RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CCDC88AQ3V6T2 1871 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 COL4A1P02462 1669 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 CEP350Q5VT06 3117 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 ABCC4O15439 1325 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 FER1L6Q2WGJ9 1857 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 UQCRHLA0A096LP55 91 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 UQCRHP07919 91 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 RLBP1P12271 317 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 TRIM27P14373 513 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 BRPF1P55201 1214 aaPredicted RBP9.33□□□□□ -0.92
LIMA1-216ENST00000552909 GCKRQ14397 625 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 HS1BP3Q53T59 392 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 BEND3Q5T5X7 828 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 SLC4A10Q6U841 1118 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 ATF7IPQ6VMQ6 1270 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 DZIP1LQ8IYY4 767 aaKnown RBP9.33□□□□□ -0.92
LIMA1-216ENST00000552909 TNPO1Q92973 898 aaKnown RBP9.33□□□□□ -0.92
LIMA1-216ENST00000552909 RBM17Q96I25 401 aaKnown RBP9.33□□□□□ -0.92
LIMA1-216ENST00000552909 CCDC85AQ96PX6 553 aaPredicted RBP9.33□□□□□ -0.92
LIMA1-216ENST00000552909 CRAMP1Q96RY5 1269 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 CIZ1Q9ULV3 898 aaPredicted RBP9.33□□□□□ -0.92
LIMA1-216ENST00000552909 DYNC1I1O14576 645 aa9.32□□□□□ -0.92
LIMA1-216ENST00000552909 DDIT3P35638 169 aa9.32□□□□□ -0.92
LIMA1-216ENST00000552909 MFAP1P55081 439 aaKnown RBP9.32□□□□□ -0.92
LIMA1-216ENST00000552909 UTP14CQ5TAP6 766 aaKnown RBP9.32□□□□□ -0.92
LIMA1-216ENST00000552909 UBE3BQ7Z3V4 1068 aa9.32□□□□□ -0.92
LIMA1-216ENST00000552909 FTSJ3Q8IY81 847 aaKnown RBP9.32□□□□□ -0.92
LIMA1-216ENST00000552909 LINS1Q8NG48 757 aa9.32□□□□□ -0.92
LIMA1-216ENST00000552909 ZNF526Q8TF50 670 aaPredicted RBP9.32□□□□□ -0.92
LIMA1-216ENST00000552909 RNF181Q9P0P0 153 aa9.32□□□□□ -0.92
LIMA1-216ENST00000552909 H7C1W4 665 aa9.31□□□□□ -0.92
LIMA1-216ENST00000552909 SF3B3Q15393 1217 aaKnown RBP9.31□□□□□ -0.92
LIMA1-216ENST00000552909 CELF1Q92879 486 aaKnown RBP9.31□□□□□ -0.92
LIMA1-216ENST00000552909 SEC31BQ9NQW1 1179 aa9.31□□□□□ -0.92
LIMA1-216ENST00000552909 ZHX1Q9UKY1 873 aaPredicted RBP9.31□□□□□ -0.92
LIMA1-216ENST00000552909 KIF16BQ96L93 1317 aa9.31□□□□□ -0.92
LIMA1-216ENST00000552909 ZNF500O60304 480 aaPredicted RBP9.31□□□□□ -0.92
LIMA1-216ENST00000552909 NCLP19338 710 aaKnown RBP9.31□□□□□ -0.92
LIMA1-216ENST00000552909 CASP7P55210 303 aa9.31□□□□□ -0.92
LIMA1-216ENST00000552909 PDE4CQ08493 712 aa9.31□□□□□ -0.92
LIMA1-216ENST00000552909 DDX46Q7L014 1031 aaKnown RBP9.31□□□□□ -0.92
LIMA1-216ENST00000552909 SNED1Q8TER0 1413 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 PPEF1O14829 653 aaPredicted RBP9.3□□□□□ -0.92
LIMA1-216ENST00000552909 PDE8AO60658 829 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 LMNB1P20700 586 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 DMTNQ08495 405 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 CCDC93Q567U6 631 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 ARHGAP45Q92619 1136 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 TAOK3Q9H2K8 898 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 RWDD1Q9H446 243 aaPredicted RBP9.3□□□□□ -0.92
LIMA1-216ENST00000552909 ZNF277Q9NRM2 450 aaPredicted RBP9.3□□□□□ -0.92
LIMA1-216ENST00000552909 GRAPQ13588 217 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 RAB3GAP1Q15042 981 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 CSPP1Q1MSJ5 1256 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 SMC5Q8IY18 1101 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 TTLL11Q8NHH1 800 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 GRAPLQ8TC17 118 aaPredicted RBP9.3□□□□□ -0.92
LIMA1-216ENST00000552909 PRDM10Q9NQV6 1147 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 NOL7Q9UMY1 257 aaKnown RBP9.3□□□□□ -0.92
LIMA1-216ENST00000552909 CDHR2Q9BYE9 1310 aa9.3□□□□□ -0.92
LIMA1-216ENST00000552909 BBOX1O75936 387 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 TMEM57Q8N5G2 664 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 ARID3AQ99856 593 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 ATP6V0A2Q9Y487 856 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 PCDHB15Q9Y5E8 787 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 GOLGA6L22H0YM25 854 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 CTSWP56202 376 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 FKBP4Q02790 459 aaKnown RBP eCLIP9.29□□□□□ -0.92
LIMA1-216ENST00000552909 MVPQ14764 893 aaKnown RBP9.29□□□□□ -0.92
LIMA1-216ENST00000552909 SOGA3Q5TF21 947 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 ITPRIPQ8IWB1 547 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 RTKN2Q8IZC4 609 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 SNX21Q969T3 373 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 CCDC94Q9BW85 323 aaPredicted RBP9.29□□□□□ -0.92
LIMA1-216ENST00000552909 SRCIN1Q9C0H9 1055 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 GREM2Q9H772 168 aa9.29□□□□□ -0.92
LIMA1-216ENST00000552909 PTPRCP08575 1304 aa9.28□□□□□ -0.92
LIMA1-216ENST00000552909 PCNTO95613 3336 aa9.28□□□□□ -0.92
LIMA1-216ENST00000552909 GRM8O00222 908 aa9.28□□□□□ -0.92
LIMA1-216ENST00000552909 NBPF7P0C2Y1 421 aaPredicted RBP9.28□□□□□ -0.92
LIMA1-216ENST00000552909 RPS8P62241 208 aaKnown RBP9.28□□□□□ -0.92
LIMA1-216ENST00000552909 EPHA10Q5JZY3 1008 aa9.28□□□□□ -0.92
LIMA1-216ENST00000552909 API5Q9BZZ5 524 aaKnown RBP9.28□□□□□ -0.92
LIMA1-216ENST00000552909 LTBP3Q9NS15 1303 aa9.28□□□□□ -0.92
LIMA1-216ENST00000552909 MYH3P11055 1940 aa9.28□□□□□ -0.92
LIMA1-216ENST00000552909 CCDC152Q4G0S7 254 aa9.27□□□□□ -0.92
LIMA1-216ENST00000552909 SASS6Q6UVJ0 657 aa9.27□□□□□ -0.92
LIMA1-216ENST00000552909 SP8Q8IXZ3 490 aa9.27□□□□□ -0.92
LIMA1-216ENST00000552909 ALDH1L1O75891 902 aa9.27□□□□□ -0.93
LIMA1-216ENST00000552909 FOXO4P98177 505 aa9.27□□□□□ -0.93
LIMA1-216ENST00000552909 KLHL40Q2TBA0 621 aa9.27□□□□□ -0.93
LIMA1-216ENST00000552909 CC2D2BQ6DHV5 1058 aa9.27□□□□□ -0.93
LIMA1-216ENST00000552909 KAZALD1Q96I82 304 aa9.27□□□□□ -0.93
LIMA1-216ENST00000552909 PSMD1Q99460 953 aa9.27□□□□□ -0.93
LIMA1-216ENST00000552909 PLA2G12BQ9BX93 195 aa9.27□□□□□ -0.93
LIMA1-216ENST00000552909 C9orf78Q9NZ63 289 aaPredicted RBP9.27□□□□□ -0.93
LIMA1-216ENST00000552909 DICER1Q9UPY3 1922 aaKnown RBP9.27□□□□□ -0.93
LIMA1-216ENST00000552909 COL4A5P29400 1685 aa9.26□□□□□ -0.93
LIMA1-216ENST00000552909 WTIPA6NIX2 430 aaPredicted RBP9.26□□□□□ -0.93
LIMA1-216ENST00000552909 CSF1RP07333 972 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms