RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 C10orf71Q711Q0 1435 aa12.12□□□□□ -0.47
TMEM260-204ENST00000553335 SRGAP3O43295 1099 aa12.12□□□□□ -0.47
TMEM260-204ENST00000553335 PTGER2P43116 358 aa12.12□□□□□ -0.47
TMEM260-204ENST00000553335 CCDC57Q2TAC2 916 aa12.12□□□□□ -0.47
TMEM260-204ENST00000553335 RPGRQ92834 1020 aaKnown RBP12.12□□□□□ -0.47
TMEM260-204ENST00000553335 COL11A2P13942 1736 aaPredicted RBP12.11□□□□□ -0.47
TMEM260-204ENST00000553335 TAF1P21675 1872 aa12.11□□□□□ -0.47
TMEM260-204ENST00000553335 RTL9Q8NET4 1388 aa12.11□□□□□ -0.47
TMEM260-204ENST00000553335 ANKRD18BA2A2Z9 1011 aa12.11□□□□□ -0.47
TMEM260-204ENST00000553335 KLRG2A4D1S0 409 aaPredicted RBP12.11□□□□□ -0.47
TMEM260-204ENST00000553335 IFIT5Q13325 482 aaKnown RBP12.11□□□□□ -0.47
TMEM260-204ENST00000553335 DDX46Q7L014 1031 aaKnown RBP12.11□□□□□ -0.47
TMEM260-204ENST00000553335 RBM17Q96I25 401 aaKnown RBP12.11□□□□□ -0.47
TMEM260-204ENST00000553335 CCDC85AQ96PX6 553 aaPredicted RBP12.11□□□□□ -0.47
TMEM260-204ENST00000553335 PCDHB15Q9Y5E8 787 aa12.11□□□□□ -0.47
TMEM260-204ENST00000553335 PNMA6EA0A0J9YXQ4 647 aa12.1□□□□□ -0.47
TMEM260-204ENST00000553335 H0YIN7 160 aa12.1□□□□□ -0.47
TMEM260-204ENST00000553335 NPR1P16066 1061 aa12.1□□□□□ -0.47
TMEM260-204ENST00000553335 ITGA6P23229 1130 aa12.1□□□□□ -0.47
TMEM260-204ENST00000553335 TGFB2P61812 414 aa12.1□□□□□ -0.47
TMEM260-204ENST00000553335 TAF7LQ5H9L4 462 aa12.1□□□□□ -0.47
TMEM260-204ENST00000553335 SSH3Q8TE77 659 aa12.1□□□□□ -0.47
TMEM260-204ENST00000553335 CDC5LQ99459 802 aaKnown RBP12.1□□□□□ -0.47
TMEM260-204ENST00000553335 RWDD1Q9H446 243 aaPredicted RBP12.1□□□□□ -0.47
TMEM260-204ENST00000553335 GREM2Q9H772 168 aa12.1□□□□□ -0.47
TMEM260-204ENST00000553335 CD2APQ9Y5K6 639 aa12.1□□□□□ -0.47
TMEM260-204ENST00000553335 KIAA1551Q9HCM1 1747 aa12.09□□□□□ -0.47
TMEM260-204ENST00000553335 ALDH1B1P30837 517 aa12.09□□□□□ -0.47
TMEM260-204ENST00000553335 FAM161AQ3B820 660 aa12.09□□□□□ -0.47
TMEM260-204ENST00000553335 CRY2Q49AN0 593 aa12.09□□□□□ -0.47
TMEM260-204ENST00000553335 C3orf67Q6ZVT6 689 aa12.09□□□□□ -0.47
TMEM260-204ENST00000553335 C2CD5Q86YS7 1000 aa12.09□□□□□ -0.47
TMEM260-204ENST00000553335 MASTLQ96GX5 879 aa12.09□□□□□ -0.47
TMEM260-204ENST00000553335 PPP4R2Q9NY27 417 aa12.09□□□□□ -0.47
TMEM260-204ENST00000553335 SRGNP10124 158 aa12.08□□□□□ -0.48
TMEM260-204ENST00000553335 IGHMBP2P38935 993 aaKnown RBP12.08□□□□□ -0.48
TMEM260-204ENST00000553335 HDAC1Q13547 482 aaPredicted RBP12.08□□□□□ -0.48
TMEM260-204ENST00000553335 SIRT2Q8IXJ6 389 aa12.08□□□□□ -0.48
TMEM260-204ENST00000553335 CCDC136Q96JN2 1154 aa12.08□□□□□ -0.48
TMEM260-204ENST00000553335 CRAMP1Q96RY5 1269 aa12.08□□□□□ -0.48
TMEM260-204ENST00000553335 WDR70Q9NW82 654 aa12.08□□□□□ -0.48
TMEM260-204ENST00000553335 HOXA10P31260 410 aaPredicted RBP12.07□□□□□ -0.48
TMEM260-204ENST00000553335 BRCA1P38398 1863 aaKnown RBP12.07□□□□□ -0.48
TMEM260-204ENST00000553335 RFX5P48382 616 aaPredicted RBP12.07□□□□□ -0.48
TMEM260-204ENST00000553335 G3BP1Q13283 466 aaKnown RBP eCLIP12.07□□□□□ -0.48
TMEM260-204ENST00000553335 GRAPQ13588 217 aa12.07□□□□□ -0.48
TMEM260-204ENST00000553335 HSP90AB4PQ58FF6 505 aa12.07□□□□□ -0.48
TMEM260-204ENST00000553335 STYK1Q6J9G0 422 aa12.07□□□□□ -0.48
TMEM260-204ENST00000553335 ANKRD18AQ8IVF6 992 aa12.07□□□□□ -0.48
TMEM260-204ENST00000553335 GRAPLQ8TC17 118 aaPredicted RBP12.07□□□□□ -0.48
TMEM260-204ENST00000553335 ZNF622Q969S3 477 aaKnown RBP eCLIP12.07□□□□□ -0.48
TMEM260-204ENST00000553335 MPHOSPH8Q99549 860 aa12.07□□□□□ -0.48
TMEM260-204ENST00000553335 COPRSQ9NQ92 184 aa12.07□□□□□ -0.48
TMEM260-204ENST00000553335 SEC31BQ9NQW1 1179 aa12.07□□□□□ -0.48
TMEM260-204ENST00000553335 GTF3C3Q9Y5Q9 886 aa12.07□□□□□ -0.48
TMEM260-204ENST00000553335 A0A1B0GUL6 1792 aa12.06□□□□□ -0.48
TMEM260-204ENST00000553335 SURF6O75683 361 aaKnown RBP12.06□□□□□ -0.48
TMEM260-204ENST00000553335 BBOX1O75936 387 aa12.06□□□□□ -0.48
TMEM260-204ENST00000553335 CHRNA5P30532 468 aa12.06□□□□□ -0.48
TMEM260-204ENST00000553335 RPS8P62241 208 aaKnown RBP12.06□□□□□ -0.48
TMEM260-204ENST00000553335 PTPN12Q05209 780 aaKnown RBP12.06□□□□□ -0.48
TMEM260-204ENST00000553335 TMC4Q7Z404 712 aa12.06□□□□□ -0.48
TMEM260-204ENST00000553335 EFCAB3Q8N7B9 438 aa12.06□□□□□ -0.48
TMEM260-204ENST00000553335 CNKSR1Q969H4 720 aa12.06□□□□□ -0.48
TMEM260-204ENST00000553335 GCC1Q96CN9 775 aa12.06□□□□□ -0.48
TMEM260-204ENST00000553335 ZNF594Q96JF6 807 aaPredicted RBP12.06□□□□□ -0.48
TMEM260-204ENST00000553335 CNNM1Q9NRU3 951 aa12.06□□□□□ -0.48
TMEM260-204ENST00000553335 CD44P16070 742 aaKnown RBP12.05□□□□□ -0.48
TMEM260-204ENST00000553335 OS9Q13438 667 aaPredicted RBP12.05□□□□□ -0.48
TMEM260-204ENST00000553335 LDHAL6AQ6ZMR3 332 aa12.05□□□□□ -0.48
TMEM260-204ENST00000553335 ERC1Q8IUD2 1116 aa12.05□□□□□ -0.48
TMEM260-204ENST00000553335 KLHDC4Q8TBB5 520 aa12.05□□□□□ -0.48
TMEM260-204ENST00000553335 CELF1Q92879 486 aaKnown RBP12.05□□□□□ -0.48
TMEM260-204ENST00000553335 TMX4Q9H1E5 349 aaPredicted RBP12.05□□□□□ -0.48
TMEM260-204ENST00000553335 DCTPP1Q9H773 170 aa12.05□□□□□ -0.48
TMEM260-204ENST00000553335 PA2G4Q9UQ80 394 aaKnown RBP12.05□□□□□ -0.48
TMEM260-204ENST00000553335 NOP58Q9Y2X3 529 aaKnown RBP12.05□□□□□ -0.48
TMEM260-204ENST00000553335 LRRC37AA6NMS7 1700 aa12.04□□□□□ -0.48
TMEM260-204ENST00000553335 A0A0G2JLW4 131 aa12.04□□□□□ -0.48
TMEM260-204ENST00000553335 EYA2O00167 538 aa12.04□□□□□ -0.48
TMEM260-204ENST00000553335 RAB11FIP3O75154 756 aa12.04□□□□□ -0.48
TMEM260-204ENST00000553335 CIAO1O76071 339 aa12.04□□□□□ -0.48
TMEM260-204ENST00000553335 DPEP1P16444 411 aa12.04□□□□□ -0.48
TMEM260-204ENST00000553335 IL15P40933 162 aaPredicted RBP12.04□□□□□ -0.48
TMEM260-204ENST00000553335 TTLL6Q8N841 843 aa12.04□□□□□ -0.48
TMEM260-204ENST00000553335 SIL1Q9H173 461 aa12.04□□□□□ -0.48
TMEM260-204ENST00000553335 BSDC1Q9NW68 430 aaPredicted RBP12.04□□□□□ -0.48
TMEM260-204ENST00000553335 PIM2Q9P1W9 311 aa12.04□□□□□ -0.48
TMEM260-204ENST00000553335 SLX4Q8IY92 1834 aa12.04□□□□□ -0.48
TMEM260-204ENST00000553335 ARFGEF1Q9Y6D6 1849 aa12.03□□□□□ -0.48
TMEM260-204ENST00000553335 PPEF1O14829 653 aaPredicted RBP12.03□□□□□ -0.48
TMEM260-204ENST00000553335 IGHDP01880 384 aa12.03□□□□□ -0.48
TMEM260-204ENST00000553335 B4GALNT3Q6L9W6 998 aa12.03□□□□□ -0.48
TMEM260-204ENST00000553335 CENPQQ7L2Z9 268 aaPredicted RBP12.03□□□□□ -0.48
TMEM260-204ENST00000553335 FBXO22Q8NEZ5 403 aa12.03□□□□□ -0.48
TMEM260-204ENST00000553335 FHDC1Q9C0D6 1143 aaPredicted RBP12.03□□□□□ -0.48
TMEM260-204ENST00000553335 EXOC6BQ9Y2D4 811 aa12.03□□□□□ -0.48
TMEM260-204ENST00000553335 MROH5Q6ZUA9 1318 aa12.03□□□□□ -0.48
TMEM260-204ENST00000553335 COL4A1P02462 1669 aa12.03□□□□□ -0.48
TMEM260-204ENST00000553335 KCNA3P22001 575 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms