RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 PODXL2Q9NZ53 605 aa16.06■□□□□ 0.16
SNX1-209ENST00000559961 ANKRD36CQ5JPF3 1778 aa16.05■□□□□ 0.16
SNX1-209ENST00000559961 WDR33Q9C0J8 1336 aaKnown RBP16.05■□□□□ 0.16
SNX1-209ENST00000559961 PSMD14O00487 310 aa16.05■□□□□ 0.16
SNX1-209ENST00000559961 CELF2O95319 508 aaKnown RBP16.05■□□□□ 0.16
SNX1-209ENST00000559961 ATP2B4P23634 1241 aa16.05■□□□□ 0.16
SNX1-209ENST00000559961 DCPSQ96C86 337 aaKnown RBP16.05■□□□□ 0.16
SNX1-209ENST00000559961 ZNF408Q9H9D4 720 aa16.05■□□□□ 0.16
SNX1-209ENST00000559961 XDHP47989 1333 aa16.04■□□□□ 0.16
SNX1-209ENST00000559961 YDJCA8MPS7 323 aa16.04■□□□□ 0.16
SNX1-209ENST00000559961 IGHMBP2P38935 993 aaKnown RBP16.04■□□□□ 0.16
SNX1-209ENST00000559961 CTSWP56202 376 aa16.04■□□□□ 0.16
SNX1-209ENST00000559961 RBM26Q5T8P6 1007 aaKnown RBP16.04■□□□□ 0.16
SNX1-209ENST00000559961 FAM9BQ8IZU0 186 aa16.04■□□□□ 0.16
SNX1-209ENST00000559961 ZBTB12Q9Y330 459 aaPredicted RBP16.04■□□□□ 0.16
SNX1-209ENST00000559961 COL4A5P29400 1685 aa16.03■□□□□ 0.16
SNX1-209ENST00000559961 TRAF5O00463 557 aa16.03■□□□□ 0.16
SNX1-209ENST00000559961 FLIIQ13045 1269 aa16.03■□□□□ 0.16
SNX1-209ENST00000559961 CAPNS2Q96L46 248 aa16.03■□□□□ 0.16
SNX1-209ENST00000559961 MPHOSPH8Q99549 860 aa16.03■□□□□ 0.16
SNX1-209ENST00000559961 NEURL1BA8MQ27 555 aa16.02■□□□□ 0.16
SNX1-209ENST00000559961 CAPN15O75808 1086 aa16.02■□□□□ 0.16
SNX1-209ENST00000559961 UBE3BQ7Z3V4 1068 aa16.02■□□□□ 0.16
SNX1-209ENST00000559961 DNAAF4Q8WXU2 420 aa16.02■□□□□ 0.16
SNX1-209ENST00000559961 GPR101Q96P66 508 aaPredicted RBP16.02■□□□□ 0.16
SNX1-209ENST00000559961 GLIS2Q9BZE0 524 aaPredicted RBP16.02■□□□□ 0.16
SNX1-209ENST00000559961 PRDM10Q9NQV6 1147 aa16.02■□□□□ 0.16
SNX1-209ENST00000559961 BSDC1Q9NW68 430 aaPredicted RBP16.02■□□□□ 0.16
SNX1-209ENST00000559961 PGAP2Q9UHJ9 254 aa16.02■□□□□ 0.16
SNX1-209ENST00000559961 TLL2Q9Y6L7 1015 aa16.02■□□□□ 0.16
SNX1-209ENST00000559961 IGKV5-2P06315 115 aa16.01■□□□□ 0.15
SNX1-209ENST00000559961 CWF19L2Q2TBE0 894 aaKnown RBP16.01■□□□□ 0.15
SNX1-209ENST00000559961 TBC1D10BQ4KMP7 808 aaPredicted RBP16.01■□□□□ 0.15
SNX1-209ENST00000559961 KRT26Q7Z3Y9 468 aa16.01■□□□□ 0.15
SNX1-209ENST00000559961 PODNQ7Z5L7 613 aa16.01■□□□□ 0.15
SNX1-209ENST00000559961 USP48Q86UV5 1035 aa16.01■□□□□ 0.15
SNX1-209ENST00000559961 TTLL11Q8NHH1 800 aa16.01■□□□□ 0.15
SNX1-209ENST00000559961 WBP1LQ9NX94 342 aa16.01■□□□□ 0.15
SNX1-209ENST00000559961 FANCIQ9NVI1 1328 aa16■□□□□ 0.15
SNX1-209ENST00000559961 FOXN1O15353 648 aa16■□□□□ 0.15
SNX1-209ENST00000559961 VIL1P09327 827 aaKnown RBP16■□□□□ 0.15
SNX1-209ENST00000559961 KCNJ4P48050 445 aa16■□□□□ 0.15
SNX1-209ENST00000559961 EXOSC9Q06265 439 aaKnown RBP16■□□□□ 0.15
SNX1-209ENST00000559961 GCKRQ14397 625 aa16■□□□□ 0.15
SNX1-209ENST00000559961 CST9Q5W186 159 aa16■□□□□ 0.15
SNX1-209ENST00000559961 SAMD7Q7Z3H4 446 aa16■□□□□ 0.15
SNX1-209ENST00000559961 SULF1Q8IWU6 871 aa16■□□□□ 0.15
SNX1-209ENST00000559961 C2orf69Q8N8R5 385 aa16■□□□□ 0.15
SNX1-209ENST00000559961 AGBL3Q8NEM8 1001 aa16■□□□□ 0.15
SNX1-209ENST00000559961 LINS1Q8NG48 757 aa16■□□□□ 0.15
SNX1-209ENST00000559961 TRPM4Q8TD43 1214 aa16■□□□□ 0.15
SNX1-209ENST00000559961 ANKRD2Q9GZV1 360 aa16■□□□□ 0.15
SNX1-209ENST00000559961 H7C1W4 665 aa15.99■□□□□ 0.15
SNX1-209ENST00000559961 MAP2K2P36507 400 aa15.99■□□□□ 0.15
SNX1-209ENST00000559961 HIRAP54198 1017 aaPredicted RBP15.99■□□□□ 0.15
SNX1-209ENST00000559961 KIF4BQ2VIQ3 1234 aa15.99■□□□□ 0.15
SNX1-209ENST00000559961 CYP4F22Q6NT55 531 aa15.99■□□□□ 0.15
SNX1-209ENST00000559961 G2E3Q7L622 706 aa15.99■□□□□ 0.15
SNX1-209ENST00000559961 OGFOD1Q8N543 542 aa15.99■□□□□ 0.15
SNX1-209ENST00000559961 FBXW7Q969H0 707 aa15.99■□□□□ 0.15
SNX1-209ENST00000559961 GREM2Q9H772 168 aa15.99■□□□□ 0.15
SNX1-209ENST00000559961 USP17L3A6NCW0 530 aa15.98■□□□□ 0.15
SNX1-209ENST00000559961 USP17L4A6NCW7 530 aa15.98■□□□□ 0.15
SNX1-209ENST00000559961 VAMP4O75379 141 aa15.98■□□□□ 0.15
SNX1-209ENST00000559961 FMR1Q06787 632 aaKnown RBP eCLIP15.98■□□□□ 0.15
SNX1-209ENST00000559961 RSBN1LQ6PCB5 846 aaPredicted RBP15.98■□□□□ 0.15
SNX1-209ENST00000559961 USP17L1Q7RTZ2 530 aa15.98■□□□□ 0.15
SNX1-209ENST00000559961 HHIPL1Q96JK4 782 aa15.98■□□□□ 0.15
SNX1-209ENST00000559961 KCNQ5Q9NR82 932 aa15.98■□□□□ 0.15
SNX1-209ENST00000559961 MINPP1Q9UNW1 487 aa15.98■□□□□ 0.15
SNX1-209ENST00000559961 LEMD3Q9Y2U8 911 aa15.98■□□□□ 0.15
SNX1-209ENST00000559961 CHMP3Q9Y3E7 222 aa15.98■□□□□ 0.15
SNX1-209ENST00000559961 ANKRD18BA2A2Z9 1011 aa15.97■□□□□ 0.15
SNX1-209ENST00000559961 USP17L8P0C7I0 530 aa15.97■□□□□ 0.15
SNX1-209ENST00000559961 ITGA6P23229 1130 aa15.97■□□□□ 0.15
SNX1-209ENST00000559961 CCT4P50991 539 aaKnown RBP15.97■□□□□ 0.15
SNX1-209ENST00000559961 LBX1P52954 281 aa15.97■□□□□ 0.15
SNX1-209ENST00000559961 TAF7LQ5H9L4 462 aa15.97■□□□□ 0.15
SNX1-209ENST00000559961 SAPCD2Q86UD0 394 aa15.97■□□□□ 0.15
SNX1-209ENST00000559961 LAMB2P55268 1798 aa15.96■□□□□ 0.15
SNX1-209ENST00000559961 ADAMTSL1Q8N6G6 1762 aa15.96■□□□□ 0.15
SNX1-209ENST00000559961 CA12O43570 354 aa15.96■□□□□ 0.15
SNX1-209ENST00000559961 HUNKP57058 714 aa15.96■□□□□ 0.15
SNX1-209ENST00000559961 IFIT5Q13325 482 aaKnown RBP15.96■□□□□ 0.15
SNX1-209ENST00000559961 PLA2G12BQ9BX93 195 aa15.96■□□□□ 0.15
SNX1-209ENST00000559961 RTL9Q8NET4 1388 aa15.96■□□□□ 0.15
SNX1-209ENST00000559961 DDX60Q8IY21 1712 aaKnown RBP15.95■□□□□ 0.14
SNX1-209ENST00000559961 SHTN1A0MZ66 631 aa15.95■□□□□ 0.14
SNX1-209ENST00000559961 MMP14P50281 582 aa15.95■□□□□ 0.14
SNX1-209ENST00000559961 COA1Q9GZY4 146 aa15.95■□□□□ 0.14
SNX1-209ENST00000559961 C9orf78Q9NZ63 289 aaPredicted RBP15.95■□□□□ 0.14
SNX1-209ENST00000559961 MYO3BQ8WXR4 1341 aa15.94■□□□□ 0.14
SNX1-209ENST00000559961 LTBP1Q14766 1721 aa15.94■□□□□ 0.14
SNX1-209ENST00000559961 NOGQ13253 232 aa15.94■□□□□ 0.14
SNX1-209ENST00000559961 SCARF1Q14162 830 aa15.94■□□□□ 0.14
SNX1-209ENST00000559961 CCDC102AQ96A19 550 aa15.94■□□□□ 0.14
SNX1-209ENST00000559961 GBA2Q9HCG7 927 aaPredicted RBP15.94■□□□□ 0.14
SNX1-209ENST00000559961 HDAC9Q9UKV0 1011 aa15.94■□□□□ 0.14
SNX1-209ENST00000559961 MED23Q9ULK4 1368 aa15.94■□□□□ 0.14
SNX1-209ENST00000559961 ZNF804BA4D1E1 1349 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms