RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 CWC27Q6UX04 472 aaKnown RBP21.92■■□□□ 1.1
COMMD4-208ENST00000563220 HELBQ8NG08 1087 aaPredicted RBP21.92■■□□□ 1.1
COMMD4-208ENST00000563220 AKT1S1Q96B36 256 aa21.92■■□□□ 1.1
COMMD4-208ENST00000563220 MROH5Q6ZUA9 1318 aa21.91■■□□□ 1.1
COMMD4-208ENST00000563220 SGSM2O43147 1006 aa21.91■■□□□ 1.1
COMMD4-208ENST00000563220 IGHMBP2P38935 993 aaKnown RBP21.91■■□□□ 1.1
COMMD4-208ENST00000563220 COL24A1Q17RW2 1714 aa21.91■■□□□ 1.1
COMMD4-208ENST00000563220 LRP5O75197 1615 aa21.91■■□□□ 1.1
COMMD4-208ENST00000563220 LAMB2P55268 1798 aa21.91■■□□□ 1.1
COMMD4-208ENST00000563220 NLRP3Q96P20 1036 aa21.9■■□□□ 1.1
COMMD4-208ENST00000563220 DNAJC2Q99543 621 aaKnown RBP21.9■■□□□ 1.1
COMMD4-208ENST00000563220 TFCP2L1Q9NZI6 479 aa21.9■■□□□ 1.1
COMMD4-208ENST00000563220 CARMIL3Q8ND23 1372 aa21.9■■□□□ 1.1
COMMD4-208ENST00000563220 FSD1Q9BTV5 496 aa21.9■■□□□ 1.1
COMMD4-208ENST00000563220 DIAPH3Q9NSV4 1193 aa21.9■■□□□ 1.1
COMMD4-208ENST00000563220 TM4SF1P30408 202 aa21.89■■□□□ 1.09
COMMD4-208ENST00000563220 CDC5LQ99459 802 aaKnown RBP21.89■■□□□ 1.09
COMMD4-208ENST00000563220 ANO2Q9NQ90 1003 aa21.89■■□□□ 1.09
COMMD4-208ENST00000563220 COL4A1P02462 1669 aa21.88■■□□□ 1.09
COMMD4-208ENST00000563220 FGFR2P21802 821 aa21.88■■□□□ 1.09
COMMD4-208ENST00000563220 CCDC158Q5M9N0 1113 aa21.88■■□□□ 1.09
COMMD4-208ENST00000563220 GORABQ5T7V8 394 aa21.88■■□□□ 1.09
COMMD4-208ENST00000563220 TAF5LO75529 589 aa21.88■■□□□ 1.09
COMMD4-208ENST00000563220 IFIT1P09914 478 aaKnown RBP21.88■■□□□ 1.09
COMMD4-208ENST00000563220 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.88■■□□□ 1.09
COMMD4-208ENST00000563220 SNAP23O00161 211 aa21.87■■□□□ 1.09
COMMD4-208ENST00000563220 ANKRD18AQ8IVF6 992 aa21.87■■□□□ 1.09
COMMD4-208ENST00000563220 CELF1Q92879 486 aaKnown RBP21.87■■□□□ 1.09
COMMD4-208ENST00000563220 NPHP1O15259 732 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 NMIQ13287 307 aaPredicted RBP21.86■■□□□ 1.09
COMMD4-208ENST00000563220 PUM3Q15397 648 aaKnown RBP21.86■■□□□ 1.09
COMMD4-208ENST00000563220 TTC39AQ5SRH9 613 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 DDX46Q7L014 1031 aaKnown RBP21.86■■□□□ 1.09
COMMD4-208ENST00000563220 COL23A1Q86Y22 540 aaPredicted RBP21.86■■□□□ 1.09
COMMD4-208ENST00000563220 FAM227BQ96M60 508 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 TBC1D2Q9BYX2 928 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 AK9Q5TCS8 1911 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 HIP1O00291 1037 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 CHRNDQ07001 517 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 PRR5LQ6MZQ0 368 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 CNBD1Q8NA66 436 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 RUFY2Q8WXA3 655 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 LPIN2Q92539 896 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 PAG1Q9NWQ8 432 aa21.86■■□□□ 1.09
COMMD4-208ENST00000563220 GOLIM4O00461 696 aa21.85■■□□□ 1.09
COMMD4-208ENST00000563220 SERPINB2P05120 415 aa21.85■■□□□ 1.09
COMMD4-208ENST00000563220 LSG1Q9H089 658 aaKnown RBP21.85■■□□□ 1.09
COMMD4-208ENST00000563220 BSDC1Q9NW68 430 aaPredicted RBP21.85■■□□□ 1.09
COMMD4-208ENST00000563220 SCARF1Q14162 830 aa21.84■■□□□ 1.09
COMMD4-208ENST00000563220 BECN1Q14457 450 aa21.84■■□□□ 1.09
COMMD4-208ENST00000563220 KBTBD3Q8NAB2 608 aa21.84■■□□□ 1.09
COMMD4-208ENST00000563220 DAXXQ9UER7 740 aaPredicted RBP21.84■■□□□ 1.09
COMMD4-208ENST00000563220 A0A0D9SFI3 127 aa21.83■■□□□ 1.09
COMMD4-208ENST00000563220 CHGBP05060 677 aa21.83■■□□□ 1.09
COMMD4-208ENST00000563220 DDR1Q08345 913 aa21.83■■□□□ 1.09
COMMD4-208ENST00000563220 ANTXR1Q9H6X2 564 aa21.83■■□□□ 1.09
COMMD4-208ENST00000563220 TNS1Q9HBL0 1735 aaKnown RBP21.83■■□□□ 1.09
COMMD4-208ENST00000563220 EPB41L2O43491 1005 aaKnown RBP21.83■■□□□ 1.08
COMMD4-208ENST00000563220 RPS8P62241 208 aaKnown RBP21.83■■□□□ 1.08
COMMD4-208ENST00000563220 CAMKK2Q96RR4 588 aa21.83■■□□□ 1.08
COMMD4-208ENST00000563220 SNRKQ9NRH2 765 aa21.83■■□□□ 1.08
COMMD4-208ENST00000563220 FKBP4Q02790 459 aaKnown RBP eCLIP21.82■■□□□ 1.08
COMMD4-208ENST00000563220 EN1Q05925 392 aaPredicted RBP21.82■■□□□ 1.08
COMMD4-208ENST00000563220 EZH2Q15910 746 aaKnown RBP21.82■■□□□ 1.08
COMMD4-208ENST00000563220 MINPP1Q9UNW1 487 aa21.82■■□□□ 1.08
COMMD4-208ENST00000563220 POLRMTO00411 1230 aaKnown RBP21.81■■□□□ 1.08
COMMD4-208ENST00000563220 SLC5A1P13866 664 aa21.81■■□□□ 1.08
COMMD4-208ENST00000563220 CCDC102BQ68D86 513 aa21.81■■□□□ 1.08
COMMD4-208ENST00000563220 ZNF512BQ96KM6 892 aaPredicted RBP21.81■■□□□ 1.08
COMMD4-208ENST00000563220 PHKA1P46020 1223 aa21.81■■□□□ 1.08
COMMD4-208ENST00000563220 PI16Q6UXB8 463 aa21.81■■□□□ 1.08
COMMD4-208ENST00000563220 KIAA1211Q6ZU35 1233 aa21.81■■□□□ 1.08
COMMD4-208ENST00000563220 PALD1Q9ULE6 856 aa21.81■■□□□ 1.08
COMMD4-208ENST00000563220 RFX7Q2KHR2 1363 aa21.8■■□□□ 1.08
COMMD4-208ENST00000563220 RAD50Q92878 1312 aa21.8■■□□□ 1.08
COMMD4-208ENST00000563220 MCAMP43121 646 aa21.8■■□□□ 1.08
COMMD4-208ENST00000563220 ZAP70P43403 619 aa21.8■■□□□ 1.08
COMMD4-208ENST00000563220 PTH1RQ03431 593 aa21.8■■□□□ 1.08
COMMD4-208ENST00000563220 SNX21Q969T3 373 aa21.8■■□□□ 1.08
COMMD4-208ENST00000563220 FLAD1Q8NFF5 587 aa21.79■■□□□ 1.08
COMMD4-208ENST00000563220 PNPLA7Q6ZV29 1317 aa21.79■■□□□ 1.08
COMMD4-208ENST00000563220 WTIPA6NIX2 430 aaPredicted RBP21.79■■□□□ 1.08
COMMD4-208ENST00000563220 CD2BP2O95400 341 aaKnown RBP21.79■■□□□ 1.08
COMMD4-208ENST00000563220 MCCP23508 829 aa21.79■■□□□ 1.08
COMMD4-208ENST00000563220 HSPA4P34932 840 aa21.79■■□□□ 1.08
COMMD4-208ENST00000563220 RABEP1Q15276 862 aa21.79■■□□□ 1.08
COMMD4-208ENST00000563220 TAF1P21675 1872 aa21.78■■□□□ 1.08
COMMD4-208ENST00000563220 TNRC6CQ9HCJ0 1690 aaKnown RBP21.78■■□□□ 1.08
COMMD4-208ENST00000563220 ARID4AP29374 1257 aaPredicted RBP21.78■■□□□ 1.08
COMMD4-208ENST00000563220 SLFNL1Q499Z3 407 aa21.78■■□□□ 1.08
COMMD4-208ENST00000563220 ZNF589Q86UQ0 364 aaPredicted RBP21.78■■□□□ 1.08
COMMD4-208ENST00000563220 NLGN1Q8N2Q7 840 aa21.78■■□□□ 1.08
COMMD4-208ENST00000563220 ST5P78524 1137 aa21.77■■□□□ 1.08
COMMD4-208ENST00000563220 SEC62Q99442 399 aaKnown RBP21.77■■□□□ 1.08
COMMD4-208ENST00000563220 ANO8Q9HCE9 1232 aaPredicted RBP21.77■■□□□ 1.08
COMMD4-208ENST00000563220 MED23Q9ULK4 1368 aa21.77■■□□□ 1.08
COMMD4-208ENST00000563220 SPEF2Q9C093 1822 aa21.77■■□□□ 1.08
COMMD4-208ENST00000563220 TICAM2Q86XR7 235 aa21.77■■□□□ 1.08
COMMD4-208ENST00000563220 CASZ1Q86V15 1759 aa21.76■■□□□ 1.07
COMMD4-208ENST00000563220 UQCRFS1P1P0C7P4 283 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 173.4 ms