RNA–Protein interactions for RNA: ENST00000558790.5

SPG11-212, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 858 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-212ENST00000558790 SPIRE2Q8WWL2 714 aa13.09□□□□□ -0.31
SPG11-212ENST00000558790 AIDAQ96BJ3 306 aa13.09□□□□□ -0.31
SPG11-212ENST00000558790 GLTPD2A6NH11 291 aa13.08□□□□□ -0.32
SPG11-212ENST00000558790 NUTM1Q86Y26 1132 aa13.08□□□□□ -0.32
SPG11-212ENST00000558790 KIF7Q2M1P5 1343 aa13.08□□□□□ -0.32
SPG11-212ENST00000558790 MTHFSDQ2M296 383 aaKnown RBP13.07□□□□□ -0.32
SPG11-212ENST00000558790 MYSM1Q5VVJ2 828 aa13.07□□□□□ -0.32
SPG11-212ENST00000558790 POLR3EQ9NVU0 708 aa13.07□□□□□ -0.32
SPG11-212ENST00000558790 SERPINB2P05120 415 aa13.06□□□□□ -0.32
SPG11-212ENST00000558790 LMNB1P20700 586 aa13.06□□□□□ -0.32
SPG11-212ENST00000558790 CASP8AP2Q9UKL3 1982 aa13.06□□□□□ -0.32
SPG11-212ENST00000558790 LAMB4A4D0S4 1761 aa13.06□□□□□ -0.32
SPG11-212ENST00000558790 NFKBIEO00221 500 aa13.05□□□□□ -0.32
SPG11-212ENST00000558790 KDM4AO75164 1064 aa13.05□□□□□ -0.32
SPG11-212ENST00000558790 CANXP27824 592 aaKnown RBP13.05□□□□□ -0.32
SPG11-212ENST00000558790 THSD4Q6ZMP0 1018 aa13.05□□□□□ -0.32
SPG11-212ENST00000558790 C2CD5Q86YS7 1000 aa13.05□□□□□ -0.32
SPG11-212ENST00000558790 TTLL6Q8N841 843 aa13.05□□□□□ -0.32
SPG11-212ENST00000558790 PPP4CP60510 307 aa13.04□□□□□ -0.32
SPG11-212ENST00000558790 SH3D19Q5HYK7 790 aa13.04□□□□□ -0.32
SPG11-212ENST00000558790 BICDL1Q6ZP65 573 aa13.04□□□□□ -0.32
SPG11-212ENST00000558790 SCN4AP35499 1836 aa13.04□□□□□ -0.32
SPG11-212ENST00000558790 DLG5Q8TDM6 1919 aa13.03□□□□□ -0.32
SPG11-212ENST00000558790 MOXD2PA6NHM9 499 aa13.03□□□□□ -0.32
SPG11-212ENST00000558790 DIAPH1O60610 1272 aaKnown RBP13.03□□□□□ -0.32
SPG11-212ENST00000558790 EIF5P55010 431 aaKnown RBP13.03□□□□□ -0.32
SPG11-212ENST00000558790 TBC1D9BQ66K14 1250 aa13.03□□□□□ -0.32
SPG11-212ENST00000558790 TTC5Q8N0Z6 440 aa13.03□□□□□ -0.32
SPG11-212ENST00000558790 HLA-CQ95604 372 aa13.03□□□□□ -0.32
SPG11-212ENST00000558790 RSPH6AQ9H0K4 717 aa13.03□□□□□ -0.32
SPG11-212ENST00000558790 TSR3Q9UJK0 312 aaKnown RBP13.03□□□□□ -0.32
SPG11-212ENST00000558790 HEG1Q9ULI3 1381 aa13.03□□□□□ -0.32
SPG11-212ENST00000558790 H0YIN7 160 aa13.02□□□□□ -0.33
SPG11-212ENST00000558790 NDUFV2P19404 249 aa13.02□□□□□ -0.33
SPG11-212ENST00000558790 FUT2Q10981 343 aa13.02□□□□□ -0.33
SPG11-212ENST00000558790 CC2D1BQ5T0F9 858 aaKnown RBP13.02□□□□□ -0.33
SPG11-212ENST00000558790 ZNF496Q96IT1 587 aaPredicted RBP13.02□□□□□ -0.33
SPG11-212ENST00000558790 PASKQ96RG2 1323 aa13.02□□□□□ -0.33
SPG11-212ENST00000558790 STARD3NLO95772 234 aa13.01□□□□□ -0.33
SPG11-212ENST00000558790 PRR5LQ6MZQ0 368 aa13.01□□□□□ -0.33
SPG11-212ENST00000558790 PROCA1Q8NCQ7 364 aaPredicted RBP13.01□□□□□ -0.33
SPG11-212ENST00000558790 LIMD1Q9UGP4 676 aa13.01□□□□□ -0.33
SPG11-212ENST00000558790 ZNF330Q9Y3S2 320 aaPredicted RBP13.01□□□□□ -0.33
SPG11-212ENST00000558790 NUP98P52948 1817 aa13□□□□□ -0.33
SPG11-212ENST00000558790 LTBP1Q14766 1721 aa13□□□□□ -0.33
SPG11-212ENST00000558790 A0A087WZG4 1122 aa13□□□□□ -0.33
SPG11-212ENST00000558790 PER1O15534 1290 aaPredicted RBP13□□□□□ -0.33
SPG11-212ENST00000558790 GUCA2AQ02747 115 aa13□□□□□ -0.33
SPG11-212ENST00000558790 SKIV2LQ15477 1246 aaKnown RBP13□□□□□ -0.33
SPG11-212ENST00000558790 KMT5BQ4FZB7 885 aa13□□□□□ -0.33
SPG11-212ENST00000558790 ZNF790Q6PG37 636 aa13□□□□□ -0.33
SPG11-212ENST00000558790 CCDC24Q8N4L8 307 aa13□□□□□ -0.33
SPG11-212ENST00000558790 THSD7BQ9C0I4 1608 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 CEMIPQ8WUJ3 1361 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 HOXA2O43364 376 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 C21orf2O43822 256 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 CLK2P49760 499 aaKnown RBP12.99□□□□□ -0.33
SPG11-212ENST00000558790 PTPN5P54829 565 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 TEFQ10587 303 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 DIXDC1Q155Q3 683 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 IL17REQ8NFR9 667 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 CCER1Q8TC90 406 aaPredicted RBP12.99□□□□□ -0.33
SPG11-212ENST00000558790 ZNF622Q969S3 477 aaKnown RBP eCLIP12.99□□□□□ -0.33
SPG11-212ENST00000558790 PCMTD1Q96MG8 357 aaPredicted RBP12.99□□□□□ -0.33
SPG11-212ENST00000558790 TBC1D2BQ9UPU7 963 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 KDM3BQ7LBC6 1761 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 ADAMTSL1Q8N6G6 1762 aa12.99□□□□□ -0.33
SPG11-212ENST00000558790 NPC1L1Q9UHC9 1359 aa12.98□□□□□ -0.33
SPG11-212ENST00000558790 GNAT3A8MTJ3 354 aa12.98□□□□□ -0.33
SPG11-212ENST00000558790 U2SURPO15042 1029 aaKnown RBP12.98□□□□□ -0.33
SPG11-212ENST00000558790 PDE6BP35913 854 aa12.98□□□□□ -0.33
SPG11-212ENST00000558790 IL6STP40189 918 aaPredicted RBP12.98□□□□□ -0.33
SPG11-212ENST00000558790 PUS10Q3MIT2 529 aaKnown RBP12.98□□□□□ -0.33
SPG11-212ENST00000558790 RIC3Q7Z5B4 369 aa12.98□□□□□ -0.33
SPG11-212ENST00000558790 GAS2L2Q8NHY3 880 aa12.98□□□□□ -0.33
SPG11-212ENST00000558790 BRIP1Q9BX63 1249 aa12.98□□□□□ -0.33
SPG11-212ENST00000558790 GOPCQ9HD26 462 aa12.98□□□□□ -0.33
SPG11-212ENST00000558790 LTBP3Q9NS15 1303 aa12.97□□□□□ -0.33
SPG11-212ENST00000558790 CAMTA2O94983 1202 aa12.97□□□□□ -0.33
SPG11-212ENST00000558790 CSPP1Q1MSJ5 1256 aa12.97□□□□□ -0.33
SPG11-212ENST00000558790 ERFEQ4G0M1 354 aa12.97□□□□□ -0.33
SPG11-212ENST00000558790 RSBN1LQ6PCB5 846 aaPredicted RBP12.97□□□□□ -0.33
SPG11-212ENST00000558790 SPNS2Q8IVW8 549 aa12.97□□□□□ -0.33
SPG11-212ENST00000558790 CNBD1Q8NA66 436 aa12.97□□□□□ -0.33
SPG11-212ENST00000558790 NECTIN2Q92692 538 aa12.97□□□□□ -0.33
SPG11-212ENST00000558790 TAOK3Q9H2K8 898 aa12.97□□□□□ -0.33
SPG11-212ENST00000558790 A1BGP04217 495 aa12.96□□□□□ -0.33
SPG11-212ENST00000558790 USP46P62068 366 aa12.96□□□□□ -0.33
SPG11-212ENST00000558790 CNGB1Q14028 1251 aaPredicted RBP12.96□□□□□ -0.33
SPG11-212ENST00000558790 PRPF40BQ6NWY9 871 aaKnown RBP12.96□□□□□ -0.33
SPG11-212ENST00000558790 FMNL2Q96PY5 1086 aa12.96□□□□□ -0.33
SPG11-212ENST00000558790 TEX13AQ9BXU3 409 aaPredicted RBP12.96□□□□□ -0.33
SPG11-212ENST00000558790 MCOLN1Q9GZU1 580 aa12.96□□□□□ -0.33
SPG11-212ENST00000558790 PDZRN3Q9UPQ7 1066 aa12.96□□□□□ -0.33
SPG11-212ENST00000558790 TMEM88BA6NKF7 163 aa12.95□□□□□ -0.34
SPG11-212ENST00000558790 KCNQ3O43525 872 aa12.95□□□□□ -0.34
SPG11-212ENST00000558790 ACTN4O43707 911 aaKnown RBP12.95□□□□□ -0.34
SPG11-212ENST00000558790 ITGBL1O95965 494 aaPredicted RBP12.95□□□□□ -0.34
SPG11-212ENST00000558790 PIP4K2AP48426 406 aaPredicted RBP12.95□□□□□ -0.34
SPG11-212ENST00000558790 GTF3C3Q9Y5Q9 886 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms