RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 IFIT2P09913 472 aaKnown RBP13.77□□□□□ -0.21
SHMT2-220ENST00000555634 RFX5P48382 616 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-220ENST00000555634 RPS8P62241 208 aaKnown RBP13.77□□□□□ -0.21
SHMT2-220ENST00000555634 NUCB1Q02818 461 aa13.77□□□□□ -0.21
SHMT2-220ENST00000555634 KLHDC4Q8TBB5 520 aa13.77□□□□□ -0.21
SHMT2-220ENST00000555634 RHPN1Q8TCX5 695 aa13.77□□□□□ -0.21
SHMT2-220ENST00000555634 CNKSR1Q969H4 720 aa13.77□□□□□ -0.21
SHMT2-220ENST00000555634 ANKRD2Q9GZV1 360 aa13.77□□□□□ -0.21
SHMT2-220ENST00000555634 PPEF1O14829 653 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-220ENST00000555634 BBOX1O75936 387 aa13.76□□□□□ -0.21
SHMT2-220ENST00000555634 SRGNP10124 158 aa13.76□□□□□ -0.21
SHMT2-220ENST00000555634 ZNF622Q969S3 477 aaKnown RBP eCLIP13.76□□□□□ -0.21
SHMT2-220ENST00000555634 ZNF594Q96JF6 807 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-220ENST00000555634 LNPKQ9C0E8 428 aa13.76□□□□□ -0.21
SHMT2-220ENST00000555634 BSDC1Q9NW68 430 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-220ENST00000555634 KLRG2A4D1S0 409 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-220ENST00000555634 HOXA10P31260 410 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-220ENST00000555634 TGFB2P61812 414 aa13.75□□□□□ -0.21
SHMT2-220ENST00000555634 PUM3Q15397 648 aaKnown RBP13.75□□□□□ -0.21
SHMT2-220ENST00000555634 GORABQ5T7V8 394 aa13.75□□□□□ -0.21
SHMT2-220ENST00000555634 C3orf67Q6ZVT6 689 aa13.75□□□□□ -0.21
SHMT2-220ENST00000555634 SEC31BQ9NQW1 1179 aa13.75□□□□□ -0.21
SHMT2-220ENST00000555634 CD2APQ9Y5K6 639 aa13.75□□□□□ -0.21
SHMT2-220ENST00000555634 SLX4Q8IY92 1834 aa13.74□□□□□ -0.21
SHMT2-220ENST00000555634 LTBP1Q14766 1721 aa13.74□□□□□ -0.21
SHMT2-220ENST00000555634 SLC5A1P13866 664 aa13.74□□□□□ -0.21
SHMT2-220ENST00000555634 SOGA3Q5TF21 947 aa13.74□□□□□ -0.21
SHMT2-220ENST00000555634 AACSQ86V21 672 aa13.74□□□□□ -0.21
SHMT2-220ENST00000555634 GPR108Q9NPR9 543 aa13.74□□□□□ -0.21
SHMT2-220ENST00000555634 ANKIB1Q9P2G1 1089 aa13.74□□□□□ -0.21
SHMT2-220ENST00000555634 DUOX1Q9NRD9 1551 aa13.74□□□□□ -0.21
SHMT2-220ENST00000555634 MYH7P12883 1935 aa13.74□□□□□ -0.21
SHMT2-220ENST00000555634 XDHP47989 1333 aa13.73□□□□□ -0.21
SHMT2-220ENST00000555634 ERC2O15083 957 aa13.73□□□□□ -0.21
SHMT2-220ENST00000555634 IFIT1P09914 478 aaKnown RBP13.73□□□□□ -0.21
SHMT2-220ENST00000555634 TFCP2Q12800 502 aa13.73□□□□□ -0.21
SHMT2-220ENST00000555634 ATP2B3Q16720 1220 aa13.73□□□□□ -0.21
SHMT2-220ENST00000555634 GRIPAP1Q4V328 841 aa13.73□□□□□ -0.21
SHMT2-220ENST00000555634 LRRC24Q50LG9 513 aa13.73□□□□□ -0.21
SHMT2-220ENST00000555634 CELF1Q92879 486 aaKnown RBP13.73□□□□□ -0.21
SHMT2-220ENST00000555634 IL1RAPL2Q9NP60 686 aa13.73□□□□□ -0.21
SHMT2-220ENST00000555634 AOX1Q06278 1338 aa13.72□□□□□ -0.21
SHMT2-220ENST00000555634 PDE8BO95263 885 aa13.72□□□□□ -0.21
SHMT2-220ENST00000555634 MX1P20591 662 aa13.72□□□□□ -0.21
SHMT2-220ENST00000555634 RGS3P49796 1198 aa13.72□□□□□ -0.21
SHMT2-220ENST00000555634 CHRNDQ07001 517 aa13.72□□□□□ -0.21
SHMT2-220ENST00000555634 TNNI3KQ59H18 835 aa13.72□□□□□ -0.21
SHMT2-220ENST00000555634 PRPF40BQ6NWY9 871 aaKnown RBP13.72□□□□□ -0.21
SHMT2-220ENST00000555634 ATG9AQ7Z3C6 839 aa13.72□□□□□ -0.21
SHMT2-220ENST00000555634 FPGT-TNNI3KV9GXZ4 949 aa13.72□□□□□ -0.21
SHMT2-220ENST00000555634 COL4A1P02462 1669 aa13.72□□□□□ -0.21
SHMT2-220ENST00000555634 SMARCA5O60264 1052 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-220ENST00000555634 CCDC158Q5M9N0 1113 aa13.71□□□□□ -0.21
SHMT2-220ENST00000555634 CC2D2BQ6DHV5 1058 aa13.71□□□□□ -0.21
SHMT2-220ENST00000555634 VPS37DQ86XT2 251 aa13.71□□□□□ -0.21
SHMT2-220ENST00000555634 TTLL6Q8N841 843 aa13.71□□□□□ -0.21
SHMT2-220ENST00000555634 LPIN2Q92539 896 aa13.71□□□□□ -0.21
SHMT2-220ENST00000555634 NEUROD6Q96NK8 337 aa13.71□□□□□ -0.21
SHMT2-220ENST00000555634 PUS3Q9BZE2 481 aaKnown RBP13.71□□□□□ -0.21
SHMT2-220ENST00000555634 RIPOR2Q9Y4F9 1068 aa13.71□□□□□ -0.21
SHMT2-220ENST00000555634 CCDC88AQ3V6T2 1871 aa13.71□□□□□ -0.21
SHMT2-220ENST00000555634 TTC41PQ6P2S7 1318 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 A0A1B0GUL7 405 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 SASH1O94885 1247 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 CHRNA5P30532 468 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 PTGER2P43116 358 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 CAVIN4Q5BKX8 364 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 SGIP1Q9BQI5 828 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 PIM2Q9P1W9 311 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 ATP6V0A2Q9Y487 856 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 MAST2Q6P0Q8 1798 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 CHD4Q14839 1912 aa13.7□□□□□ -0.22
SHMT2-220ENST00000555634 UBE4AQ14139 1066 aa13.69□□□□□ -0.22
SHMT2-220ENST00000555634 DPP8Q6V1X1 898 aaPredicted RBP13.69□□□□□ -0.22
SHMT2-220ENST00000555634 SP8Q8IXZ3 490 aa13.69□□□□□ -0.22
SHMT2-220ENST00000555634 SUPT20HQ8NEM7 779 aa13.69□□□□□ -0.22
SHMT2-220ENST00000555634 GNL3LQ9NVN8 582 aaKnown RBP13.69□□□□□ -0.22
SHMT2-220ENST00000555634 GGA1Q9UJY5 639 aa13.69□□□□□ -0.22
SHMT2-220ENST00000555634 MINPP1Q9UNW1 487 aa13.69□□□□□ -0.22
SHMT2-220ENST00000555634 LEMD3Q9Y2U8 911 aa13.69□□□□□ -0.22
SHMT2-220ENST00000555634 FER1L6Q2WGJ9 1857 aa13.69□□□□□ -0.22
SHMT2-220ENST00000555634 UFL1O94874 794 aa13.68□□□□□ -0.22
SHMT2-220ENST00000555634 DPEP1P16444 411 aa13.68□□□□□ -0.22
SHMT2-220ENST00000555634 ATP2B4P23634 1241 aa13.68□□□□□ -0.22
SHMT2-220ENST00000555634 CCDC93Q567U6 631 aa13.68□□□□□ -0.22
SHMT2-220ENST00000555634 DALRD3Q5D0E6 543 aaKnown RBP13.68□□□□□ -0.22
SHMT2-220ENST00000555634 TTC39AQ5SRH9 613 aa13.68□□□□□ -0.22
SHMT2-220ENST00000555634 EYA3Q99504 573 aa13.68□□□□□ -0.22
SHMT2-220ENST00000555634 ECHDC1Q9NTX5 307 aa13.68□□□□□ -0.22
SHMT2-220ENST00000555634 NSFL1CQ9UNZ2 370 aaKnown RBP13.68□□□□□ -0.22
SHMT2-220ENST00000555634 ZNF804BA4D1E1 1349 aa13.67□□□□□ -0.22
SHMT2-220ENST00000555634 G3V3G9 751 aa13.67□□□□□ -0.22
SHMT2-220ENST00000555634 GLRX3O76003 335 aaKnown RBP13.67□□□□□ -0.22
SHMT2-220ENST00000555634 UQCRFS1P1P0C7P4 283 aa13.67□□□□□ -0.22
SHMT2-220ENST00000555634 DCAF8Q5TAQ9 597 aa13.67□□□□□ -0.22
SHMT2-220ENST00000555634 CASC1Q6TDU7 716 aa13.67□□□□□ -0.22
SHMT2-220ENST00000555634 ZNF804AQ7Z570 1209 aa13.67□□□□□ -0.22
SHMT2-220ENST00000555634 RTKN2Q8IZC4 609 aa13.67□□□□□ -0.22
SHMT2-220ENST00000555634 MPNDQ8N594 471 aa13.67□□□□□ -0.22
SHMT2-220ENST00000555634 VGLL2Q8N8G2 317 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 193.1 ms