RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 FMR1Q06787 632 aaKnown RBP eCLIP7.83□□□□□ -1.16
VPS33B-207ENST00000557470 CNGB1Q14028 1251 aaPredicted RBP7.83□□□□□ -1.16
VPS33B-207ENST00000557470 HLFQ16534 295 aa7.83□□□□□ -1.16
VPS33B-207ENST00000557470 SLC51AQ86UW1 340 aa7.83□□□□□ -1.16
VPS33B-207ENST00000557470 PSMD1Q99460 953 aa7.83□□□□□ -1.16
VPS33B-207ENST00000557470 ADAM33Q9BZ11 813 aa7.83□□□□□ -1.16
VPS33B-207ENST00000557470 DDX21Q9NR30 783 aaKnown RBP eCLIP7.83□□□□□ -1.16
VPS33B-207ENST00000557470 LTBP1Q14766 1721 aa7.83□□□□□ -1.16
VPS33B-207ENST00000557470 ABCC12Q96J65 1359 aa7.83□□□□□ -1.16
VPS33B-207ENST00000557470 TK2O00142 265 aa7.82□□□□□ -1.16
VPS33B-207ENST00000557470 PDIA4P13667 645 aaKnown RBP7.82□□□□□ -1.16
VPS33B-207ENST00000557470 ALDH1B1P30837 517 aa7.82□□□□□ -1.16
VPS33B-207ENST00000557470 CRY2Q49AN0 593 aa7.82□□□□□ -1.16
VPS33B-207ENST00000557470 MCM10Q7L590 875 aa7.82□□□□□ -1.16
VPS33B-207ENST00000557470 JDP2Q8WYK2 163 aa7.82□□□□□ -1.16
VPS33B-207ENST00000557470 CAPNS2Q96L46 248 aa7.82□□□□□ -1.16
VPS33B-207ENST00000557470 PCDHGA10Q9Y5H3 936 aa7.82□□□□□ -1.16
VPS33B-207ENST00000557470 GJA3Q9Y6H8 435 aa7.82□□□□□ -1.16
VPS33B-207ENST00000557470 NPC1L1Q9UHC9 1359 aa7.82□□□□□ -1.16
VPS33B-207ENST00000557470 TRAF5O00463 557 aa7.81□□□□□ -1.16
VPS33B-207ENST00000557470 GTF2E1P29083 439 aaPredicted RBP7.81□□□□□ -1.16
VPS33B-207ENST00000557470 LMOD1P29536 600 aaPredicted RBP7.81□□□□□ -1.16
VPS33B-207ENST00000557470 EPS15P42566 896 aa7.81□□□□□ -1.16
VPS33B-207ENST00000557470 SCNN1DP51172 638 aa7.81□□□□□ -1.16
VPS33B-207ENST00000557470 EIF6P56537 245 aaKnown RBP7.81□□□□□ -1.16
VPS33B-207ENST00000557470 GRM1Q13255 1194 aa7.81□□□□□ -1.16
VPS33B-207ENST00000557470 CYP4F22Q6NT55 531 aa7.81□□□□□ -1.16
VPS33B-207ENST00000557470 NUTM1Q86Y26 1132 aa7.81□□□□□ -1.16
VPS33B-207ENST00000557470 ZC3H15Q8WU90 426 aaKnown RBP7.81□□□□□ -1.16
VPS33B-207ENST00000557470 ZDHHC16Q969W1 377 aa7.81□□□□□ -1.16
VPS33B-207ENST00000557470 CCDC85CA6NKD9 419 aa7.8□□□□□ -1.16
VPS33B-207ENST00000557470 ECE1P42892 770 aa7.8□□□□□ -1.16
VPS33B-207ENST00000557470 DCTN1Q14203 1278 aa7.8□□□□□ -1.16
VPS33B-207ENST00000557470 CST9Q5W186 159 aa7.8□□□□□ -1.16
VPS33B-207ENST00000557470 LARGE2Q8N3Y3 721 aa7.8□□□□□ -1.16
VPS33B-207ENST00000557470 RTF1Q92541 710 aaKnown RBP7.8□□□□□ -1.16
VPS33B-207ENST00000557470 GPR101Q96P66 508 aaPredicted RBP7.8□□□□□ -1.16
VPS33B-207ENST00000557470 BEGAINQ9BUH8 593 aa7.8□□□□□ -1.16
VPS33B-207ENST00000557470 SLC24A3Q9HC58 644 aa7.8□□□□□ -1.16
VPS33B-207ENST00000557470 TSKSQ9UJT2 592 aa7.8□□□□□ -1.16
VPS33B-207ENST00000557470 VPS9D1Q9Y2B5 631 aa7.8□□□□□ -1.16
VPS33B-207ENST00000557470 RIC1Q4ADV7 1423 aa7.79□□□□□ -1.16
VPS33B-207ENST00000557470 AOC2O75106 756 aa7.79□□□□□ -1.16
VPS33B-207ENST00000557470 PTPREP23469 700 aa7.79□□□□□ -1.16
VPS33B-207ENST00000557470 HOXA10P31260 410 aaPredicted RBP7.79□□□□□ -1.16
VPS33B-207ENST00000557470 MLLT1Q03111 559 aaPredicted RBP7.79□□□□□ -1.16
VPS33B-207ENST00000557470 CC2D2BQ6DHV5 1058 aa7.79□□□□□ -1.16
VPS33B-207ENST00000557470 USP50Q70EL3 339 aaPredicted RBP7.79□□□□□ -1.16
VPS33B-207ENST00000557470 NGEFQ8N5V2 710 aa7.79□□□□□ -1.16
VPS33B-207ENST00000557470 RPGRQ92834 1020 aaKnown RBP7.79□□□□□ -1.16
VPS33B-207ENST00000557470 NYXQ9GZU5 481 aa7.79□□□□□ -1.16
VPS33B-207ENST00000557470 MIS18AQ9NYP9 233 aa7.79□□□□□ -1.16
VPS33B-207ENST00000557470 TLL2Q9Y6L7 1015 aa7.79□□□□□ -1.16
VPS33B-207ENST00000557470 UBN2Q6ZU65 1347 aa7.78□□□□□ -1.16
VPS33B-207ENST00000557470 ERVV-1B6SEH8 477 aa7.78□□□□□ -1.16
VPS33B-207ENST00000557470 TCERG1O14776 1098 aaKnown RBP7.78□□□□□ -1.16
VPS33B-207ENST00000557470 PPEF1O14829 653 aaPredicted RBP7.78□□□□□ -1.16
VPS33B-207ENST00000557470 U2AF1L5P0DN76 240 aaPredicted RBP7.78□□□□□ -1.16
VPS33B-207ENST00000557470 GPTP24298 496 aa7.78□□□□□ -1.16
VPS33B-207ENST00000557470 RGS19P49795 217 aa7.78□□□□□ -1.16
VPS33B-207ENST00000557470 U2AF1Q01081 240 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS33B-207ENST00000557470 NIM1KQ8IY84 436 aa7.78□□□□□ -1.16
VPS33B-207ENST00000557470 CFAP53Q96M91 514 aa7.78□□□□□ -1.16
VPS33B-207ENST00000557470 LAMB4A4D0S4 1761 aa7.78□□□□□ -1.16
VPS33B-207ENST00000557470 TNRC18O15417 2968 aaPredicted RBP7.78□□□□□ -1.16
VPS33B-207ENST00000557470 MAP3K15Q6ZN16 1313 aa7.78□□□□□ -1.16
VPS33B-207ENST00000557470 TRPM7Q96QT4 1865 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 IBTKQ9P2D0 1353 aaPredicted RBP7.77□□□□□ -1.17
VPS33B-207ENST00000557470 PPIP5K2O43314 1243 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 CELF2O95319 508 aaKnown RBP7.77□□□□□ -1.17
VPS33B-207ENST00000557470 MAP2K2P36507 400 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 TAF7Q15545 349 aaPredicted RBP7.77□□□□□ -1.17
VPS33B-207ENST00000557470 AOC3Q16853 763 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 GRIPAP1Q4V328 841 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 SUSD4Q5VX71 490 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 TTLL7Q6ZT98 887 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 SAPCD2Q86UD0 394 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 RBM17Q96I25 401 aaKnown RBP7.77□□□□□ -1.17
VPS33B-207ENST00000557470 CRAMP1Q96RY5 1269 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 ZBED2Q9BTP6 218 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 GLIS2Q9BZE0 524 aaPredicted RBP7.77□□□□□ -1.17
VPS33B-207ENST00000557470 ZBTB3Q9H5J0 574 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 ADARB2Q9NS39 739 aaKnown RBP7.77□□□□□ -1.17
VPS33B-207ENST00000557470 WDR70Q9NW82 654 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 GPRC5DQ9NZD1 345 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 NUDCQ9Y266 331 aa7.77□□□□□ -1.17
VPS33B-207ENST00000557470 NUP98P52948 1817 aa7.76□□□□□ -1.17
VPS33B-207ENST00000557470 HTATSF1O43719 755 aaKnown RBP7.76□□□□□ -1.17
VPS33B-207ENST00000557470 NTSR2O95665 410 aa7.76□□□□□ -1.17
VPS33B-207ENST00000557470 MYL6BP14649 208 aa7.76□□□□□ -1.17
VPS33B-207ENST00000557470 GMPSP49915 693 aaPredicted RBP7.76□□□□□ -1.17
VPS33B-207ENST00000557470 CXCL9Q07325 125 aa7.76□□□□□ -1.17
VPS33B-207ENST00000557470 KIF6Q6ZMV9 814 aa7.76□□□□□ -1.17
VPS33B-207ENST00000557470 CCER1Q8TC90 406 aaPredicted RBP7.76□□□□□ -1.17
VPS33B-207ENST00000557470 KCNV2Q8TDN2 545 aa7.76□□□□□ -1.17
VPS33B-207ENST00000557470 DDX12PQ92771 950 aa7.76□□□□□ -1.17
VPS33B-207ENST00000557470 MCOLN1Q9GZU1 580 aa7.76□□□□□ -1.17
VPS33B-207ENST00000557470 RRP7AQ9Y3A4 280 aaKnown RBP7.76□□□□□ -1.17
VPS33B-207ENST00000557470 CA12O43570 354 aa7.75□□□□□ -1.17
VPS33B-207ENST00000557470 COL9A1P20849 921 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms