RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 VSIG10Q8N0Z9 540 aa12.69□□□□□ -0.38
CUX1-217ENST00000558836 XAGE2Q96GT9 111 aa12.69□□□□□ -0.38
CUX1-217ENST00000558836 FIBPO43427 364 aa12.68□□□□□ -0.38
CUX1-217ENST00000558836 PCCAP05165 728 aaPredicted RBP12.68□□□□□ -0.38
CUX1-217ENST00000558836 ZSCAN22P10073 491 aaPredicted RBP12.68□□□□□ -0.38
CUX1-217ENST00000558836 RPS6KB1P23443 525 aa12.68□□□□□ -0.38
CUX1-217ENST00000558836 PSMA5P28066 241 aa12.68□□□□□ -0.38
CUX1-217ENST00000558836 FAM173BQ6P4H8 233 aa12.68□□□□□ -0.38
CUX1-217ENST00000558836 BCL9O00512 1426 aa12.68□□□□□ -0.38
CUX1-217ENST00000558836 ITGB4P16144 1822 aa12.68□□□□□ -0.38
CUX1-217ENST00000558836 ITGA6P23229 1130 aa12.68□□□□□ -0.38
CUX1-217ENST00000558836 KCNQ4P56696 695 aa12.68□□□□□ -0.38
CUX1-217ENST00000558836 LDHAL6AQ6ZMR3 332 aa12.68□□□□□ -0.38
CUX1-217ENST00000558836 CHST3Q7LGC8 479 aa12.68□□□□□ -0.38
CUX1-217ENST00000558836 DZIP3Q86Y13 1208 aaKnown RBP12.68□□□□□ -0.38
CUX1-217ENST00000558836 HELBQ8NG08 1087 aaPredicted RBP12.68□□□□□ -0.38
CUX1-217ENST00000558836 PAPPAQ13219 1627 aa12.67□□□□□ -0.38
CUX1-217ENST00000558836 SNAP23O00161 211 aa12.67□□□□□ -0.38
CUX1-217ENST00000558836 DDB1Q16531 1140 aa12.67□□□□□ -0.38
CUX1-217ENST00000558836 ROBO1Q9Y6N7 1651 aa12.67□□□□□ -0.38
CUX1-217ENST00000558836 IRS4O14654 1257 aaPredicted RBP12.67□□□□□ -0.38
CUX1-217ENST00000558836 TTC39AQ5SRH9 613 aa12.67□□□□□ -0.38
CUX1-217ENST00000558836 TTLL5Q6EMB2 1281 aa12.67□□□□□ -0.38
CUX1-217ENST00000558836 STOX1Q6ZVD7 989 aa12.67□□□□□ -0.38
CUX1-217ENST00000558836 TTLL11Q8NHH1 800 aa12.67□□□□□ -0.38
CUX1-217ENST00000558836 RBSNQ9H1K0 784 aa12.67□□□□□ -0.38
CUX1-217ENST00000558836 RRAGDQ9NQL2 400 aaPredicted RBP12.67□□□□□ -0.38
CUX1-217ENST00000558836 HCLS1P14317 486 aaPredicted RBP12.66□□□□□ -0.38
CUX1-217ENST00000558836 NASPP49321 788 aaPredicted RBP12.66□□□□□ -0.38
CUX1-217ENST00000558836 METTL24Q5JXM2 366 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 NEK1Q96PY6 1258 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 ATP6V1AP38606 617 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 DNM1Q05193 864 aaKnown RBP12.66□□□□□ -0.38
CUX1-217ENST00000558836 TRIM28Q13263 835 aaKnown RBP12.66□□□□□ -0.38
CUX1-217ENST00000558836 Q6ZUG5 572 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 RNF214Q8ND24 703 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 CNNM1Q9NRU3 951 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 UBN2Q6ZU65 1347 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 M0R2C6 588 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 KCNQ2O43526 872 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 CIAO1O76071 339 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 F13A1P00488 732 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 ZAP70P43403 619 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 FGD1P98174 961 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 WASHC4Q2M389 1173 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 CCDC158Q5M9N0 1113 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 LARP1BQ659C4 914 aaKnown RBP12.66□□□□□ -0.38
CUX1-217ENST00000558836 SMIM5Q71RC9 77 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 ZSCAN31Q96LW9 406 aaPredicted RBP12.66□□□□□ -0.38
CUX1-217ENST00000558836 SH2B1Q9NRF2 756 aaPredicted RBP12.66□□□□□ -0.38
CUX1-217ENST00000558836 MTMR6Q9Y217 621 aa12.66□□□□□ -0.38
CUX1-217ENST00000558836 DISP2A7MBM2 1401 aa12.65□□□□□ -0.38
CUX1-217ENST00000558836 JAK2O60674 1132 aa12.65□□□□□ -0.38
CUX1-217ENST00000558836 CSF1RP07333 972 aa12.65□□□□□ -0.38
CUX1-217ENST00000558836 HSP90B1P14625 803 aaKnown RBP12.65□□□□□ -0.38
CUX1-217ENST00000558836 USPL1Q5W0Q7 1092 aa12.65□□□□□ -0.38
CUX1-217ENST00000558836 MARCH10Q8NA82 808 aaPredicted RBP12.65□□□□□ -0.38
CUX1-217ENST00000558836 OSBP2Q969R2 916 aa12.65□□□□□ -0.38
CUX1-217ENST00000558836 NAP1L2Q9ULW6 460 aaPredicted RBP12.65□□□□□ -0.38
CUX1-217ENST00000558836 MAST3O60307 1309 aa12.65□□□□□ -0.38
CUX1-217ENST00000558836 HSPD1P10809 573 aaKnown RBP12.65□□□□□ -0.38
CUX1-217ENST00000558836 HAND2P61296 217 aa12.65□□□□□ -0.38
CUX1-217ENST00000558836 BRF1Q92994 677 aa12.65□□□□□ -0.38
CUX1-217ENST00000558836 DDX11Q96FC9 970 aa12.65□□□□□ -0.38
CUX1-217ENST00000558836 GPR108Q9NPR9 543 aa12.65□□□□□ -0.38
CUX1-217ENST00000558836 FOSBP53539 338 aa12.64□□□□□ -0.39
CUX1-217ENST00000558836 ZNF445P59923 1031 aa12.64□□□□□ -0.39
CUX1-217ENST00000558836 CDC37L1Q7L3B6 337 aa12.64□□□□□ -0.39
CUX1-217ENST00000558836 HMG20BQ9P0W2 317 aa12.64□□□□□ -0.39
CUX1-217ENST00000558836 RNF113AO15541 343 aaKnown RBP12.64□□□□□ -0.39
CUX1-217ENST00000558836 CTSWP56202 376 aa12.64□□□□□ -0.39
CUX1-217ENST00000558836 U3KPZ7 1027 aaPredicted RBP12.64□□□□□ -0.39
CUX1-217ENST00000558836 EP400Q96L91 3159 aa12.64□□□□□ -0.39
CUX1-217ENST00000558836 ATP2B3Q16720 1220 aa12.63□□□□□ -0.39
CUX1-217ENST00000558836 ZMYM1Q5SVZ6 1142 aa12.63□□□□□ -0.39
CUX1-217ENST00000558836 RIPOR2Q9Y4F9 1068 aa12.63□□□□□ -0.39
CUX1-217ENST00000558836 SPATA31A1Q5TZJ5 1347 aa12.63□□□□□ -0.39
CUX1-217ENST00000558836 ISY1Q9ULR0 285 aaKnown RBP12.63□□□□□ -0.39
CUX1-217ENST00000558836 ANKRD18BA2A2Z9 1011 aa12.63□□□□□ -0.39
CUX1-217ENST00000558836 CRKLP46109 303 aaKnown RBP12.63□□□□□ -0.39
CUX1-217ENST00000558836 ITPK1Q13572 414 aa12.63□□□□□ -0.39
CUX1-217ENST00000558836 INTS5Q6P9B9 1019 aaKnown RBP12.63□□□□□ -0.39
CUX1-217ENST00000558836 PUS7LQ9H0K6 701 aaKnown RBP12.63□□□□□ -0.39
CUX1-217ENST00000558836 AKAP2Q9Y2D5 859 aa12.63□□□□□ -0.39
CUX1-217ENST00000558836 JCADQ9P266 1359 aa12.63□□□□□ -0.39
CUX1-217ENST00000558836 SH3TC1Q8TE82 1336 aa12.62□□□□□ -0.39
CUX1-217ENST00000558836 MBD3O95983 291 aa12.62□□□□□ -0.39
CUX1-217ENST00000558836 MCAMP43121 646 aa12.62□□□□□ -0.39
CUX1-217ENST00000558836 CCT2P78371 535 aaKnown RBP12.62□□□□□ -0.39
CUX1-217ENST00000558836 TSGA10IPQ3SY00 556 aa12.62□□□□□ -0.39
CUX1-217ENST00000558836 SUSD4Q5VX71 490 aa12.62□□□□□ -0.39
CUX1-217ENST00000558836 SEC31BQ9NQW1 1179 aa12.62□□□□□ -0.39
CUX1-217ENST00000558836 GPHNQ9NQX3 736 aaPredicted RBP12.62□□□□□ -0.39
CUX1-217ENST00000558836 HELLSQ9NRZ9 838 aa12.62□□□□□ -0.39
CUX1-217ENST00000558836 IL6STP40189 918 aaPredicted RBP12.62□□□□□ -0.39
CUX1-217ENST00000558836 APOBRQ0VD83 1088 aa12.62□□□□□ -0.39
CUX1-217ENST00000558836 PLA2G12BQ9BX93 195 aa12.62□□□□□ -0.39
CUX1-217ENST00000558836 PALLDQ8WX93 1383 aa12.61□□□□□ -0.39
CUX1-217ENST00000558836 COL16A1Q07092 1604 aaPredicted RBP12.61□□□□□ -0.39
CUX1-217ENST00000558836 LOC102724428A0A0B4J2F2 783 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms