RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 ZNF396Q96N95 335 aaPredicted RBP14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 ORC3Q9UBD5 711 aaPredicted RBP14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 NPHP3Q7Z494 1330 aa14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 IFIT5Q13325 482 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 IMMTQ16891 758 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 PDCL3Q9H2J4 239 aa14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 ABCF2Q9UG63 623 aa14.24□□□□□ -0.13
CCDC88C-211ENST00000556726 TPM4P67936 248 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 MAP4K1Q92918 833 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 GJB4Q9NTQ9 266 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 TBC1D2BQ9UPU7 963 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 CYP21A2P08686 494 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 HOXB7P09629 217 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 CDK11BP21127 795 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 PYCARDQ9ULZ3 195 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 USP31Q70CQ4 1352 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 TNNT1P13805 278 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 NECTIN1Q15223 517 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 BICDL1Q6ZP65 573 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 TTC14Q96N46 770 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 CBX8Q9HC52 389 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 TMOD3Q9NYL9 352 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 KDRP35968 1356 aa14.23□□□□□ -0.13
CCDC88C-211ENST00000556726 TAF5LO75529 589 aa14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 PHKG2P15735 406 aa14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 TRMT112Q9UI30 125 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 USP32Q8NFA0 1604 aa14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 HMGN5P82970 282 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 LRRFIP1Q32MZ4 808 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 RASSF8Q8NHQ8 419 aa14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 ZCRB1Q8TBF4 217 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 BABAM1Q9NWV8 329 aa14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 ZNF213O14771 459 aa14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 CLEC17AQ6ZS10 378 aa14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 AOPEPQ8N6M6 819 aa14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 MYL10Q9BUA6 226 aa14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 DDX19AQ9NUU7 478 aaKnown RBP14.22□□□□□ -0.13
CCDC88C-211ENST00000556726 A0A0G2JLW4 131 aa14.21□□□□□ -0.13
CCDC88C-211ENST00000556726 PTPN21Q16825 1174 aa14.21□□□□□ -0.13
CCDC88C-211ENST00000556726 HMG20BQ9P0W2 317 aa14.21□□□□□ -0.13
CCDC88C-211ENST00000556726 VPS37DQ86XT2 251 aa14.21□□□□□ -0.13
CCDC88C-211ENST00000556726 ZHX1Q9UKY1 873 aaPredicted RBP14.21□□□□□ -0.13
CCDC88C-211ENST00000556726 SALL3Q9BXA9 1300 aa14.21□□□□□ -0.13
CCDC88C-211ENST00000556726 MINDY4BA8MYZ0 360 aa14.21□□□□□ -0.14
CCDC88C-211ENST00000556726 UVSSAQ2YD98 709 aa14.21□□□□□ -0.14
CCDC88C-211ENST00000556726 CEP57L1Q8IYX8 460 aa14.21□□□□□ -0.14
CCDC88C-211ENST00000556726 SYNE4Q8N205 404 aa14.21□□□□□ -0.14
CCDC88C-211ENST00000556726 CCDC112Q8NEF3 446 aa14.21□□□□□ -0.14
CCDC88C-211ENST00000556726 C19orf44Q9H6X5 657 aa14.21□□□□□ -0.14
CCDC88C-211ENST00000556726 SERPINC1P01008 464 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 PTPN12Q05209 780 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 PPP4R3BQ5MIZ7 849 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 DHX32Q7L7V1 743 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 DCAF5Q96JK2 942 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 DLC1Q96QB1 1528 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 HS1BP3Q53T59 392 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 ZKSCAN3Q9BRR0 538 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 ADORA1P30542 326 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 AKAP17AQ02040 695 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 SLC9C2Q5TAH2 1124 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 PDCL2Q8N4E4 241 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 AIDAQ96BJ3 306 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 MPHOSPH8Q99549 860 aa14.2□□□□□ -0.14
CCDC88C-211ENST00000556726 KIF20BQ96Q89 1820 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 PRC1O43663 620 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 MCM5P33992 734 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 RPAP1Q9BWH6 1393 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 SSH2Q76I76 1423 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 LMOD1P29536 600 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 SCRN1Q12765 414 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 KAZALD1Q96I82 304 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 USP28Q96RU2 1077 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 SNAP23O00161 211 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 TDO2P48775 406 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 SPECC1Q5M775 1068 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 KBTBD3Q8NAB2 608 aa14.19□□□□□ -0.14
CCDC88C-211ENST00000556726 ERBB3P21860 1342 aa14.18□□□□□ -0.14
CCDC88C-211ENST00000556726 RIMS1Q86UR5 1692 aaKnown RBP14.18□□□□□ -0.14
CCDC88C-211ENST00000556726 CYP27B1O15528 508 aa14.18□□□□□ -0.14
CCDC88C-211ENST00000556726 NAT10Q9H0A0 1025 aaKnown RBP14.18□□□□□ -0.14
CCDC88C-211ENST00000556726 NUTM2BA6NNL0 878 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-211ENST00000556726 NUTM2EB1AL46 878 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-211ENST00000556726 ZAP70P43403 619 aa14.18□□□□□ -0.14
CCDC88C-211ENST00000556726 NUTM2AQ8IVF1 878 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-211ENST00000556726 PKNOX2Q96KN3 472 aa14.18□□□□□ -0.14
CCDC88C-211ENST00000556726 DHX16O60231 1041 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 ZNF500O60304 480 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 ATP5JP18859 108 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 TOB2Q14106 344 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 TMC6Q7Z403 805 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 PDLIM2Q96JY6 352 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 TM6SF1Q9BZW5 370 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 IL15P40933 162 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 ATP2B3Q16720 1220 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 ZNF771Q7L3S4 317 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 DNAJC10Q8IXB1 793 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 PHKBQ93100 1093 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 GTF3C6Q969F1 213 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 ACSBG1Q96GR2 724 aa14.17□□□□□ -0.14
CCDC88C-211ENST00000556726 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms