 NOP53Q9NZM5 478 aaKnown RBP7.09□□□□□ -1.27
CLK3-212ENST00000563418 HMG20BQ9P0W2 317 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 SCOCQ9UIL1 159 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 TPX2Q9ULW0 747 aaKnown RBP7.09□□□□□ -1.27
CLK3-212ENST00000563418 SLFN14P0C7P3 912 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 LZICQ8WZA0 190 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 LRRC45Q96CN5 670 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 CCDC113Q9H0I3 377 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 PHLDB3Q6NSJ2 640 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 AOPEPQ8N6M6 819 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 FSD1Q9BTV5 496 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 PLCB1Q9NQ66 1216 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 ORC3Q9UBD5 711 aaPredicted RBP7.09□□□□□ -1.27
CLK3-212ENST00000563418 POLR1AO95602 1720 aaPredicted RBP7.09□□□□□ -1.27
CLK3-212ENST00000563418 CTTNBP2Q8WZ74 1663 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 PNMA8AQ86V59 439 aaPredicted RBP7.09□□□□□ -1.27
CLK3-212ENST00000563418 TRIM58Q8NG06 486 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 FGFR1OPO95684 399 aaKnown RBP7.09□□□□□ -1.27
CLK3-212ENST00000563418 ARHGAP45Q92619 1136 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 SMC6Q96SB8 1091 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 CENPKQ9BS16 269 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 GNGT1P63211 74 aa7.09□□□□□ -1.27
CLK3-212ENST00000563418 SEC24BO95487 1268 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 TMED1Q13445 227 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 NFXL1Q6ZNB6 911 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 MRPS27Q92552 414 aaKnown RBP7.09□□□□□ -1.28
CLK3-212ENST00000563418 HOMER3Q9NSC5 361 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 TNNC1P63316 161 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 PLCB4Q15147 1175 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 LONRF2Q1L5Z9 754 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 CTNNBL1Q8WYA6 563 aaPredicted RBP7.09□□□□□ -1.28
CLK3-212ENST00000563418 SPAG5Q96R06 1193 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 PPP1R12CQ9BZL4 782 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 TRAK1Q9UPV9 953 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 FAN1Q9Y2M0 1017 aa7.09□□□□□ -1.28
CLK3-212ENST00000563418 EVI5O60447 810 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 CIB2O75838 187 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 INTS8Q75QN2 995 aaKnown RBP7.08□□□□□ -1.28
CLK3-212ENST00000563418 ZNF513Q8N8E2 541 aaPredicted RBP7.08□□□□□ -1.28
CLK3-212ENST00000563418 IQCDQ96DY2 449 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 SPDL1Q96EA4 605 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 PDCD7Q8N8D1 485 aaKnown RBP7.08□□□□□ -1.28
CLK3-212ENST00000563418 MYO1AQ9UBC5 1043 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 PRXQ9BXM0 1461 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 CCT5P48643 541 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 MAP7D1Q3KQU3 841 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 TRIM22Q8IYM9 498 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 PAF1Q8N7H5 531 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 PSME1Q06323 249 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 CCDC110Q8TBZ0 833 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 SLC24A3Q9HC58 644 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 MIS12Q9H081 205 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 SEC62Q99442 399 aaKnown RBP7.08□□□□□ -1.28
CLK3-212ENST00000563418 FAM114A2Q9NRY5 505 aa7.08□□□□□ -1.28
CLK3-212ENST00000563418 RTL1A6NKG5 1358 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms