RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 TM6SF1Q9BZW5 370 aa15.18■□□□□ 0.02
SHMT2-229ENST00000557348 QTRT2Q9H974 415 aaKnown RBP15.18■□□□□ 0.02
SHMT2-229ENST00000557348 HMG20BQ9P0W2 317 aa15.18■□□□□ 0.02
SHMT2-229ENST00000557348 RIPOR2Q9Y4F9 1068 aa15.18■□□□□ 0.02
SHMT2-229ENST00000557348 MED23Q9ULK4 1368 aa15.18■□□□□ 0.02
SHMT2-229ENST00000557348 IFIT1P09914 478 aaKnown RBP15.17■□□□□ 0.02
SHMT2-229ENST00000557348 XRCC6P12956 609 aaKnown RBP eCLIP15.17■□□□□ 0.02
SHMT2-229ENST00000557348 SUSD4Q5VX71 490 aa15.17■□□□□ 0.02
SHMT2-229ENST00000557348 KCNB2Q92953 911 aa15.17■□□□□ 0.02
SHMT2-229ENST00000557348 DNAJC2Q99543 621 aaKnown RBP15.17■□□□□ 0.02
SHMT2-229ENST00000557348 NYXQ9GZU5 481 aa15.17■□□□□ 0.02
SHMT2-229ENST00000557348 GREM2Q9H772 168 aa15.17■□□□□ 0.02
SHMT2-229ENST00000557348 PAG1Q9NWQ8 432 aa15.17■□□□□ 0.02
SHMT2-229ENST00000557348 CCNL1Q9UK58 526 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-229ENST00000557348 LAMB2P55268 1798 aa15.17■□□□□ 0.02
SHMT2-229ENST00000557348 BTAF1O14981 1849 aa15.17■□□□□ 0.02
SHMT2-229ENST00000557348 SCN7AQ01118 1682 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 NTSR2O95665 410 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 ZFYP08048 801 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-229ENST00000557348 PSMA5P28066 241 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 ATP2B3Q16720 1220 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 TTC39AQ5SRH9 613 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 PUS3Q9BZE2 481 aaKnown RBP15.16■□□□□ 0.02
SHMT2-229ENST00000557348 BCL11BQ9C0K0 894 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-229ENST00000557348 HELLSQ9NRZ9 838 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 CD2BP2O95400 341 aaKnown RBP15.16■□□□□ 0.02
SHMT2-229ENST00000557348 KCNJ4P48050 445 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 RBM6P78332 1123 aaKnown RBP15.16■□□□□ 0.02
SHMT2-229ENST00000557348 SEPT12Q8IYM1 358 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 MAP4K1Q92918 833 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 PKNOX2Q96KN3 472 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 CDC5LQ99459 802 aaKnown RBP15.16■□□□□ 0.02
SHMT2-229ENST00000557348 NARFQ9UHQ1 456 aa15.16■□□□□ 0.02
SHMT2-229ENST00000557348 RTCBQ9Y3I0 505 aaKnown RBP15.16■□□□□ 0.02
SHMT2-229ENST00000557348 RIC1Q4ADV7 1423 aa15.15■□□□□ 0.02
SHMT2-229ENST00000557348 TIMM10P62072 90 aa15.15■□□□□ 0.02
SHMT2-229ENST00000557348 NUCB2P80303 420 aa15.15■□□□□ 0.02
SHMT2-229ENST00000557348 INTS4Q96HW7 963 aaKnown RBP15.15■□□□□ 0.02
SHMT2-229ENST00000557348 MPHOSPH8Q99549 860 aa15.15■□□□□ 0.02
SHMT2-229ENST00000557348 IL25Q9H293 177 aa15.15■□□□□ 0.02
SHMT2-229ENST00000557348 SNX14Q9Y5W7 946 aa15.15■□□□□ 0.02
SHMT2-229ENST00000557348 MYH14Q7Z406 1995 aaKnown RBP15.15■□□□□ 0.02
SHMT2-229ENST00000557348 ZPR1O75312 459 aa15.14■□□□□ 0.01
SHMT2-229ENST00000557348 PDE8BO95263 885 aa15.14■□□□□ 0.01
SHMT2-229ENST00000557348 ADRA2BP18089 450 aa15.14■□□□□ 0.01
SHMT2-229ENST00000557348 IGHMBP2P38935 993 aaKnown RBP15.14■□□□□ 0.01
SHMT2-229ENST00000557348 KRT32Q14532 448 aa15.14■□□□□ 0.01
SHMT2-229ENST00000557348 TTF1Q15361 905 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-229ENST00000557348 PUM3Q15397 648 aaKnown RBP15.14■□□□□ 0.01
SHMT2-229ENST00000557348 MCMDC2Q4G0Z9 681 aa15.14■□□□□ 0.01
SHMT2-229ENST00000557348 LPIN2Q92539 896 aa15.14■□□□□ 0.01
SHMT2-229ENST00000557348 XAGE2Q96GT9 111 aa15.14■□□□□ 0.01
SHMT2-229ENST00000557348 PALD1Q9ULE6 856 aa15.14■□□□□ 0.01
SHMT2-229ENST00000557348 U3KPZ7 1027 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-229ENST00000557348 A0A0D9SFI3 127 aa15.13■□□□□ 0.01
SHMT2-229ENST00000557348 UQCRFS1P1P0C7P4 283 aa15.13■□□□□ 0.01
SHMT2-229ENST00000557348 SSFA2P28290 1259 aa15.13■□□□□ 0.01
SHMT2-229ENST00000557348 NECTIN1Q15223 517 aa15.13■□□□□ 0.01
SHMT2-229ENST00000557348 FAM196AQ6ZSG2 479 aa15.13■□□□□ 0.01
SHMT2-229ENST00000557348 SPRYD3Q8NCJ5 442 aa15.13■□□□□ 0.01
SHMT2-229ENST00000557348 FAM227BQ96M60 508 aa15.13■□□□□ 0.01
SHMT2-229ENST00000557348 GBP4Q96PP9 640 aa15.13■□□□□ 0.01
SHMT2-229ENST00000557348 LY75O60449 1722 aa15.13■□□□□ 0.01
SHMT2-229ENST00000557348 SLC5A1P13866 664 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 TSGA10IPQ3SY00 556 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 ZSCAN25Q6NSZ9 544 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 SYNE4Q8N205 404 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 VGLL2Q8N8G2 317 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.12■□□□□ 0.016e-7■■□□□ 14.2
SHMT2-229ENST00000557348 RBM8AQ9Y5S9 174 aaKnown RBP15.12■□□□□ 0.01
SHMT2-229ENST00000557348 GOLIM4O00461 696 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 GNPATO15228 680 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 TRAK2O60296 914 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 RAB3GAP1Q15042 981 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 SF3B3Q15393 1217 aaKnown RBP15.12■□□□□ 0.01
SHMT2-229ENST00000557348 SLC27A3Q5K4L6 730 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 SLC10A5Q5PT55 438 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 USPL1Q5W0Q7 1092 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 CCDC85AQ96PX6 553 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-229ENST00000557348 MAP7D2Q96T17 732 aa15.12■□□□□ 0.01
SHMT2-229ENST00000557348 ESPNB1AK53 854 aa15.11■□□□□ 0.01
SHMT2-229ENST00000557348 TAF5LO75529 589 aa15.11■□□□□ 0.01
SHMT2-229ENST00000557348 HCLS1P14317 486 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-229ENST00000557348 PTH1RQ03431 593 aa15.11■□□□□ 0.01
SHMT2-229ENST00000557348 CUL4AQ13619 759 aa15.11■□□□□ 0.01
SHMT2-229ENST00000557348 ZMYM1Q5SVZ6 1142 aa15.11■□□□□ 0.01
SHMT2-229ENST00000557348 VPS53Q5VIR6 699 aa15.11■□□□□ 0.01
SHMT2-229ENST00000557348 DDX46Q7L014 1031 aaKnown RBP15.11■□□□□ 0.01
SHMT2-229ENST00000557348 NAP1L5Q96NT1 182 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-229ENST00000557348 SETDB2Q96T68 719 aa15.11■□□□□ 0.01
SHMT2-229ENST00000557348 DSCC1Q9BVC3 393 aa15.11■□□□□ 0.01
SHMT2-229ENST00000557348 CYP46A1Q9Y6A2 500 aa15.11■□□□□ 0.01
SHMT2-229ENST00000557348 RNF113AO15541 343 aaKnown RBP15.1■□□□□ 0.01
SHMT2-229ENST00000557348 ANKRD1Q15327 319 aa15.1■□□□□ 0.01
SHMT2-229ENST00000557348 CREB3L3Q68CJ9 461 aa15.1■□□□□ 0.01
SHMT2-229ENST00000557348 PRPF40BQ6NWY9 871 aaKnown RBP15.1■□□□□ 0.01
SHMT2-229ENST00000557348 TMX3Q96JJ7 454 aa15.1■□□□□ 0.01
SHMT2-229ENST00000557348 ZSCAN31Q96LW9 406 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-229ENST00000557348 GRPEL1Q9HAV7 217 aa15.1■□□□□ 0.01
SHMT2-229ENST00000557348 ZSWIM6Q9HCJ5 1215 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms