RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 UFL1O94874 794 aa16.32■□□□□ 0.2
LINC00643-202ENST00000553426 RPS12P25398 132 aaKnown RBP16.32■□□□□ 0.2
LINC00643-202ENST00000553426 ECE1P42892 770 aa16.32■□□□□ 0.2
LINC00643-202ENST00000553426 WDR63Q8IWG1 891 aa16.32■□□□□ 0.2
LINC00643-202ENST00000553426 MICALL2Q8IY33 904 aa16.32■□□□□ 0.2
LINC00643-202ENST00000553426 PRDM10Q9NQV6 1147 aa16.32■□□□□ 0.2
LINC00643-202ENST00000553426 SALL2Q9Y467 1007 aaPredicted RBP16.32■□□□□ 0.2
LINC00643-202ENST00000553426 DUOX1Q9NRD9 1551 aa16.31■□□□□ 0.2
LINC00643-202ENST00000553426 DOK7Q18PE1 504 aa16.31■□□□□ 0.2
LINC00643-202ENST00000553426 XDHP47989 1333 aa16.3■□□□□ 0.2
LINC00643-202ENST00000553426 WDR33Q9C0J8 1336 aaKnown RBP16.3■□□□□ 0.2
LINC00643-202ENST00000553426 TRAF5O00463 557 aa16.3■□□□□ 0.2
LINC00643-202ENST00000553426 IGKV5-2P06315 115 aa16.3■□□□□ 0.2
LINC00643-202ENST00000553426 CTSWP56202 376 aa16.3■□□□□ 0.2
LINC00643-202ENST00000553426 MAP2K1Q02750 393 aaPredicted RBP16.3■□□□□ 0.2
LINC00643-202ENST00000553426 FKBP5Q13451 457 aaPredicted RBP16.3■□□□□ 0.2
LINC00643-202ENST00000553426 CDC37L1Q7L3B6 337 aa16.3■□□□□ 0.2
LINC00643-202ENST00000553426 PGAP2Q9UHJ9 254 aa16.3■□□□□ 0.2
LINC00643-202ENST00000553426 ZBTB12Q9Y330 459 aaPredicted RBP16.3■□□□□ 0.2
LINC00643-202ENST00000553426 FANCIQ9NVI1 1328 aa16.29■□□□□ 0.2
LINC00643-202ENST00000553426 NEURL1BA8MQ27 555 aa16.29■□□□□ 0.2
LINC00643-202ENST00000553426 CELF2O95319 508 aaKnown RBP16.29■□□□□ 0.2
LINC00643-202ENST00000553426 CTCFP49711 727 aaPredicted RBP16.29■□□□□ 0.2
LINC00643-202ENST00000553426 FLIIQ13045 1269 aa16.29■□□□□ 0.2
LINC00643-202ENST00000553426 CWF19L2Q2TBE0 894 aaKnown RBP16.29■□□□□ 0.2
LINC00643-202ENST00000553426 BEGAINQ9BUH8 593 aa16.29■□□□□ 0.2
LINC00643-202ENST00000553426 GLIS2Q9BZE0 524 aaPredicted RBP16.29■□□□□ 0.2
LINC00643-202ENST00000553426 MYH16Q9H6N6 1097 aa16.29■□□□□ 0.2
LINC00643-202ENST00000553426 SLC34A2O95436 690 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 ATP2B4P23634 1241 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 LBX1P52954 281 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 FMR1Q06787 632 aaKnown RBP eCLIP16.28■□□□□ 0.2
LINC00643-202ENST00000553426 CST9Q5W186 159 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 G2E3Q7L622 706 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 UBE3BQ7Z3V4 1068 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 TTLL11Q8NHH1 800 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 TRPM4Q8TD43 1214 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 CAPNS2Q96L46 248 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 GPR101Q96P66 508 aaPredicted RBP16.28■□□□□ 0.2
LINC00643-202ENST00000553426 WBP1LQ9NX94 342 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 TLL2Q9Y6L7 1015 aa16.28■□□□□ 0.2
LINC00643-202ENST00000553426 HIRAP54198 1017 aaPredicted RBP16.27■□□□□ 0.2
LINC00643-202ENST00000553426 GRM1Q13255 1194 aa16.27■□□□□ 0.2
LINC00643-202ENST00000553426 SAMD7Q7Z3H4 446 aa16.27■□□□□ 0.2
LINC00643-202ENST00000553426 DNAAF4Q8WXU2 420 aa16.27■□□□□ 0.2
LINC00643-202ENST00000553426 ZNF408Q9H9D4 720 aa16.27■□□□□ 0.2
LINC00643-202ENST00000553426 BSDC1Q9NW68 430 aaPredicted RBP16.27■□□□□ 0.2
LINC00643-202ENST00000553426 SHTN1A0MZ66 631 aa16.26■□□□□ 0.19
LINC00643-202ENST00000553426 H7C1W4 665 aa16.26■□□□□ 0.19
LINC00643-202ENST00000553426 VIL1P09327 827 aaKnown RBP16.26■□□□□ 0.19
LINC00643-202ENST00000553426 IGHMBP2P38935 993 aaKnown RBP16.26■□□□□ 0.19
LINC00643-202ENST00000553426 EXOSC9Q06265 439 aaKnown RBP16.26■□□□□ 0.19
LINC00643-202ENST00000553426 GCKRQ14397 625 aa16.26■□□□□ 0.19
LINC00643-202ENST00000553426 TBC1D10BQ4KMP7 808 aaPredicted RBP16.26■□□□□ 0.19
LINC00643-202ENST00000553426 RBM26Q5T8P6 1007 aaKnown RBP16.26■□□□□ 0.19
LINC00643-202ENST00000553426 FAM9BQ8IZU0 186 aa16.26■□□□□ 0.19
LINC00643-202ENST00000553426 DCPSQ96C86 337 aaKnown RBP16.26■□□□□ 0.19
LINC00643-202ENST00000553426 GREM2Q9H772 168 aa16.26■□□□□ 0.19
LINC00643-202ENST00000553426 KCNQ5Q9NR82 932 aa16.26■□□□□ 0.19
LINC00643-202ENST00000553426 RTL9Q8NET4 1388 aa16.26■□□□□ 0.19
LINC00643-202ENST00000553426 TRPM7Q96QT4 1865 aa16.25■□□□□ 0.19
LINC00643-202ENST00000553426 COL4A1P02462 1669 aa16.25■□□□□ 0.19
LINC00643-202ENST00000553426 VAMP4O75379 141 aa16.25■□□□□ 0.19
LINC00643-202ENST00000553426 CYP4F22Q6NT55 531 aa16.25■□□□□ 0.19
LINC00643-202ENST00000553426 KRT26Q7Z3Y9 468 aa16.25■□□□□ 0.19
LINC00643-202ENST00000553426 PODNQ7Z5L7 613 aa16.25■□□□□ 0.19
LINC00643-202ENST00000553426 USP48Q86UV5 1035 aa16.25■□□□□ 0.19
LINC00643-202ENST00000553426 AGBL3Q8NEM8 1001 aa16.25■□□□□ 0.19
LINC00643-202ENST00000553426 LINS1Q8NG48 757 aa16.25■□□□□ 0.19
LINC00643-202ENST00000553426 HSPA8P11142 646 aaKnown RBP16.24■□□□□ 0.19
LINC00643-202ENST00000553426 SAPCD2Q86UD0 394 aa16.24■□□□□ 0.19
LINC00643-202ENST00000553426 HHIPL1Q96JK4 782 aa16.24■□□□□ 0.19
LINC00643-202ENST00000553426 MPHOSPH8Q99549 860 aa16.24■□□□□ 0.19
LINC00643-202ENST00000553426 PLA2G12BQ9BX93 195 aa16.24■□□□□ 0.19
LINC00643-202ENST00000553426 MINPP1Q9UNW1 487 aa16.24■□□□□ 0.19
LINC00643-202ENST00000553426 MAP2K2P36507 400 aa16.23■□□□□ 0.19
LINC00643-202ENST00000553426 KIF4BQ2VIQ3 1234 aa16.23■□□□□ 0.19
LINC00643-202ENST00000553426 FAM161AQ3B820 660 aa16.23■□□□□ 0.19
LINC00643-202ENST00000553426 RSBN1LQ6PCB5 846 aaPredicted RBP16.23■□□□□ 0.19
LINC00643-202ENST00000553426 ABHD8Q96I13 439 aa16.23■□□□□ 0.19
LINC00643-202ENST00000553426 ANKRD2Q9GZV1 360 aa16.23■□□□□ 0.19
LINC00643-202ENST00000553426 USP17L3A6NCW0 530 aa16.22■□□□□ 0.19
LINC00643-202ENST00000553426 USP17L4A6NCW7 530 aa16.22■□□□□ 0.19
LINC00643-202ENST00000553426 ITGA6P23229 1130 aa16.22■□□□□ 0.19
LINC00643-202ENST00000553426 CCT4P50991 539 aaKnown RBP16.22■□□□□ 0.19
LINC00643-202ENST00000553426 USP17L1Q7RTZ2 530 aa16.22■□□□□ 0.19
LINC00643-202ENST00000553426 SULF1Q8IWU6 871 aa16.22■□□□□ 0.19
LINC00643-202ENST00000553426 LEMD3Q9Y2U8 911 aa16.22■□□□□ 0.19
LINC00643-202ENST00000553426 C2orf69Q8N8R5 385 aa16.21■□□□□ 0.19
LINC00643-202ENST00000553426 MED23Q9ULK4 1368 aa16.21■□□□□ 0.19
LINC00643-202ENST00000553426 MYH3P11055 1940 aa16.21■□□□□ 0.19
LINC00643-202ENST00000553426 CACNA1FO60840 1977 aa16.2■□□□□ 0.18
LINC00643-202ENST00000553426 ANKRD18BA2A2Z9 1011 aa16.2■□□□□ 0.18
LINC00643-202ENST00000553426 EGFRP00533 1210 aa16.2■□□□□ 0.18
LINC00643-202ENST00000553426 USP17L8P0C7I0 530 aa16.2■□□□□ 0.18
LINC00643-202ENST00000553426 KCNJ4P48050 445 aa16.2■□□□□ 0.18
LINC00643-202ENST00000553426 HUNKP57058 714 aa16.2■□□□□ 0.18
LINC00643-202ENST00000553426 CSF1RP07333 972 aa16.19■□□□□ 0.18
LINC00643-202ENST00000553426 CASP7P55210 303 aa16.19■□□□□ 0.18
LINC00643-202ENST00000553426 ZNF280AP59817 542 aaPredicted RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms