RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 CFAP69A5D8W1 941 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 HMGB1P1B2RPK0 211 aaPredicted RBP8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 NPHP1O15259 732 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 NDUFB5O43674 189 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 STAU1O95793 577 aaKnown RBP8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 PAF1Q8N7H5 531 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 TTC13Q8NBP0 860 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 BOLA1Q9Y3E2 137 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 FUT2Q10981 343 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 COL19A1Q14993 1142 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 EML3Q32P44 896 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 C8orf48Q96LL4 319 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 EYA1Q99502 592 aa8.13□□□□□ -1.11
TSPAN3-209ENST00000560715 SHTN1A0MZ66 631 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 ALDH1L1O75891 902 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 BPNT1O95861 308 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 CD53P19397 219 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 MASP1P48740 699 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 NASPP49321 788 aaPredicted RBP8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 GTF2IP78347 998 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 ZNF280DQ6N043 979 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 KSR2Q6VAB6 950 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 ZNF654Q8IZM8 581 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 EPAS1Q99814 870 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 ST7Q9NRC1 585 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 KIF13AQ9H1H9 1805 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 BRD4O60885 1362 aaPredicted RBP8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 PRPF3O43395 683 aaKnown RBP8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 SEC24BO95487 1268 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 CBX1P83916 185 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 PLCB3Q01970 1234 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 RINLQ6ZS11 566 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 CEP89Q96ST8 783 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 CGNQ9P2M7 1197 aaKnown RBP8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 PRKAR2AP13861 404 aaKnown RBP8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 PRSS12P56730 875 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 SF3B2Q13435 895 aaKnown RBP8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 C20orf194Q5TEA3 1177 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 TYW1BQ6NUM6 668 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 HELQQ8TDG4 1101 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 CRELD1Q96HD1 420 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 AS3MTQ9HBK9 375 aa8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 CTDP1Q9Y5B0 961 aaPredicted RBP8.12□□□□□ -1.11
TSPAN3-209ENST00000560715 EIF1AXP47813 144 aaKnown RBP8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 ORC1Q13415 861 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 TTF1Q15361 905 aaPredicted RBP8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 GET4Q7L5D6 327 aaPredicted RBP8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 VPS37DQ86XT2 251 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 CFHR5Q9BXR6 569 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 TSKSQ9UJT2 592 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 TRAPPC8Q9Y2L5 1435 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 ZBTB39O15060 712 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 MCM5P33992 734 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 IRX5P78411 483 aaPredicted RBP8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 MYBPC2Q14324 1141 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 SKOR2Q2VWA4 1001 aaPredicted RBP8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 FAM26DQ5JW98 314 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 CELF2-AS1Q8N7Q2 184 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 C1orf131Q8NDD1 294 aaKnown RBP8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 VPS37AQ8NEZ2 397 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 SCYL1Q96KG9 808 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 TBC1D32Q96NH3 1257 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 ZFYVE16Q7Z3T8 1539 aa8.11□□□□□ -1.11
TSPAN3-209ENST00000560715 RALGAPBQ86X10 1494 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 KDM5CP41229 1560 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 SLC10A3P09131 477 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 ATF3P18847 181 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 GJA8P48165 433 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 TRAF7Q6Q0C0 670 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 HS2ST1Q7LGA3 356 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 ANAPC16Q96DE5 110 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 PAGR1Q9BTK6 254 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 TMEM134Q9H6X4 195 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 FANCAO15360 1455 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 ATP10AO60312 1499 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 ASXL2Q76L83 1435 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 ZBTB24O43167 697 aaPredicted RBP8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 GPRASP2Q96D09 838 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 BSDC1Q9NW68 430 aaPredicted RBP8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 CNTN3Q9P232 1028 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 ZRANB1Q9UGI0 708 aa8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 NOB1Q9ULX3 412 aaKnown RBP8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 ROCK2O75116 1388 aaKnown RBP8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 INO80Q9ULG1 1556 aaPredicted RBP8.1□□□□□ -1.11
TSPAN3-209ENST00000560715 DEPDC5O75140 1603 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 TRAPPC10P48553 1259 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 PDILTQ8N807 584 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 ADAM33Q9BZ11 813 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 UPF2Q9HAU5 1272 aaKnown RBP8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 ARNT2Q9HBZ2 717 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 TSPAN6O43657 245 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 FZD6O60353 706 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 KRT18P05783 430 aaKnown RBP8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 PPP2R5AQ15172 486 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 ATP2B3Q16720 1220 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 SOGA3Q5TF21 947 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 MYRIPQ8NFW9 859 aa8.09□□□□□ -1.11
TSPAN3-209ENST00000560715 CENPOQ9BU64 300 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms