RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 C3orf67Q6ZVT6 689 aa21.61■■□□□ 1.05
SNX1-208ENST00000559844 NLRP3Q96P20 1036 aa21.61■■□□□ 1.05
SNX1-208ENST00000559844 CHMP5Q9NZZ3 219 aa21.61■■□□□ 1.05
SNX1-208ENST00000559844 COL11A2P13942 1736 aaPredicted RBP21.6■■□□□ 1.05
SNX1-208ENST00000559844 K7ELQ4 463 aaPredicted RBP21.6■■□□□ 1.05
SNX1-208ENST00000559844 ECHDC1Q9NTX5 307 aa21.6■■□□□ 1.05
SNX1-208ENST00000559844 MCCP23508 829 aa21.59■■□□□ 1.05
SNX1-208ENST00000559844 CTSWP56202 376 aa21.59■■□□□ 1.05
SNX1-208ENST00000559844 CCDC85AQ96PX6 553 aaPredicted RBP21.59■■□□□ 1.05
SNX1-208ENST00000559844 KLHL34Q8N239 644 aa21.59■■□□□ 1.05
SNX1-208ENST00000559844 COPRSQ9NQ92 184 aa21.59■■□□□ 1.05
SNX1-208ENST00000559844 PPP1R1BQ9UD71 204 aaPredicted RBP21.59■■□□□ 1.05
SNX1-208ENST00000559844 TAF1P21675 1872 aa21.59■■□□□ 1.05
SNX1-208ENST00000559844 SASH1O94885 1247 aa21.58■■□□□ 1.05
SNX1-208ENST00000559844 PDE6BP35913 854 aa21.58■■□□□ 1.05
SNX1-208ENST00000559844 LMBR1LQ6UX01 489 aa21.58■■□□□ 1.05
SNX1-208ENST00000559844 CHMP3Q9Y3E7 222 aa21.58■■□□□ 1.05
SNX1-208ENST00000559844 AACSQ86V21 672 aa21.57■■□□□ 1.04
SNX1-208ENST00000559844 SPRYD3Q8NCJ5 442 aa21.57■■□□□ 1.04
SNX1-208ENST00000559844 TTLL11Q8NHH1 800 aa21.57■■□□□ 1.04
SNX1-208ENST00000559844 AK9Q5TCS8 1911 aa21.57■■□□□ 1.04
SNX1-208ENST00000559844 SF3B3Q15393 1217 aaKnown RBP21.56■■□□□ 1.04
SNX1-208ENST00000559844 CSF1RP07333 972 aa21.56■■□□□ 1.04
SNX1-208ENST00000559844 CRY2Q49AN0 593 aa21.56■■□□□ 1.04
SNX1-208ENST00000559844 CCDC152Q4G0S7 254 aa21.56■■□□□ 1.04
SNX1-208ENST00000559844 CACNA1SQ13698 1873 aa21.55■■□□□ 1.04
SNX1-208ENST00000559844 ST18O60284 1047 aa21.55■■□□□ 1.04
SNX1-208ENST00000559844 RFX5P48382 616 aaPredicted RBP21.55■■□□□ 1.04
SNX1-208ENST00000559844 GREM2Q9H772 168 aa21.55■■□□□ 1.04
SNX1-208ENST00000559844 CIZ1Q9ULV3 898 aaPredicted RBP21.55■■□□□ 1.04
SNX1-208ENST00000559844 DLEC1Q9Y238 1755 aa21.55■■□□□ 1.04
SNX1-208ENST00000559844 SPEF2Q9C093 1822 aa21.55■■□□□ 1.04
SNX1-208ENST00000559844 KIAA1551Q9HCM1 1747 aa21.54■■□□□ 1.04
SNX1-208ENST00000559844 KLRG2A4D1S0 409 aaPredicted RBP21.54■■□□□ 1.04
SNX1-208ENST00000559844 FRAT2O75474 233 aaPredicted RBP21.54■■□□□ 1.04
SNX1-208ENST00000559844 ANAPC15P60006 121 aa21.54■■□□□ 1.04
SNX1-208ENST00000559844 RPGRQ92834 1020 aaKnown RBP21.54■■□□□ 1.04
SNX1-208ENST00000559844 SIL1Q9H173 461 aa21.54■■□□□ 1.04
SNX1-208ENST00000559844 ANO2Q9NQ90 1003 aa21.54■■□□□ 1.04
SNX1-208ENST00000559844 LRP5O75197 1615 aa21.54■■□□□ 1.04
SNX1-208ENST00000559844 C2CD5Q86YS7 1000 aa21.54■■□□□ 1.04
SNX1-208ENST00000559844 IL27Q8NEV9 243 aa21.54■■□□□ 1.04
SNX1-208ENST00000559844 SRCAPQ6ZRS2 3230 aa21.53■■□□□ 1.04
SNX1-208ENST00000559844 H0YIN7 160 aa21.53■■□□□ 1.04
SNX1-208ENST00000559844 CD2BP2O95400 341 aaKnown RBP21.53■■□□□ 1.04
SNX1-208ENST00000559844 MAP4K4O95819 1239 aaPredicted RBP21.53■■□□□ 1.04
SNX1-208ENST00000559844 HSP90AA1P07900 732 aaKnown RBP21.53■■□□□ 1.04
SNX1-208ENST00000559844 CHRNA5P30532 468 aa21.53■■□□□ 1.04
SNX1-208ENST00000559844 PTPN12Q05209 780 aaKnown RBP21.53■■□□□ 1.04
SNX1-208ENST00000559844 EAF2Q96CJ1 260 aaPredicted RBP21.53■■□□□ 1.04
SNX1-208ENST00000559844 CD2APQ9Y5K6 639 aa21.53■■□□□ 1.04
SNX1-208ENST00000559844 SRGNP10124 158 aa21.52■■□□□ 1.04
SNX1-208ENST00000559844 DDIT3P35638 169 aa21.52■■□□□ 1.04
SNX1-208ENST00000559844 EVI5LQ96CN4 794 aa21.52■■□□□ 1.04
SNX1-208ENST00000559844 ITGA6P23229 1130 aa21.52■■□□□ 1.04
SNX1-208ENST00000559844 CCDC57Q2TAC2 916 aa21.52■■□□□ 1.04
SNX1-208ENST00000559844 RUFY2Q8WXA3 655 aa21.52■■□□□ 1.04
SNX1-208ENST00000559844 SEC31BQ9NQW1 1179 aa21.52■■□□□ 1.04
SNX1-208ENST00000559844 RTL9Q8NET4 1388 aa21.51■■□□□ 1.03
SNX1-208ENST00000559844 IFIT5Q13325 482 aaKnown RBP21.51■■□□□ 1.03
SNX1-208ENST00000559844 DDX46Q7L014 1031 aaKnown RBP21.51■■□□□ 1.03
SNX1-208ENST00000559844 IL17RAQ96F46 866 aa21.51■■□□□ 1.03
SNX1-208ENST00000559844 COL4A1P02462 1669 aa21.51■■□□□ 1.03
SNX1-208ENST00000559844 SGSM2O43147 1006 aa21.5■■□□□ 1.03
SNX1-208ENST00000559844 KLHDC4Q8TBB5 520 aa21.5■■□□□ 1.03
SNX1-208ENST00000559844 FHDC1Q9C0D6 1143 aaPredicted RBP21.5■■□□□ 1.03
SNX1-208ENST00000559844 A0A0G2JLW4 131 aa21.5■■□□□ 1.03
SNX1-208ENST00000559844 ANKRD18BA2A2Z9 1011 aa21.5■■□□□ 1.03
SNX1-208ENST00000559844 NPR1P16066 1061 aa21.5■■□□□ 1.03
SNX1-208ENST00000559844 TGFB2P61812 414 aa21.5■■□□□ 1.03
SNX1-208ENST00000559844 ZNF622Q969S3 477 aaKnown RBP eCLIP21.5■■□□□ 1.035e-7■■■■□ 20.8
SNX1-208ENST00000559844 MASTLQ96GX5 879 aa21.5■■□□□ 1.03
SNX1-208ENST00000559844 RBM17Q96I25 401 aaKnown RBP21.5■■□□□ 1.03
SNX1-208ENST00000559844 BRCA1P38398 1863 aaKnown RBP21.49■■□□□ 1.03
SNX1-208ENST00000559844 HIP1O00291 1037 aa21.49■■□□□ 1.03
SNX1-208ENST00000559844 DPEP1P16444 411 aa21.49■■□□□ 1.03
SNX1-208ENST00000559844 CCDC8Q9H0W5 538 aaPredicted RBP21.49■■□□□ 1.03
SNX1-208ENST00000559844 DIAPH3Q9NSV4 1193 aa21.49■■□□□ 1.03
SNX1-208ENST00000559844 HOXA10P31260 410 aaPredicted RBP21.48■■□□□ 1.03
SNX1-208ENST00000559844 TAF7LQ5H9L4 462 aa21.48■■□□□ 1.03
SNX1-208ENST00000559844 DEKP35659 375 aaKnown RBP21.47■■□□□ 1.03
SNX1-208ENST00000559844 MCM2P49736 904 aa21.47■■□□□ 1.03
SNX1-208ENST00000559844 STYK1Q6J9G0 422 aa21.47■■□□□ 1.03
SNX1-208ENST00000559844 KIAA1211Q6ZU35 1233 aa21.47■■□□□ 1.03
SNX1-208ENST00000559844 CELF1Q92879 486 aaKnown RBP21.47■■□□□ 1.03
SNX1-208ENST00000559844 ZNF594Q96JF6 807 aaPredicted RBP21.47■■□□□ 1.03
SNX1-208ENST00000559844 CDC5LQ99459 802 aaKnown RBP21.47■■□□□ 1.03
SNX1-208ENST00000559844 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.47■■□□□ 1.03
SNX1-208ENST00000559844 TNNI3KQ59H18 835 aa21.47■■□□□ 1.03
SNX1-208ENST00000559844 NLGN2Q8NFZ4 835 aa21.47■■□□□ 1.03
SNX1-208ENST00000559844 CRAMP1Q96RY5 1269 aa21.47■■□□□ 1.03
SNX1-208ENST00000559844 FPGT-TNNI3KV9GXZ4 949 aa21.47■■□□□ 1.03
SNX1-208ENST00000559844 SLX4Q8IY92 1834 aa21.46■■□□□ 1.03
SNX1-208ENST00000559844 RAD50Q92878 1312 aa21.46■■□□□ 1.03
SNX1-208ENST00000559844 GRAPQ13588 217 aa21.46■■□□□ 1.03
SNX1-208ENST00000559844 GRAPLQ8TC17 118 aaPredicted RBP21.46■■□□□ 1.03
SNX1-208ENST00000559844 KCNA3P22001 575 aa21.45■■□□□ 1.02
SNX1-208ENST00000559844 HSPA4P34932 840 aa21.45■■□□□ 1.02
SNX1-208ENST00000559844 TFCP2Q12800 502 aa21.45■■□□□ 1.02
SNX1-208ENST00000559844 ANKRD18AQ8IVF6 992 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms