RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 NFKBIEO00221 500 aa12.26□□□□□ -0.45
SRP54-210ENST00000556380 ALDH1L1O75891 902 aa12.26□□□□□ -0.45
SRP54-210ENST00000556380 OLFM4Q6UX06 510 aa12.26□□□□□ -0.45
SRP54-210ENST00000556380 NOB1Q9ULX3 412 aaKnown RBP12.26□□□□□ -0.45
SRP54-210ENST00000556380 ABCC4O15439 1325 aa12.26□□□□□ -0.45
SRP54-210ENST00000556380 SNED1Q8TER0 1413 aa12.26□□□□□ -0.45
SRP54-210ENST00000556380 PDE8AO60658 829 aa12.25□□□□□ -0.45
SRP54-210ENST00000556380 BCAR3O75815 825 aa12.25□□□□□ -0.45
SRP54-210ENST00000556380 HSP90B1P14625 803 aaKnown RBP12.25□□□□□ -0.45
SRP54-210ENST00000556380 UBE3BQ7Z3V4 1068 aa12.25□□□□□ -0.45
SRP54-210ENST00000556380 SLC51AQ86UW1 340 aa12.25□□□□□ -0.45
SRP54-210ENST00000556380 ARHGAP45Q92619 1136 aa12.25□□□□□ -0.45
SRP54-210ENST00000556380 PLA2G12BQ9BX93 195 aa12.25□□□□□ -0.45
SRP54-210ENST00000556380 TAOK2Q9UL54 1235 aa12.25□□□□□ -0.45
SRP54-210ENST00000556380 BBOX1O75936 387 aa12.24□□□□□ -0.45
SRP54-210ENST00000556380 YY1P25490 414 aa12.24□□□□□ -0.45
SRP54-210ENST00000556380 SOGA3Q5TF21 947 aa12.24□□□□□ -0.45
SRP54-210ENST00000556380 CC2D2BQ6DHV5 1058 aa12.24□□□□□ -0.45
SRP54-210ENST00000556380 SLC4A10Q6U841 1118 aa12.24□□□□□ -0.45
SRP54-210ENST00000556380 DDX46Q7L014 1031 aaKnown RBP12.24□□□□□ -0.45
SRP54-210ENST00000556380 DDX60Q8IY21 1712 aaKnown RBP12.24□□□□□ -0.45
SRP54-210ENST00000556380 TTLL11Q8NHH1 800 aa12.24□□□□□ -0.45
SRP54-210ENST00000556380 TMEM121BQ9BXQ6 578 aaPredicted RBP12.24□□□□□ -0.45
SRP54-210ENST00000556380 SRCIN1Q9C0H9 1055 aa12.24□□□□□ -0.45
SRP54-210ENST00000556380 UTYO14607 1347 aa12.23□□□□□ -0.45
SRP54-210ENST00000556380 LTBP3Q9NS15 1303 aa12.23□□□□□ -0.45
SRP54-210ENST00000556380 GRM8O00222 908 aa12.23□□□□□ -0.45
SRP54-210ENST00000556380 CSF1RP07333 972 aa12.23□□□□□ -0.45
SRP54-210ENST00000556380 CTSWP56202 376 aa12.23□□□□□ -0.45
SRP54-210ENST00000556380 RASSF7Q02833 373 aa12.23□□□□□ -0.45
SRP54-210ENST00000556380 GRAPQ13588 217 aa12.23□□□□□ -0.45
SRP54-210ENST00000556380 GRAPLQ8TC17 118 aaPredicted RBP12.23□□□□□ -0.45
SRP54-210ENST00000556380 CELF1Q92879 486 aaKnown RBP12.23□□□□□ -0.45
SRP54-210ENST00000556380 ATP6V0A2Q9Y487 856 aa12.23□□□□□ -0.45
SRP54-210ENST00000556380 RTL9Q8NET4 1388 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 PPEF1O14829 653 aaPredicted RBP12.22□□□□□ -0.45
SRP54-210ENST00000556380 FOXO4P98177 505 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 CCDC152Q4G0S7 254 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 CCDC93Q567U6 631 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 EPHA10Q5JZY3 1008 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 C9orf131Q5VYM1 1079 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 CDAN1Q8IWY9 1227 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 SP8Q8IXZ3 490 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 RTKN2Q8IZC4 609 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 KAZALD1Q96I82 304 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 MS4A4AQ96JQ5 239 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 API5Q9BZZ5 524 aaKnown RBP12.22□□□□□ -0.45
SRP54-210ENST00000556380 USP44Q9H0E7 712 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 SEC31BQ9NQW1 1179 aa12.22□□□□□ -0.45
SRP54-210ENST00000556380 CHD4Q14839 1912 aa12.21□□□□□ -0.45
SRP54-210ENST00000556380 LAMB2P55268 1798 aa12.21□□□□□ -0.45
SRP54-210ENST00000556380 KIF16BQ96L93 1317 aa12.21□□□□□ -0.45
SRP54-210ENST00000556380 NBPF7P0C2Y1 421 aaPredicted RBP12.21□□□□□ -0.45
SRP54-210ENST00000556380 LMNB1P20700 586 aa12.21□□□□□ -0.45
SRP54-210ENST00000556380 RPS8P62241 208 aaKnown RBP12.21□□□□□ -0.45
SRP54-210ENST00000556380 FKBP4Q02790 459 aaKnown RBP eCLIP12.21□□□□□ -0.45
SRP54-210ENST00000556380 PSMD1Q99460 953 aa12.21□□□□□ -0.45
SRP54-210ENST00000556380 TAOK3Q9H2K8 898 aa12.21□□□□□ -0.45
SRP54-210ENST00000556380 STK24Q9Y6E0 443 aa12.21□□□□□ -0.45
SRP54-210ENST00000556380 COL4A1P02462 1669 aa12.21□□□□□ -0.45
SRP54-210ENST00000556380 IPO8O15397 1037 aaKnown RBP12.2□□□□□ -0.46
SRP54-210ENST00000556380 TRIM27P14373 513 aa12.2□□□□□ -0.46
SRP54-210ENST00000556380 GRIPAP1Q4V328 841 aa12.2□□□□□ -0.46
SRP54-210ENST00000556380 TMC4Q7Z404 712 aa12.2□□□□□ -0.46
SRP54-210ENST00000556380 CCDC85AQ96PX6 553 aaPredicted RBP12.2□□□□□ -0.46
SRP54-210ENST00000556380 GREM2Q9H772 168 aa12.2□□□□□ -0.46
SRP54-210ENST00000556380 C9orf78Q9NZ63 289 aaPredicted RBP12.2□□□□□ -0.46
SRP54-210ENST00000556380 TNNQ9UQP3 1299 aa12.2□□□□□ -0.46
SRP54-210ENST00000556380 FER1L6Q2WGJ9 1857 aa12.19□□□□□ -0.46
SRP54-210ENST00000556380 CCT4P50991 539 aaKnown RBP12.19□□□□□ -0.46
SRP54-210ENST00000556380 INTS3Q68E01 1043 aaKnown RBP12.19□□□□□ -0.46
SRP54-210ENST00000556380 ATF7IPQ6VMQ6 1270 aa12.19□□□□□ -0.46
SRP54-210ENST00000556380 ZNF784Q8NCA9 323 aaPredicted RBP12.19□□□□□ -0.46
SRP54-210ENST00000556380 MARVELD3Q96A59 401 aa12.19□□□□□ -0.46
SRP54-210ENST00000556380 SUCLG2Q96I99 432 aa12.19□□□□□ -0.46
SRP54-210ENST00000556380 RTFDC1Q9BY42 306 aaPredicted RBP12.19□□□□□ -0.46
SRP54-210ENST00000556380 RNF181Q9P0P0 153 aa12.19□□□□□ -0.46
SRP54-210ENST00000556380 MICALL2Q8IY33 904 aa12.18□□□□□ -0.46
SRP54-210ENST00000556380 ZNF277Q9NRM2 450 aaPredicted RBP12.18□□□□□ -0.46
SRP54-210ENST00000556380 SBF1O95248 1867 aa12.17□□□□□ -0.46
SRP54-210ENST00000556380 TAF1P21675 1872 aa12.17□□□□□ -0.46
SRP54-210ENST00000556380 STK25O00506 426 aa12.17□□□□□ -0.46
SRP54-210ENST00000556380 ITGA6P23229 1130 aa12.17□□□□□ -0.46
SRP54-210ENST00000556380 FAM161AQ3B820 660 aa12.17□□□□□ -0.46
SRP54-210ENST00000556380 RABL6Q3YEC7 729 aaPredicted RBP12.17□□□□□ -0.46
SRP54-210ENST00000556380 LMBR1LQ6UX01 489 aa12.17□□□□□ -0.46
SRP54-210ENST00000556380 MPNDQ8N594 471 aa12.17□□□□□ -0.46
SRP54-210ENST00000556380 ANKRD44Q8N8A2 993 aa12.17□□□□□ -0.46
SRP54-210ENST00000556380 FRAT1Q92837 279 aaPredicted RBP12.17□□□□□ -0.46
SRP54-210ENST00000556380 BSDC1Q9NW68 430 aaPredicted RBP12.17□□□□□ -0.46
SRP54-210ENST00000556380 ZC3H4Q9UPT8 1303 aaKnown RBP12.16□□□□□ -0.46
SRP54-210ENST00000556380 GPSM2P81274 684 aa12.16□□□□□ -0.46
SRP54-210ENST00000556380 ZKSCAN2Q63HK3 967 aa12.16□□□□□ -0.46
SRP54-210ENST00000556380 ANKRD18AQ8IVF6 992 aa12.16□□□□□ -0.46
SRP54-210ENST00000556380 CDC5LQ99459 802 aaKnown RBP12.16□□□□□ -0.46
SRP54-210ENST00000556380 PODXL2Q9NZ53 605 aa12.16□□□□□ -0.46
SRP54-210ENST00000556380 CACNA1SQ13698 1873 aa12.16□□□□□ -0.46
SRP54-210ENST00000556380 RLBP1P12271 317 aa12.15□□□□□ -0.46
SRP54-210ENST00000556380 IARSP41252 1262 aaKnown RBP12.15□□□□□ -0.46
SRP54-210ENST00000556380 DPP8Q6V1X1 898 aaPredicted RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms