RNA–Protein interactions for RNA: ENST00000554811.5

XRCC3-208, Transcript of X-ray repair cross complementing 3, human

TSL 2

Gene XRCC3, Length 3,668 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
XRCC3-208	ENST00000554811	RRP12	Q5JTH9	1297 aa	Known RBP	13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811	RALYL	Q86SE5	291 aa	Known RBP	13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811	TMX1	Q9H3N1	280 aa		13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811	MRVI1	Q9Y6F6	885 aa		13.94	□□□□□ -0.18
XRCC3-208	ENST00000554811	TOB2	Q14106	344 aa	Predicted RBP	13.93	□□□□□ -0.18
XRCC3-208	ENST00000554811	TTLL7	Q6ZT98	887 aa		13.93	□□□□□ -0.18
XRCC3-208	ENST00000554811	SPATA31D1	Q6ZQQ2	1576 aa		13.93	□□□□□ -0.18
XRCC3-208	ENST00000554811	MCMDC2	Q4G0Z9	681 aa		13.93	□□□□□ -0.18
XRCC3-208	ENST00000554811	TTC39A	Q5SRH9	613 aa		13.93	□□□□□ -0.18
XRCC3-208	ENST00000554811	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.93	□□□□□ -0.18
XRCC3-208	ENST00000554811	RIMBP3C	A6NJZ7	1639 aa		13.93	□□□□□ -0.18
XRCC3-208	ENST00000554811	RIMBP3B	A6NNM3	1639 aa		13.93	□□□□□ -0.18
XRCC3-208	ENST00000554811	RIMBP3	Q9UFD9	1639 aa		13.93	□□□□□ -0.18
XRCC3-208	ENST00000554811	LRRC24	Q50LG9	513 aa		13.93	□□□□□ -0.18
XRCC3-208	ENST00000554811	IDH1	O75874	414 aa	Known RBP	13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	SNRPA1	P09661	255 aa	Known RBP	13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	NFXL1	Q6ZNB6	911 aa		13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	U2AF2	P26368	475 aa	Known RBP eCLIP	13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	MARCKS	P29966	332 aa	Predicted RBP	13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	PI16	Q6UXB8	463 aa		13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	NPHP3	Q7Z494	1330 aa		13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	KRT32	Q14532	448 aa		13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	SYNE3	Q6ZMZ3	975 aa		13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	AOPEP	Q8N6M6	819 aa		13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	METTL22	Q9BUU2	404 aa	Predicted RBP	13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	PUS3	Q9BZE2	481 aa	Known RBP	13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	PAG1	Q9NWQ8	432 aa		13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	CEP126	Q9P2H0	1117 aa		13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	CFAP45	Q9UL16	551 aa		13.92	□□□□□ -0.18
XRCC3-208	ENST00000554811	SCRN1	Q12765	414 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	ARHGEF25	Q86VW2	580 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	IFNL2	Q8IZJ0	200 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	MYRIP	Q8NFW9	859 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	MAP7D2	Q96T17	732 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	KCNF1	Q9H3M0	494 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	BCL2L12	Q9HB09	334 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	GOLGA8B	A8MQT2	603 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	CCDC57	Q2TAC2	916 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	HOMER1	Q86YM7	354 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	PRDM11	Q9NQV5	511 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	DDX19A	Q9NUU7	478 aa	Known RBP	13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811		U3KPZ7	1027 aa	Predicted RBP	13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	EVA1C	P58658	441 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	CCDC112	Q8NEF3	446 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	SLC52A2	Q9HAB3	445 aa		13.91	□□□□□ -0.18
XRCC3-208	ENST00000554811	TECPR2	O15040	1411 aa		13.9	□□□□□ -0.18
XRCC3-208	ENST00000554811	HOXB7	P09629	217 aa		13.9	□□□□□ -0.18
XRCC3-208	ENST00000554811	PGBD1	Q96JS3	809 aa		13.9	□□□□□ -0.18
XRCC3-208	ENST00000554811	USP28	Q96RU2	1077 aa		13.9	□□□□□ -0.18
XRCC3-208	ENST00000554811	FAM89A	Q96GI7	184 aa		13.9	□□□□□ -0.18
XRCC3-208	ENST00000554811	PTPN12	Q05209	780 aa	Known RBP	13.89	□□□□□ -0.19
XRCC3-208	ENST00000554811	HELB	Q8NG08	1087 aa	Predicted RBP	13.89	□□□□□ -0.19
XRCC3-208	ENST00000554811	TM6SF1	Q9BZW5	370 aa		13.89	□□□□□ -0.19
XRCC3-208	ENST00000554811	BABAM1	Q9NWV8	329 aa		13.89	□□□□□ -0.19
XRCC3-208	ENST00000554811	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.89	□□□□□ -0.19
XRCC3-208	ENST00000554811	GTF3C6	Q969F1	213 aa		13.89	□□□□□ -0.19
XRCC3-208	ENST00000554811	C3	P01024	1663 aa		13.89	□□□□□ -0.19
XRCC3-208	ENST00000554811	KLF18	A0A0U1RQI7	1052 aa		13.89	□□□□□ -0.19
XRCC3-208	ENST00000554811	MICU3	Q86XE3	530 aa		13.89	□□□□□ -0.19
XRCC3-208	ENST00000554811	CCAR2	Q8N163	923 aa	Known RBP	13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	C8orf76	Q96K31	380 aa		13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	NRXN3	Q9Y4C0	1643 aa		13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	HMG20B	Q9P0W2	317 aa		13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	RGPD8	O14715	1765 aa	Predicted RBP	13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811		A0A1B0GUL7	405 aa		13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	TRDN	Q13061	729 aa		13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	CCDC158	Q5M9N0	1113 aa		13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	CNNM1	Q9NRU3	951 aa		13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	ORC3	Q9UBD5	711 aa	Predicted RBP	13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	RERE	Q9P2R6	1566 aa		13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	PXDN	Q92626	1479 aa		13.88	□□□□□ -0.19
XRCC3-208	ENST00000554811	STOX1	Q6ZVD7	989 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	MYL10	Q9BUA6	226 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	CLSTN2	Q9H4D0	955 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	DIP2A	Q14689	1571 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	SKIL	P12757	684 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	LMOD1	P29536	600 aa	Predicted RBP	13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	ZNF75D	P51815	510 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	PDILT	Q8N807	584 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	ZNF396	Q96N95	335 aa	Predicted RBP	13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	CWC25	Q9NXE8	425 aa	Predicted RBP	13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	ADORA1	P30542	326 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	DHX32	Q7L7V1	743 aa	Known RBP	13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	CEP57L1	Q8IYX8	460 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	TMEM87A	Q8NBN3	555 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	KIAA1524	Q8TCG1	905 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	CACTIN	Q8WUQ7	758 aa	Known RBP	13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	PRIMPOL	Q96LW4	560 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	DIP2B	Q9P265	1576 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	MON2	Q7Z3U7	1717 aa		13.87	□□□□□ -0.19
XRCC3-208	ENST00000554811	PHKG2	P15735	406 aa		13.86	□□□□□ -0.19
XRCC3-208	ENST00000554811	HSPA2	P54652	639 aa		13.86	□□□□□ -0.19
XRCC3-208	ENST00000554811	TMC6	Q7Z403	805 aa		13.86	□□□□□ -0.19
XRCC3-208	ENST00000554811	SYNE4	Q8N205	404 aa		13.86	□□□□□ -0.19
XRCC3-208	ENST00000554811	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.86	□□□□□ -0.19
XRCC3-208	ENST00000554811	METTL24	Q5JXM2	366 aa		13.86	□□□□□ -0.19
XRCC3-208	ENST00000554811	SPECC1	Q5M775	1068 aa		13.86	□□□□□ -0.19
XRCC3-208	ENST00000554811	ATP5J	P18859	108 aa		13.86	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms